Factsheet for PGSC0003DMT400009842

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
nucleus 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os06t0192500-02	Rice	mitochondrion	69.23	63.97
Solyc09g008120.2.1	Tomato	nucleus	99.2	52.6
VIT_01s0137g00640.t01	Wine grape	nucleus	73.74	38.29
KRH70930	Soybean	nucleus	70.82	37.87
KRH75071	Soybean	nucleus	70.56	37.73
CDY02818	Canola	nucleus	65.25	37.05
KXG22666	Sorghum	nucleus	68.44	36.6
Bra011023.1-P	Field mustard	nucleus	66.05	36.14
TraesCS7B01G060800.1	Wheat	plastid	67.64	35.76
TraesCS7A01G156700.1	Wheat	plastid	67.64	35.76
TraesCS7D01G157100.1	Wheat	plastid	67.37	35.62
CDY36075	Canola	nucleus	63.13	35.31
CDY32702	Canola	nucleus	64.46	35.12
Zm00001d011963_P002	Maize	plasma membrane	67.11	35.09
CDX85017	Canola	cytosol, plastid	66.84	34.9
CDY34567	Canola	nucleus	61.27	34.84
CDY16154	Canola	nucleus, plastid	66.05	34.44
AT1G26370.1	Thale cress	plastid	64.99	34.17
Bra024720.1-P	Field mustard	nucleus	66.05	33.83
HORVU7Hr1G032080.3	Barley	plastid	67.64	31.14
GSMUA_Achr5P05110_001	Banana	nucleus	70.82	26.28
PGSC0003DMT400046188	Potato	nucleus	41.64	22.75
PGSC0003DMT400023284	Potato	nucleus	40.05	20.89
PGSC0003DMT400084916	Potato	nucleus	43.77	20.6
PGSC0003DMT400005723	Potato	nucleus	43.77	20.07
PGSC0003DMT400038620	Potato	cytosol, nucleus, plastid	17.77	19.2
PGSC0003DMT400039875	Potato	nucleus	38.46	15.71
PGSC0003DMT400063370	Potato	nucleus	43.24	15.52
PGSC0003DMT400056692	Potato	nucleus	42.18	13.94
PGSC0003DMT400055058	Potato	nucleus	30.77	13.58
PGSC0003DMT400018531	Potato	nucleus	37.93	11.13
PGSC0003DMT400055091	Potato	mitochondrion	27.32	8.85
PGSC0003DMT400000297	Potato	nucleus	30.24	8.53
PGSC0003DMT400041805	Potato	nucleus	32.36	7.52
PGSC0003DMT400060759	Potato	nucleus	32.89	7.17
PGSC0003DMT400063366	Potato	plastid	0.0	0.0
PGSC0003DMT400041647	Potato	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.20.120.1080	Gene3D:3.40.50.300	MapMan:35.1	ncoils:Coil	InterPro:DUF1605	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0043484	InterPro:Helicase-assoc_dom	InterPro:Helicase_C
InterPro:IPR001650	UniProt:M0ZX08	InterPro:P-loop_NTPase	PFAM:PF00271	PFAM:PF04408	PFAM:PF07717
EnsemblPlantsGene:PGSC0003DMG400003859	PGSC:PGSC0003DMG400003859	EnsemblPlants:PGSC0003DMT400009842	PFscan:PS51194	PANTHER:PTHR18934	PANTHER:PTHR18934:SF85
SMART:SM00847	SUPFAM:SSF52540	UniParc:UPI000295CE95	:	:	:

Description

ATP-dependent RNA helicase [Source:PGSC_GENE;Acc:PGSC0003DMG400003859]

Coordinates

chr9:-:5260643..5267305

Molecular Weight (calculated)

42573.7 Da

IEP (calculated)

8.836

GRAVY (calculated)

-0.123

Length

377 amino acids

Sequence
(BLAST)

001: MRVFMPSPAG HRKVILATNI AETSVTIPGI RYVVDPGLVK ARTYDPKMGV DSLIIVTTSK AQALQRSGRA GRDGPGKCYR LYQESFFEKL TDSTLPEIKR
101: CDLSNVVLQL KALGIDDVIN FDFIEKPDRT AVVNSLWSLY LLGAVTEDNK LSDVGRQMAR LPLDPVYSKA LIVASQFGCL KEMLICVAML SVESIFYAPR
201: EKLEESRNAL KSFASPEGDH LTLLNVYRAA DEFFQKSKMV HSEEKAEKNL RKWCKDNYIN SRSLKHARDI HSQIVRNVEQ MGLRVTSCED DTLLLRRCLA
301: ASFFLKAAMK QPDGAYRVTL SGLIVQIHPS SVLFRAKPEC IVFNELVHTN HSYVRNVSRI DYLWLVELAP HLYAVQD

Best Arabidopsis Sequence Match ( AT1G26370.1 )
(BLAST)

001: MPSMAQGELK SFVQNSRPNP KSPTVSPFSM RQKIAEHRRS LPIASVEKRL VEEVQKNDIL IIVGETGSGK TTQLPQFLYN AGFCREGKMI GITQPRRIAA
101: VTVAKRVAEE CEVQLGQKVG YSIRFDDTTS GSTRLKYMTD GLLLREALLD PHLSRYSVII VDEAHDRSVH TDVLLALLKK IQRTRSQPVS EKTEFGNVAS
201: QVQTTTRDAN GPQQNGVLKG YQGRKLSPLK LIIMSASLDA RVFSEYFGGA KAVHVQGRQF PVDILYTVHP ESDYVDATLV TIFQIHFEEK PGDILVFLTG
301: QDEIESVERL VQERLQNIPE DKRKLLPLAI FSALPSEQQM KVFAPAPTGF RKVILATNIA ETSITIPGIR YVIDPGFVKA RSYDPSKGME SLDVVPASKA
401: QTLQRSGRAG REGPGKSFRL YPEREFEKLE DSTKPEIKRC NLSNIILQLK ALGIDDIVGF DFIDKPSRGA IIKALAELHS LGALADDGKL ENPVGYQMSR
501: LPLEPVYSKA LILANQFNCL EEMLITVAVL SVESIFYDPR EKREEARTSK NHFASVEGDH LTYLSVYRES DEFLEKRKAA GSGNNIDKIM KKWCKENYVN
601: SRSLKHARDI YRQIREHVEQ IGFNVSSCGN DMLAFRRCLA ASFFLKAAQR QLDGTYRALE SGEVVHIHPT SVLFRAKPEC VIFNELMQTS KKYIKNLTII
701: DSLWLSELAP HHFQTAE

Arabidopsis Description

RID1Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 [Source:UniProtKB/Swiss-Prot;Acc:F4IE66]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.