Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 2
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra011023.1-P | Field mustard | nucleus | 99.26 | 97.1 |
| CDY34567 | Canola | nucleus | 91.84 | 93.36 |
| CDX85017 | Canola | cytosol, plastid | 86.8 | 81.02 |
| CDY16154 | Canola | nucleus, plastid | 86.35 | 80.5 |
| CDY02818 | Canola | nucleus | 78.93 | 80.12 |
| CDY32702 | Canola | nucleus | 80.71 | 78.61 |
| AT1G26370.1 | Thale cress | plastid | 81.45 | 76.57 |
| KRH70930 | Soybean | nucleus | 68.55 | 65.53 |
| KRH75071 | Soybean | nucleus | 68.1 | 65.11 |
| VIT_01s0137g00640.t01 | Wine grape | nucleus | 68.4 | 63.5 |
| PGSC0003DMT400009842 | Potato | mitochondrion | 35.31 | 63.13 |
| Solyc09g008120.2.1 | Tomato | nucleus | 65.28 | 61.88 |
| KXG22666 | Sorghum | nucleus | 63.8 | 60.99 |
| Os06t0192500-02 | Rice | mitochondrion | 36.8 | 60.78 |
| TraesCS7A01G156700.1 | Wheat | plastid | 63.8 | 60.31 |
| TraesCS7D01G157100.1 | Wheat | plastid | 63.8 | 60.31 |
| TraesCS7B01G060800.1 | Wheat | plastid | 63.5 | 60.03 |
| Zm00001d011963_P002 | Maize | plasma membrane | 63.2 | 59.08 |
| HORVU7Hr1G032080.3 | Barley | plastid | 63.8 | 52.5 |
| GSMUA_Achr5P05110_001 | Banana | nucleus | 64.24 | 42.62 |
| CDX74061 | Canola | cytosol | 19.88 | 41.74 |
| CDY68405 | Canola | nucleus | 40.06 | 40.3 |
| CDX76626 | Canola | nucleus | 40.95 | 38.44 |
| CDX99466 | Canola | nucleus | 39.91 | 38.43 |
| CDX78859 | Canola | nucleus | 39.76 | 38.4 |
| CDY11413 | Canola | nucleus | 40.8 | 38.3 |
| CDX74059 | Canola | nucleus | 14.99 | 38.26 |
| CDX83337 | Canola | cytosol | 40.95 | 38.17 |
| CDX95715 | Canola | cytosol | 40.95 | 38.07 |
| CDY37024 | Canola | cytosol, mitochondrion | 17.51 | 36.42 |
| CDY23338 | Canola | cytosol | 22.26 | 35.55 |
| CDX90112 | Canola | nucleus | 36.8 | 35.18 |
| CDY11762 | Canola | nucleus | 36.65 | 35.09 |
| CDY60185 | Canola | nucleus | 41.69 | 32.71 |
| CDY40514 | Canola | nucleus | 41.69 | 32.64 |
| CDY26898 | Canola | nucleus | 44.21 | 28.54 |
| CDY32278 | Canola | endoplasmic reticulum | 44.21 | 28.54 |
| CDX83624 | Canola | nucleus | 44.81 | 27.09 |
| CDY13640 | Canola | nucleus | 44.81 | 26.84 |
| CDY23802 | Canola | nucleus | 18.25 | 23.43 |
| CDX85676 | Canola | nucleus | 38.28 | 20.67 |
| CDX91151 | Canola | nucleus | 38.28 | 20.66 |
| CDY51663 | Canola | nucleus | 1.93 | 20.63 |
| CDX91491 | Canola | nucleus | 1.93 | 20.63 |
| CDX84588 | Canola | plastid, vacuole | 29.82 | 19.42 |
| CDX79642 | Canola | nucleus, vacuole | 29.82 | 19.42 |
| CDY48353 | Canola | nucleus | 34.12 | 18.81 |
| CDY34159 | Canola | nucleus | 34.42 | 18.76 |
| CDY17694 | Canola | nucleus | 30.56 | 18.15 |
| CDY57512 | Canola | nucleus | 30.42 | 18.06 |
| CDX93688 | Canola | plastid | 31.6 | 18.05 |
| CDY40601 | Canola | nucleus, plastid | 31.45 | 17.95 |
| CDY10756 | Canola | nucleus | 27.6 | 17.08 |
| CDX70187 | Canola | mitochondrion | 29.23 | 17.04 |
| CDX98799 | Canola | mitochondrion | 29.08 | 16.98 |
| CDX97797 | Canola | nucleus | 28.19 | 14.72 |
| CDY63687 | Canola | nucleus, plastid | 24.04 | 14.59 |
| CDY29644 | Canola | nucleus | 28.04 | 14.46 |
| CDY39917 | Canola | nucleus | 30.12 | 14.37 |
| CDY10215 | Canola | nucleus | 27.15 | 14.25 |
| CDY29164 | Canola | nucleus | 29.97 | 14.19 |
| CDX69841 | Canola | plastid | 33.09 | 12.62 |
| CDX78376 | Canola | plastid | 32.79 | 12.58 |
| CDX96996 | Canola | nucleus | 32.94 | 12.55 |
| CDX81170 | Canola | plastid | 32.49 | 12.42 |
Protein Annotations
| MapMan:16.4.7.1.7 | Gene3D:3.40.50.300 | GO:A0A078HCG6 | UniProt:A0A078HCG6 | EnsemblPlants:CDY36075 | ProteinID:CDY36075 |
| ProteinID:CDY36075.1 | InterPro:DNA/RNA_helicase_DEAH_CS | InterPro:DUF1605 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0016787 | EnsemblPlantsGene:GSBRNA2T00059909001 | InterPro:Helicase-assoc_dom |
| InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:P-loop_NTPase | PFAM:PF00271 |
| PFAM:PF04408 | PFAM:PF07717 | ScanProsite:PS00690 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR18934 |
| PANTHER:PTHR18934:SF85 | SMART:SM00487 | SMART:SM00490 | SMART:SM00847 | SUPFAM:SSF52540 | UniParc:UPI0004EE6F2D |
| SEG:seg | : | : | : | : | : |
Description
BnaA08g19730DBnaA08g19730D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HCG6]
Coordinates
chrLK032367:+:526..3436
Molecular Weight (calculated)
76304.2 Da
IEP (calculated)
8.200
GRAVY (calculated)
-0.272
Length
674 amino acids
Sequence
(BLAST)
(BLAST)
001: MAQGELKSSV LNRKRNPKSP VASRSSKKQK IAEHRKSLPI ASEEERLIEA VQKNDILIIV GETGSGKTTQ LPQFLFNAGF CREGKMVGIT QPRRIAALTI
101: AKRVAEECDV PLGQKVGYSV RFDDTTSSST RLKYMTDGFL LREALVDRLL SRYSVIIIDE AHERTVHTDV LLALLKKVQR ERSEIGGVLR GCQGRKVSPL
201: KLIIMSASLD ARVFCDYYGG AKDFHVEGRQ FDVDIFYTVH PQTDYVDAAL NTIFQIHSEE EEGDILVFLT GQEEIESVER LVQEKLKHLP EDERKLLPLA
301: IFSALPSEQQ MRVFAPAPIG FRKVVLATNI AETSITIPGI RYVVDSGVVK ARTYDPNKGM ETLDVVPVSK AQAIQRSGRA GRDGYGKSFH LYPERDFWKL
401: EDSTKPEIKR CNLSNVILQL KALGIDDILG FDFIDKPSRY AIVKALAELH LLGALTDDCK LAKPAGEQMA RLPLEPVYSR ALILANQFNC LEEMLIIVAM
501: LSARTSRNHF VSVEGDHLTY LSVYRELDEF LEERKAEKSE AKVEKIMRKW CKVNFVNSRS LKHARDIYRQ IRGNVEQMGF NVSSCGNDML EYRRCIAASF
601: FLKAAQRQMD GTYRALESGE IVHIHPSSVL FRSKPECVIF DELMQTSQKY INNLTRIDPL WLAELAPHHY KTEE
101: AKRVAEECDV PLGQKVGYSV RFDDTTSSST RLKYMTDGFL LREALVDRLL SRYSVIIIDE AHERTVHTDV LLALLKKVQR ERSEIGGVLR GCQGRKVSPL
201: KLIIMSASLD ARVFCDYYGG AKDFHVEGRQ FDVDIFYTVH PQTDYVDAAL NTIFQIHSEE EEGDILVFLT GQEEIESVER LVQEKLKHLP EDERKLLPLA
301: IFSALPSEQQ MRVFAPAPIG FRKVVLATNI AETSITIPGI RYVVDSGVVK ARTYDPNKGM ETLDVVPVSK AQAIQRSGRA GRDGYGKSFH LYPERDFWKL
401: EDSTKPEIKR CNLSNVILQL KALGIDDILG FDFIDKPSRY AIVKALAELH LLGALTDDCK LAKPAGEQMA RLPLEPVYSR ALILANQFNC LEEMLIIVAM
501: LSARTSRNHF VSVEGDHLTY LSVYRELDEF LEERKAEKSE AKVEKIMRKW CKVNFVNSRS LKHARDIYRQ IRGNVEQMGF NVSSCGNDML EYRRCIAASF
601: FLKAAQRQMD GTYRALESGE IVHIHPSSVL FRSKPECVIF DELMQTSQKY INNLTRIDPL WLAELAPHHY KTEE
001: MPSMAQGELK SFVQNSRPNP KSPTVSPFSM RQKIAEHRRS LPIASVEKRL VEEVQKNDIL IIVGETGSGK TTQLPQFLYN AGFCREGKMI GITQPRRIAA
101: VTVAKRVAEE CEVQLGQKVG YSIRFDDTTS GSTRLKYMTD GLLLREALLD PHLSRYSVII VDEAHDRSVH TDVLLALLKK IQRTRSQPVS EKTEFGNVAS
201: QVQTTTRDAN GPQQNGVLKG YQGRKLSPLK LIIMSASLDA RVFSEYFGGA KAVHVQGRQF PVDILYTVHP ESDYVDATLV TIFQIHFEEK PGDILVFLTG
301: QDEIESVERL VQERLQNIPE DKRKLLPLAI FSALPSEQQM KVFAPAPTGF RKVILATNIA ETSITIPGIR YVIDPGFVKA RSYDPSKGME SLDVVPASKA
401: QTLQRSGRAG REGPGKSFRL YPEREFEKLE DSTKPEIKRC NLSNIILQLK ALGIDDIVGF DFIDKPSRGA IIKALAELHS LGALADDGKL ENPVGYQMSR
501: LPLEPVYSKA LILANQFNCL EEMLITVAVL SVESIFYDPR EKREEARTSK NHFASVEGDH LTYLSVYRES DEFLEKRKAA GSGNNIDKIM KKWCKENYVN
601: SRSLKHARDI YRQIREHVEQ IGFNVSSCGN DMLAFRRCLA ASFFLKAAQR QLDGTYRALE SGEVVHIHPT SVLFRAKPEC VIFNELMQTS KKYIKNLTII
701: DSLWLSELAP HHFQTAE
101: VTVAKRVAEE CEVQLGQKVG YSIRFDDTTS GSTRLKYMTD GLLLREALLD PHLSRYSVII VDEAHDRSVH TDVLLALLKK IQRTRSQPVS EKTEFGNVAS
201: QVQTTTRDAN GPQQNGVLKG YQGRKLSPLK LIIMSASLDA RVFSEYFGGA KAVHVQGRQF PVDILYTVHP ESDYVDATLV TIFQIHFEEK PGDILVFLTG
301: QDEIESVERL VQERLQNIPE DKRKLLPLAI FSALPSEQQM KVFAPAPTGF RKVILATNIA ETSITIPGIR YVIDPGFVKA RSYDPSKGME SLDVVPASKA
401: QTLQRSGRAG REGPGKSFRL YPEREFEKLE DSTKPEIKRC NLSNIILQLK ALGIDDIVGF DFIDKPSRGA IIKALAELHS LGALADDGKL ENPVGYQMSR
501: LPLEPVYSKA LILANQFNCL EEMLITVAVL SVESIFYDPR EKREEARTSK NHFASVEGDH LTYLSVYRES DEFLEKRKAA GSGNNIDKIM KKWCKENYVN
601: SRSLKHARDI YRQIREHVEQ IGFNVSSCGN DMLAFRRCLA ASFFLKAAQR QLDGTYRALE SGEVVHIHPT SVLFRAKPEC VIFNELMQTS KKYIKNLTII
701: DSLWLSELAP HHFQTAE
Arabidopsis Description
RID1Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 [Source:UniProtKB/Swiss-Prot;Acc:F4IE66]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.