CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, vacuole

Predictor Summary:

plastid 3
extracellular 2
endoplasmic reticulum 2
vacuole 3
plasma membrane 2
golgi 2
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid, vacuole
Any Predictor:	mitochondrion, nucleus, plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	nucleus
Predotar:	secretory
PProwler:	plastid
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra023043.1-P	Field mustard	nucleus	95.17	99.0
CDX79642	Canola	nucleus, vacuole	98.84	98.84
AT2G35920.3	Thale cress	plastid	89.66	90.36
GSMUA_Achr8P12550_001	Banana	cytosol	35.07	79.78
Zm00001d045376_P001	Maize	cytosol	25.02	78.48
PGSC0003DMT400055058	Potato	nucleus	63.19	76.58
KRH72171	Soybean	nucleus	65.7	75.56
KRH32860	Soybean	mitochondrion, nucleus, plastid	74.4	74.76
VIT_08s0032g01230.t01	Wine grape	nucleus, plastid	73.62	74.34
Solyc01g006970.2.1	Tomato	nucleus	73.82	74.1
HORVU1Hr1G039880.1	Barley	nucleus	66.76	73.12
Os10t0471350-01	Rice	nucleus	69.86	72.44
Zm00001d032735_P001	Maize	plastid	70.53	70.6
KXG38358	Sorghum	nucleus	70.14	70.08
TraesCS1A01G151100.1	Wheat	nucleus	69.66	70.07
TraesCS1D01G148100.2	Wheat	nucleus	69.66	70.07
TraesCS1B01G168700.3	Wheat	nucleus	69.76	70.03
Zm00001d019056_P001	Maize	nucleus	13.43	69.5
GSMUA_Achr8P12540_001	Banana	nucleus	32.17	60.33
CDX98799	Canola	mitochondrion	45.7	40.99
CDX70187	Canola	mitochondrion	45.6	40.83
CDY17694	Canola	nucleus	42.51	38.77
CDY57512	Canola	nucleus	42.03	38.33
CDY40601	Canola	nucleus, plastid	43.19	37.85
CDX93688	Canola	plastid	43.09	37.8
CDX74059	Canola	nucleus	9.57	37.5
CDX74061	Canola	cytosol	11.21	36.14
CDY68405	Canola	nucleus	22.42	34.63
CDX76626	Canola	nucleus	22.42	32.31
CDY11413	Canola	nucleus	22.42	32.31
CDX95715	Canola	cytosol	22.51	32.14
CDX83337	Canola	cytosol	22.42	32.09
CDX78859	Canola	nucleus	20.87	30.95
CDX99466	Canola	nucleus	20.87	30.86
CDY23338	Canola	cytosol	12.46	30.57
CDY34567	Canola	nucleus	19.52	30.47
CDY36075	Canola	nucleus	19.42	29.82
CDX85017	Canola	cytosol, plastid	20.68	29.64
CDY37024	Canola	cytosol, mitochondrion	9.28	29.63
CDY16154	Canola	nucleus, plastid	20.58	29.46
CDX90112	Canola	nucleus	20.0	29.36
CDY11762	Canola	nucleus	19.9	29.26
CDY10756	Canola	nucleus	30.43	28.93
CDY32702	Canola	nucleus	19.03	28.47
CDY02818	Canola	nucleus	17.87	27.86
CDY60185	Canola	nucleus	22.71	27.36
CDY40514	Canola	nucleus	22.61	27.18
CDY39917	Canola	nucleus	35.07	25.69
CDY29164	Canola	nucleus	35.17	25.56
CDY10215	Canola	nucleus	31.11	25.08
CDX97797	Canola	nucleus	30.82	24.71
CDY29644	Canola	nucleus	31.01	24.56
CDY32278	Canola	endoplasmic reticulum	24.35	24.14
CDY26898	Canola	nucleus	24.35	24.14
CDX83624	Canola	nucleus	24.54	22.78
CDY13640	Canola	nucleus	24.64	22.67
CDY63687	Canola	nucleus, plastid	23.57	21.98
CDY23802	Canola	nucleus	10.43	20.57
CDX91151	Canola	nucleus	23.38	19.38
CDX85676	Canola	nucleus	23.29	19.31
CDY51663	Canola	nucleus	1.06	17.46
CDX91491	Canola	nucleus	1.06	17.46
CDY48353	Canola	nucleus	20.1	17.01
CDY34159	Canola	nucleus	20.0	16.73
CDX69841	Canola	plastid	22.03	12.9
CDX96996	Canola	nucleus	21.64	12.66
CDX78376	Canola	plastid	21.45	12.64
CDX81170	Canola	plastid	21.26	12.48

Protein Annotations

Gene3D:1.20.120.1080	Gene3D:3.40.50.300	MapMan:35.1	GO:A0A078DB92	EnsemblPlants:CDX84588	ProteinID:CDX84588
ProteinID:CDX84588.1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DNA/RNA_helicase_DEAH_CS	InterPro:DUF1605	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524
GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00141847001	InterPro:Helicase-assoc_dom	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF04408	PFAM:PF07717
ScanProsite:PS00690	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR18934	PANTHER:PTHR18934:SF191	SMART:SM00487
SMART:SM00490	SMART:SM00847	SUPFAM:SSF52540	UniParc:UPI0004EE37B1	SEG:seg	:

Description

BnaA03g16420D

Coordinates

chrLK031838:-:218112..222802

Molecular Weight (calculated)

115001.0 Da

IEP (calculated)

8.346

GRAVY (calculated)

-0.342

Length

1035 amino acids

Sequence
(BLAST)

0001: MHLASLSTLS TLRFLLPLSP KLFPLPSLFR ISSMGPNSQG GRRGGGFSSN RGGGRRGGGR GGGGGGGRGG GGGRGEQRWW DPVWRAERLR QQQAEMEVFD
0101: ENEWWNKIEQ MKTGGEQEMV IKRNFSRGDQ QTLGDMAYQM GLYFHAYNKG KALVVSKVPL PDYRADLDDR HGSTQKEIQM SSETERKLGS LLKTTQQVGS
0201: SNASSSGSND QRDSTSALGL KKSDSASKFS DSHEKEKFSV ALKDKQDKLK ATESVKALHA FREKLPAFKM KQGFLNSVSE NQVLVVSGET GCGKTTQLPQ
0301: FILEEEISSL RGADCNIICT QPRRISAISV ASRISAERGE PIGESVGYQI RLESKRSDQT RLLFCTTGVL LRRLIEDPNL SGVSHLLVDE IHERGMNEDF
0401: LLIILRDLLP RRPDLRLVLM SATINADMFS TYFGNAPTMH IPGFTFPVTE LFLEDVLEKS RYTIKPSDSG NYQGGSRGRR RDSESKKEDL TTLFEDIDIN
0501: VHYKSYSSAT RVSLESWSGA QIDLELVEAT IEHICRGEGD GAILVFLTGW DEISKLLENI KGNRLLGDSS KFLVLPLHGS MPTVNQREIF ERPPPNKRKI
0601: VLATNIAESS ITIDDVVYVV DCGKAKETSY DALNKVACLL PSWISKASAH QRRGRAGRVQ AGVCYRLYPK VIYDAFPQYQ LPEIIRTPLQ ELCLHIKSLQ
0701: VGSIGSFLAK ALQPPDALAV ENAIELLKTI GALDDTEELT PLGRHLCTLP VDPNIGKMLL IGAIFQCVNP ALTIASALAY RSPFVLPLNR KEEADEAKRY
0801: FAGDSCSDHI ALVKAFEGYR DAKRGGHERD FCWENFLSPL TLKMMEDMRN QFLDLLSDIG FVDKSRGPNV YNQYSQDMEM VTAVLCAGLY PNVVQCKRRG
0901: KRTAFYTKEL GKVDIHPGSV NARVNLFSLP YLVYSEKVKT TSVYIRDSTN ISDYALLMFG GSLMPSQTGE GIEMLGGYLH FSASKNVLEL IQRLRGEVDK
1001: LLNRKIEDPS LDITVEGKGV VSAVVELLRS RNIRY

Best Arabidopsis Sequence Match ( AT2G35920.3 )
(BLAST)

0001: MQQSLSCFST LRFLLPFSSK LSPLRPLFHT AAMPPHGPNS QGGRRGGGHS SGRRGGRGGG GRGGGGGGRG EQRWWDPVWR AERLRQQQAE MEVLDENEWW
0101: NKIEQWKTGG EQEMLIKRNF SRGDQQTLSD MALQMGLYFH AYNKGKALVV SKVPLPDYRA DLDERHGSTQ KEIKMSTETE RKLGSLLKTT QESGSSGASA
0201: SAFNDQQDRT STLGLKRPDS ASKLPDSLEK EKFSFALKER QEKLKATESV KALKAFREKL PAFKMKEEFL NSVSQNQVLV VSGETGCGKT TQLPQFILEE
0301: EISSLRGADC NIICTQPRRI SAISVASRIS AERGESIGES VGYQIRLESK RSDQTRLLFC TTGVLLRRLI EDPNLTNVSH LLVDEIHERG MNEDFLLIIL
0401: RDLLPRRPDL RLILMSATIN ADMFSTYFGN SPTMHIPGFT FPVAELFLED VLEKSRYNIK SSDSGNYQGS SRGRRRESES KKDDLTTLFE DIDINSHYKS
0501: YSSATRNSLE AWSGAQIDVD LVEATIEHIC RLEGGGAILV FLTGWDEISK LLEKINMNNF LGDSSKFLVL PLHGSMPTVN QREIFDRPPP NKRKIVLATN
0601: IAESSITIDD VVYVVDCGKA KETSYDALNK VACLLPSWIS KASAHQRRGR AGRVQAGVCY RLYPKVIYDA FPQYQLPEII RTPLQELCLH IKSLQVGSIG
0701: SFLAKALQPP DALAVENAIE LLKTIGALND VEELTPLGRH LCTLPVDPNI GKMLLIGAIF QCVNPALTIA AALAYRSPFV LPLNRKEEAD EAKRYFAGDS
0801: CSDHIALLKA YEGYRDAKRG GNEKDFCWQN FLSPVTLRMM EDMRNQFLDL LSDIGFVDKS KPNAYNQYSY DMEMISAVLC AGLYPNVVQC KRRGKRTAFY
0901: TKELGKVDIH PGSVNARVNL FSLPYLVYSE KVKTTSVYIR DSTNISDYAL LMFGGNLIPS KTGEGIEMLG GYLHFSASKN ILELIQRLRG EVDKLLNKKI
1001: EDPSLDITVE GKGVVSAVVE LLRSQKH

Arabidopsis Description

RNA helicase family protein [Source:TAIR;Acc:AT2G35920]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.