Factsheet for Bra023043.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX84588	Canola	plastid, vacuole	99.0	95.17
CDX79642	Canola	nucleus, vacuole	98.49	94.69
AT2G35920.3	Thale cress	plastid	91.26	88.41
GSMUA_Achr8P12550_001	Banana	cytosol	36.48	79.78
Zm00001d045376_P001	Maize	cytosol	26.13	78.79
PGSC0003DMT400055058	Potato	nucleus	65.63	76.46
KRH72171	Soybean	nucleus	68.54	75.78
KRH32860	Soybean	mitochondrion, nucleus, plastid	76.88	74.27
VIT_08s0032g01230.t01	Wine grape	nucleus, plastid	76.08	73.85
Solyc01g006970.2.1	Tomato	nucleus	76.18	73.52
HORVU1Hr1G039880.1	Barley	nucleus	69.55	73.23
Os10t0471350-01	Rice	nucleus	72.76	72.55
Zm00001d019056_P001	Maize	nucleus	14.07	70.0
TraesCS1A01G151100.1	Wheat	nucleus	72.26	69.87
TraesCS1D01G148100.2	Wheat	nucleus	72.26	69.87
TraesCS1B01G168700.3	Wheat	nucleus	72.36	69.84
Zm00001d032735_P001	Maize	plastid	72.46	69.73
KXG38358	Sorghum	nucleus	72.26	69.4
GSMUA_Achr8P12540_001	Banana	nucleus	33.27	59.96
Bra009414.1-P	Field mustard	mitochondrion	47.14	40.61
Bra024903.1-P	Field mustard	nucleus	43.92	38.5
Bra001238.1-P	Field mustard	cytosol, mitochondrion	10.05	37.88
Bra001237.1-P	Field mustard	cytosol	16.28	37.5
Bra018747.1-P	Field mustard	plastid	44.42	37.46
Bra003744.1-P	Field mustard	nucleus	23.32	34.63
Bra040328.1-P	Field mustard	cytosol, mitochondrion	7.34	34.11
Bra007671.1-P	Field mustard	nucleus	23.42	32.45
Bra000445.1-P	Field mustard	cytosol	23.32	32.09
Bra013313.1-P	Field mustard	nucleus	21.91	31.28
Bra011023.1-P	Field mustard	nucleus	20.4	29.46
Bra010915.1-P	Field mustard	nucleus	20.8	29.36
Bra024720.1-P	Field mustard	nucleus	21.31	28.8
Bra038498.1-P	Field mustard	nucleus	23.62	26.08
Bra021665.1-P	Field mustard	nucleus	32.26	24.6
Bra018293.1-P	Field mustard	plasma membrane, vacuole	32.26	24.32
Bra010168.1-P	Field mustard	nucleus	25.03	23.85
Bra027890.1-P	Field mustard	nucleus	31.36	23.46
Bra025211.1-P	Field mustard	nucleus	25.23	21.43
Bra023387.1-P	Field mustard	nucleus	24.32	19.39
Bra040091.1-P	Field mustard	nucleus	14.47	18.2
Bra032998.1-P	Field mustard	nucleus	20.6	16.57
Bra009038.1-P	Field mustard	plastid	22.81	12.85
Bra006057.1-P	Field mustard	plastid	22.31	12.65

Protein Annotations

Gene3D:1.20.120.1080	Gene3D:3.40.50.300	MapMan:35.1	EnsemblPlantsGene:Bra023043	EnsemblPlants:Bra023043.1	EnsemblPlants:Bra023043.1-P
ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DNA/RNA_helicase_DEAH_CS	InterPro:DUF1605	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787
InterPro:Helicase-assoc_dom	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	UniProt:M4E2P2
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF04408	PFAM:PF07717	ScanProsite:PS00690
PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR18934	PANTHER:PTHR18934:SF191	SMART:SM00487	SMART:SM00490
SMART:SM00847	SUPFAM:SSF52540	UniParc:UPI000253FE9F	SEG:seg	:	:

Description

AT2G35920 (E=0.0) | helicase domain-containing protein

Coordinates

chrA03:+:8354968..8359320

Molecular Weight (calculated)

110904.0 Da

IEP (calculated)

7.929

GRAVY (calculated)

-0.378

Length

995 amino acids

Sequence
(BLAST)

001: MGPNSQGGRR GGGFSSNRGG GRRGGRGGGG GRGGGGGRGE QRWWDPVWRA ERLRQQQAEM EVFDENEWWN KIEQMKTGGE QEMVIKRNFS RGDQQTLGDM
101: AYQMGLYFHA YNKGKALVVS KVPLPDYRAD LDDRHGSTQK EIQMSSETER KLGSLLKTTQ QVGSTSGSND QQDRTSAIGV KKSDSASKFS DSHEKEKFSV
201: ALKDRQDKLK ATESVKALHA FREKLPAFKM KQDFLTSVSE NQVLVVSGET GCGKTTQLPQ FILEEEISSL RGADCNIICT QPRRISAISV ASRISAERGE
301: PIGESVGYQI RLESKRSDQT RLLFCTTGVL LRRLIEDPNL SGVSHLLVDE IHERGMNEDF LLIILRDLLP RRPDLRLVLM SATINADMFS TYFGNAPTMH
401: IPGFTFPVTE LFLEDVLEKS RYTIKPSDSG NYQGGSRGRR RDSESKKDDL TTLFEDIDIN VHYKSYSSAT RVSLESWSGA QIDLELVEAT IEHICRGEGD
501: GAILVFLTGW DEISKLLENI KGNRLLGDSS KFLVLPLHGS MPTVNQREIF ERPPPNKRKI VLATNIAESS ITIDDVVYVV DCGKAKETSY DALNKVACLL
601: PSWISKASAH QRRGRAGRVQ AGVCYRLYPK VIYDAFPQYQ LPEIIRTPLQ ELCLHIKSLQ VGSIGSFLAK ALQPPDALAV ENAIELLKTI GALDDTEELT
701: PLGRHLCTLP VDPNIGKMLL IGAIFQCVNP ALTIASALAY RSPFVLPLNR KEEADEAKRY FAGDSCSDHI ALVKAFEGYR DAKRGGHERD FCWENFLSPL
801: TLKMMEDMRN QFLDLLSDIG FVDKSRGPNV YNQYSQDMEM VTAVLCAGLY PNVVQCKRRG KRTAFYTKEL GKVDIHPGSV NARVNLFSLP YLVYSEKVKT
901: TSVYIRDSTN ISDYALLMFG GSLMPSQTGE GIEMLGGYLH FSASKNVLEL IQRLRGEVDK LLNRKIEDPS LDITVEGKGV VSAVVELLRS RNIRY

Best Arabidopsis Sequence Match ( AT2G35920.1 )
(BLAST)

001: MPPHGPNSQG GRRGGGHSSG RRGGRGGGGR GGGGGGRGEQ RWWDPVWRAE RLRQQQAEME VLDENEWWNK IEQWKTGGEQ EMLIKRNFSR GDQQTLSDMA
101: LQMGLYFHAY NKGKALVVSK VPLPDYRADL DERHGSTQKE IKMSTETERK LGSLLKTTQE SGSSGASASA FNDQQDRTST LGLKRPDSAS KLPDSLEKEK
201: FSFALKERQE KLKATESVKA LKAFREKLPA FKMKEEFLNS VSQNQVLVVS GETGCGKTTQ LPQFILEEEI SSLRGADCNI ICTQPRRISA ISVASRISAE
301: RGESIGESVG YQIRLESKRS DQTRLLFCTT GVLLRRLIED PNLTNVSHLL VDEIHERGMN EDFLLIILRD LLPRRPDLRL ILMSATINAD MFSTYFGNSP
401: TMHIPGFTFP VAELFLEDVL EKSRYNIKSS DSGNYQGSSR GRRRESESKK DDLTTLFEDI DINSHYKSYS SATRNSLEAW SGAQIDVDLV EATIEHICRL
501: EGGGAILVFL TGWDEISKLL EKINMNNFLG DSSKFLVLPL HGSMPTVNQR EIFDRPPPNK RKIVLATNIA ESSITIDDVV YVVDCGKAKE TSYDALNKVA
601: CLLPSWISKA SAHQRRGRAG RVQAGVCYRL YPKVIYDAFP QYQLPEIIRT PLQELCLHIK SLQVGSIGSF LAKALQPPDA LAVENAIELL KTIGALNDVE
701: ELTPLGRHLC TLPVDPNIGK MLLIGAIFQC VNPALTIAAA LAYRSPFVLP LNRKEEADEA KRYFAGDSCS DHIALLKAYE GYRDAKRGGN EKDFCWQNFL
801: SPVTLRMMED MRNQFLDLLS DIGFVDKSKP NAYNQYSYDM EMISAVLCAG LYPNVVQCKR RGKRTAFYTK ELGKVDIHPG SVNARVNLFS LPYLVYSEKV
901: KTTSVYIRDS TNISDYALLM FGGNLIPSKT GEGIEMLGGY LHFSASKNIL ELIQRLRGEV DKLLNKKIED PSLDITVEGK GVVSAVVELL RSQKH

Arabidopsis Description

RNA helicase family protein [Source:TAIR;Acc:AT2G35920]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.