Factsheet for Bra003744.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY68405	Canola	nucleus	98.66	98.66
Bra000445.1-P	Field mustard	cytosol	83.13	77.04
Bra007671.1-P	Field mustard	nucleus	82.24	76.74
KRH68290	Soybean	nucleus	81.19	75.56
KRG96553	Soybean	nucleus	81.19	75.45
KRH69191	Soybean	nucleus	81.19	75.35
TraesCS4A01G124200.2	Wheat	cytosol	80.0	74.55
PGSC0003DMT400023284	Potato	nucleus	80.3	74.41
TraesCS4D01G181700.1	Wheat	cytosol	80.0	74.34
TraesCS4B01G180200.1	Wheat	cytosol	80.0	74.34
HORVU4Hr1G052730.3	Barley	cytosol	80.0	74.34
Solyc01g079250.2.1	Tomato	nucleus	80.15	74.27
VIT_07s0005g01770.t01	Wine grape	nucleus	80.6	74.18
KXG39505	Sorghum	cytosol	79.55	73.82
Zm00001d028923_P002	Maize	nucleus	78.36	72.82
KRH31768	Soybean	cytosol, nucleus	61.94	71.92
Os03t0314100-01	Rice	cytosol, nucleus, plastid	58.06	68.97
Zm00001d047601_P006	Maize	nucleus	78.81	68.31
GSMUA_Achr1P18470_001	Banana	cytosol	36.27	68.26
Bra001237.1-P	Field mustard	cytosol	41.19	63.89
Bra001238.1-P	Field mustard	cytosol, mitochondrion	24.33	61.74
Bra040328.1-P	Field mustard	cytosol, mitochondrion	15.82	49.53
Bra013313.1-P	Field mustard	nucleus	43.88	42.18
Bra011023.1-P	Field mustard	nucleus	41.34	40.2
Bra024720.1-P	Field mustard	nucleus	42.84	38.99
Bra010915.1-P	Field mustard	nucleus	40.15	38.16
Bra038498.1-P	Field mustard	nucleus	48.66	36.18
Bra010168.1-P	Field mustard	nucleus	50.0	32.09
Bra025211.1-P	Field mustard	nucleus	50.15	28.69
Bra023043.1-P	Field mustard	nucleus	34.63	23.32
Bra023387.1-P	Field mustard	nucleus	43.13	23.16
Bra040091.1-P	Field mustard	nucleus	26.72	22.63
Bra009414.1-P	Field mustard	mitochondrion	35.37	20.52
Bra018747.1-P	Field mustard	plastid	35.82	20.34
Bra024903.1-P	Field mustard	nucleus	33.88	20.0
Bra032998.1-P	Field mustard	nucleus	34.78	18.84
Bra021665.1-P	Field mustard	nucleus	30.3	15.56
Bra018293.1-P	Field mustard	plasma membrane, vacuole	30.3	15.38
Bra027890.1-P	Field mustard	nucleus	25.22	12.71
Bra006057.1-P	Field mustard	plastid	32.54	12.42
Bra009038.1-P	Field mustard	plastid	32.54	12.34

Protein Annotations

Gene3D:1.20.120.1080	MapMan:16.4.7.3.3	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra003744	EnsemblPlants:Bra003744.1	EnsemblPlants:Bra003744.1-P
InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DUF1605	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824
GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787	InterPro:Helicase-assoc_dom	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	UniProt:M4CHR1	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	PFAM:PF04408	PFAM:PF07717	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR18934
PANTHER:PTHR18934:SF193	SMART:SM00487	SMART:SM00490	SMART:SM00847	SUPFAM:SSF52540	UniParc:UPI00025415C7
SEG:seg	:	:	:	:	:

Description

AT3G62310 (E=3e-310) | RNA helicase, putative

Coordinates

chrA07:+:14812830..14814842

Molecular Weight (calculated)

76008.6 Da

IEP (calculated)

7.136

GRAVY (calculated)

-0.312

Length

670 amino acids

Sequence
(BLAST)

001: MEKNKWSGKA YSQRYYEILE KRKSLPVYAQ KQEFLQCLMS NQTLILVGET GSGKTTQIPQ FVLEAVNEKN PSKWLVGCTQ PRRVAAMSVA SRVAEEMDVA
101: IGEEVGYSVR FEDCTSSKTV LKYLTDGMLM REAMTDPLLQ RYKVIVLDEA HERTLATDLL FGVLKRVLSN RPDLKLVVMS ATLEAEKCLE YFSGAPLMKV
201: PGRLHPVEIL YTQEPERDYL DAAIRTVVQI HMSEPPGDVL VFLTGEEEIE DACRKIVCEL GDQVNVVPLY SSLPPAMQQK IFDPPTENVR KIVVSTNIAE
301: TSLTIDGVVY VVDPGFAKQK LYNPETRVES LLVSAISQAS ANQRAGRAGR TRPGKCFRLY TEKSFNHDLI EQTYPEILRS NLANTVLTLK KLGIDNLVCF
401: DYMDPPAPVT MGRALNDLLD LGALDEELNL TRTGEMMSEF PLDPQMAKML IVSPKFNCSN EILSISAMLS VPNCFVRPRG EAQKAADEAR ARFGHTDGDH
501: LTLLNVYHDY KQNNGDPNWC YQNFINHRAM KSADNVREQL VRIMSRFNLK TCSSDFTSRD YYINIRKALL AGYFMQVAHL DRTGHYLTAK DGQMVHLHPS
601: CCLDHKPEWV VYNEYVLTSR NFIRTVTYIR GEWLVDVAPD YYHLSNFPNC EAKRVLQKLS KKRDRAGNPK

Best Arabidopsis Sequence Match ( AT2G47250.1 )
(BLAST)

001: MGTERKRKVS LFDVMEDPSL SSKNTKSNGL GLAAAAGGGS NLINKWNGKA YSQRYFEILE KRRDLPVWLQ KDDFLNTLNS NQTLILVGET GSGKTTQIPQ
101: FVLDAVVADN SDKGRKWLVG CTQPRRVAAM SVSRRVADEM DVSIGEEVGY SIRFEDCTSS RTMLKYLTDG MLLREAMADP LLERYKVIIL DEAHERTLAT
201: DVLFGLLKEV LRNRPDLKLV VMSATLEAEK FQEYFSGAPL MKVPGRLHPV EIFYTQEPER DYLEAAIRTV VQIHMCEPPG DILVFLTGEE EIEDACRKIN
301: KEVSNLGDQV GPVKVVPLYS TLPPAMQQKI FDPAPVPLTE GGPAGRKIVV STNIAETSLT IDGIVYVIDP GFAKQKVYNP RIRVESLLVS PISKASAHQR
401: SGRAGRTRPG KCFRLYTEKS FNNDLQPQTY PEILRSNLAN TVLTLKKLGI DDLVHFDFMD PPAPETLMRA LEVLNYLGAL DDEGNLTKTG EIMSEFPLDP
501: QMSKMLIVSP EFNCSNEILS VSAMLSVPNC FVRPREAQKA ADEAKARFGH IDGDHLTLLN VYHAYKQNNE DPNWCFENFV NNRAMKSADN VRQQLVRIMS
601: RFNLKMCSTD FNSRDYYVNI RKAMLAGYFM QVAHLERTGH YLTVKDNQVV HLHPSNCLDH KPEWVIYNEY VLTTRNFIRT VTDIRGEWLV DVAQHYYDLS
701: NFPNCEAKRA LEKLYKKRER EKNESKNRK

Arabidopsis Description

Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH3 [Source:UniProtKB/Swiss-Prot;Acc:O22899]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.