Factsheet for Bra024903.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17694	Canola	nucleus	99.03	99.03
AT2G01130.1	Thale cress	nucleus	83.26	84.91
VIT_01s0011g04360.t01	Wine grape	plastid	74.54	71.63
KRH38164	Soybean	nucleus	67.93	69.96
Solyc04g007510.2.1	Tomato	plastid	70.66	69.5
Bra018747.1-P	Field mustard	plastid	63.61	61.19
Bra009414.1-P	Field mustard	mitochondrion	56.48	55.5
Bra023043.1-P	Field mustard	nucleus	38.5	43.92
Bra001237.1-P	Field mustard	cytosol	13.22	34.72
Bra003744.1-P	Field mustard	nucleus	20.0	33.88
Bra040328.1-P	Field mustard	cytosol, mitochondrion	6.34	33.64
Bra000445.1-P	Field mustard	cytosol	20.62	32.37
Bra007671.1-P	Field mustard	nucleus	20.35	32.17
Bra001238.1-P	Field mustard	cytosol, mitochondrion	7.4	31.82
Bra010915.1-P	Field mustard	nucleus	19.03	30.64
Bra013313.1-P	Field mustard	nucleus	18.68	30.42
Bra011023.1-P	Field mustard	nucleus	18.24	30.04
Bra024720.1-P	Field mustard	nucleus	17.97	27.72
Bra038498.1-P	Field mustard	nucleus	20.79	26.19
Bra021665.1-P	Field mustard	nucleus	29.25	25.44
Bra018293.1-P	Field mustard	plasma membrane, vacuole	28.9	24.85
Bra010168.1-P	Field mustard	nucleus	22.2	24.14
Bra027890.1-P	Field mustard	nucleus	26.26	22.41
Bra025211.1-P	Field mustard	nucleus	21.59	20.92
Bra023387.1-P	Field mustard	nucleus	22.11	20.11
Bra032998.1-P	Field mustard	nucleus	19.47	17.87
Bra040091.1-P	Field mustard	nucleus	12.07	17.32
Bra006057.1-P	Field mustard	plastid	22.47	14.53
Bra009038.1-P	Field mustard	plastid	22.2	14.26

Protein Annotations

Gene3D:1.20.120.1080	Gene3D:3.30.160.20	Gene3D:3.40.50.300	MapMan:35.1	EnsemblPlantsGene:Bra024903	EnsemblPlants:Bra024903.1
EnsemblPlants:Bra024903.1-P	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DUF1605	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787
InterPro:Helicase-assoc_dom	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014720
UniProt:M4E7Z7	InterPro:P-loop_NTPase	PFAM:PF00035	PFAM:PF00270	PFAM:PF00271	PFAM:PF04408
PFAM:PF07717	PFscan:PS50137	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR18934	PANTHER:PTHR18934:SF146
SMART:SM00358	SMART:SM00487	SMART:SM00490	SMART:SM00847	SUPFAM:SSF52540	SUPFAM:SSF54768
UniParc:UPI000253FA0D	InterPro:dsRBD_dom	SEG:seg	:	:	:

Description

AT2G01130 (E=0.0) | ATP binding / ATP-dependent helicase/ RNA binding / double-stranded RNA binding / helicase/ nucleic acid binding

Coordinates

chrA06:+:24201016..24206669

Molecular Weight (calculated)

127466.0 Da

IEP (calculated)

8.533

GRAVY (calculated)

-0.272

Length

1135 amino acids

Sequence
(BLAST)

0001: MKDRLPPPSL YVPPHQRLRS TPPAYAFHPL PLPHTQSQKP PLLPTRFVSA YDDSVSEVAS LPEPVAFHCA NLDEWRRNLS MLLRDPVKQE VISREKKDRR
0101: DFDKLAALAT SLGLYSQAYA KVVVFSKIPL PNYRFDLDDK RPLREVSVHT DLVKRVDAYF KDHLSKKSKR TNGIPANSFS RTSSTSSMFT DEGLLEQPEL
0201: PAASKTALDK ILWQRSLQLR ERQDYWEKSV EGQRMLECRR CLPAYKQRDV VLSAISQNQV IVVSGETGCG KTTQIPQFIL ESEIEANRGA LCSIICTQPR
0301: KISAMSVSER VACERGEPLG ESVGYKVRLE GVRGRDTRLL FCTTGILLRR LLVDRSLRGV THVIVDEIHE RGMNEDFLLI ILKDLLPRRP ELKLILMSAT
0401: LDAELFSSYF GGAGVIHIPG FTYPVGSYFL EDILEMSRYR LTPYNQIDDY GQERLWKMNK QIPRKRKSQI ASVVEDALRA ADFKEFSPET RESLSCWNPD
0501: CIGFNLIESL LRHICENERP GGILVFMTGW DDISSLKDKL QIHPIFSDPN RVMLLACHGS MASFEQRLIF EEPASGVRKI VLATNIAETS ITINDVAFVI
0601: DCGKAKETSY DALNNTPCLL PSWISKVSAQ QRRGRAGRVQ PGQCYHLYPK CVYDAFSEYQ LPEILRTPLQ SLCLQIKSLN FGTISEFLSR ALQSPELLAV
0701: QKAIEYLKTI GALDENEQLT ALGRYLAKLP MEPKLGKMLI LGAILGCLDP ILTVAAGLSV RDPFLTPLDK KDLAEAAKSQ FSRDHSDHLA LVRAYEGYKR
0801: AEEEAGVYDY CWKNFLSIQS MRAVDSLRKE FFSLLKDTGL IDGTPATCKS GGNDENLTRA VICYGLYPGI CSVVHNERAF SLKTMEDGQV LLYSNSVNAR
0901: ETKIPYPWLV FNEKIKVNSI FVRDSTAVSD SVLILFGGSV SKGDFDGHLK MLGGYLDFFM KPAVAEMYQT LKKELDELIQ SKLLNPKMDI QAHRDLLLAV
1001: RLLVSEDRCD GSFVFGRQAL KPLGTSAVST QPTLVSRTES GPGGDNSKSQ LQTMLTRAGH AAPMYKTKQL KNSKFQSTVE FNGTQIMGQP CSNKKTAEKD
1101: AAAEAIRWLM GGAKESHEHV NHMSNLLKRS KKVHL

Best Arabidopsis Sequence Match ( AT2G01130.1 )
(BLAST)

0001: MTNRLPPSLY VPPHQRLGSD YGFNPVPLSP VRYVSAYDDR VSEDRQPQEG TFHCADLDDW NKRFSMLLKD SLKQEVISRE KKDRRDFDKL AALATTLGLY
0101: SHAYAKVVVF SKIPLPNYRF DLDDKKPQRE VNLHTDLLQR VEAYLTEYLS KSSNRIDRVP ANSVSRTSSI SSTDEWFSEQ PLPISATKIL WQRSLQLRDR
0201: QQYWQASVEG QRMLDSRTSL PAFKQRHSVL TAISQNQVIV ISGETGCGKT TQIPQFILES EIEANRGAFS SIICTQPRRI SAMSVSERVA YERGEQLGES
0301: VGYKVRLEGV KGRDTRLLFC TTGILLRRLL VDRNLRGVTH VIVDEIHERG MNEDFLLIIL KDLLSRRSEL KLILMSATLD AELFSSYFGG AGVIYIPGFT
0401: YPVRSHFLED ILEMTRYRLT PYNQIDDYGQ ERTWKMNKQI PKKRKSQITF VVEDALRAAD FKEFSPETRE SLSCWYPDCI GFNLIEFLLC NICENEGPGG
0501: ILIFLTGWDD ISSLKEKLQI HPIFGNPDLV MLLACHGSME TFEQRLIFEE PASGVRKIVL ATNIAETSIT INDVAFVIDC GKAKETSYDA LNNTPCLLPS
0601: WISKVSAQQR RGRAGRVRPG QCYHLYPKCV YDAFAEYQLP EILRTPLHSL CLQIKSLNLG SISEFLSRAL QSPELLAVQK AIAFLKIIGA LDENEDLTTL
0701: GRYLSKLPME PKLGKMLILG AILGCLDPIL TVAAGLSVRD PFLTPQDKKD LAEAAKSQFS RDHSDHLALV RAYEGWKKAE EESAVYDYCW KNFLSIQSLR
0801: AIDSLRKEFF SLLKDTGLID GNPSICNSEG NDANLTRAVI CYGMYPGICS VVHNERSFSL KTMEDGQVLL YSNSENARET KIPYPWLVFN EKIKVNSVFL
0901: RDSTACSDST LILFGGSISK GDTDGHLKML GGYLEFFMKP DVAEIYQTLK KELDELIQNK LLNPKVDMQA HRELLSAIRL LVSEDGCDGR FVFGHQILRP
1001: LEISALSTKP SLFSRTESGP GGDNSKSQLQ TILTRAGYTV PMYKTKQLKN NKFQTTVEFN ETQIMGQPCS NKKSAEKDAA AEAIQWLKGG AKESHEQVNH
1101: MSKLLKKGKK DHL

Arabidopsis Description

DExH-box ATP-dependent RNA helicase DExH5, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:F4IM84]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.