Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX78376 | Canola | plastid | 98.86 | 98.75 |
| Bra009038.1-P | Field mustard | plastid | 82.05 | 81.49 |
| AT5G10370.1 | Thale cress | nucleus | 81.2 | 80.28 |
| AT4G01020.1 | Thale cress | nucleus | 80.34 | 78.9 |
| KRG97543 | Soybean | nucleus, plastid | 55.56 | 56.39 |
| KRH31333 | Soybean | nucleus, plastid | 54.7 | 55.3 |
| PGSC0003DMT400041805 | Potato | nucleus | 50.6 | 54.75 |
| GSMUA_Achr8P17640_001 | Banana | nucleus | 37.78 | 53.81 |
| Solyc04g014210.2.1 | Tomato | nucleus | 52.14 | 52.89 |
| Solyc11g010310.1.1 | Tomato | nucleus | 51.28 | 52.79 |
| PGSC0003DMT400060759 | Potato | nucleus | 51.85 | 52.63 |
| VIT_07s0191g00210.t01 | Wine grape | nucleus | 49.34 | 49.86 |
| OQU90279 | Sorghum | nucleus | 42.34 | 48.98 |
| TraesCS5B01G080500.1 | Wheat | nucleus | 36.7 | 48.68 |
| Os07t0621500-01 | Rice | cytosol, nucleus | 35.38 | 48.25 |
| TraesCS5A01G074100.1 | Wheat | nucleus | 44.62 | 46.61 |
| TraesCS2D01G171200.2 | Wheat | nucleus | 46.32 | 46.56 |
| TraesCS5D01G087800.2 | Wheat | nucleus | 44.39 | 46.51 |
| TraesCS2B01G190100.1 | Wheat | nucleus | 45.87 | 46.42 |
| Zm00001d022176_P002 | Maize | nucleus | 45.7 | 45.78 |
| TraesCS3D01G112900.1 | Wheat | nucleus | 34.59 | 45.4 |
| TraesCS3B01G129700.1 | Wheat | nucleus | 41.71 | 45.02 |
| HORVU5Hr1G019730.1 | Barley | nucleus, plastid | 43.7 | 44.91 |
| TraesCS3A01G111000.1 | Wheat | nucleus | 44.73 | 44.75 |
| TraesCS2A01G164100.1 | Wheat | nucleus | 46.15 | 44.73 |
| HORVU2Hr1G030040.17 | Barley | nucleus | 45.41 | 43.67 |
| Bra001238.1-P | Field mustard | cytosol, mitochondrion | 5.19 | 34.47 |
| Bra040328.1-P | Field mustard | cytosol, mitochondrion | 4.16 | 34.11 |
| Bra001237.1-P | Field mustard | cytosol | 8.21 | 33.33 |
| Bra003744.1-P | Field mustard | nucleus | 12.42 | 32.54 |
| Bra011023.1-P | Field mustard | nucleus | 12.76 | 32.51 |
| Bra010915.1-P | Field mustard | nucleus | 12.76 | 31.77 |
| Bra013313.1-P | Field mustard | nucleus | 12.54 | 31.56 |
| Bra007671.1-P | Field mustard | nucleus | 12.76 | 31.2 |
| Bra024720.1-P | Field mustard | nucleus | 12.76 | 30.43 |
| Bra000445.1-P | Field mustard | cytosol | 12.48 | 30.29 |
| Bra038498.1-P | Field mustard | nucleus | 13.79 | 26.86 |
| Bra010168.1-P | Field mustard | nucleus | 14.3 | 24.04 |
| Bra024903.1-P | Field mustard | nucleus | 14.53 | 22.47 |
| Bra025211.1-P | Field mustard | nucleus | 14.93 | 22.37 |
| Bra023043.1-P | Field mustard | nucleus | 12.65 | 22.31 |
| Bra009414.1-P | Field mustard | mitochondrion | 14.36 | 21.82 |
| Bra018747.1-P | Field mustard | plastid | 14.47 | 21.53 |
| Bra040091.1-P | Field mustard | nucleus | 8.83 | 19.6 |
| Bra023387.1-P | Field mustard | nucleus | 13.9 | 19.55 |
| Bra032998.1-P | Field mustard | nucleus | 12.76 | 18.11 |
| Bra021665.1-P | Field mustard | nucleus | 12.59 | 16.93 |
| Bra018293.1-P | Field mustard | plasma membrane, vacuole | 12.31 | 16.36 |
| Bra027890.1-P | Field mustard | nucleus | 11.23 | 14.81 |
Protein Annotations
| Gene3D:1.10.10.2130 | Gene3D:1.20.120.1750 | MapMan:19.2.2.1.5.4.3 | Gene3D:3.30.40.10 | Gene3D:3.40.50.300 | EnsemblPlantsGene:Bra006057 |
| EnsemblPlants:Bra006057.1 | EnsemblPlants:Bra006057.1-P | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | InterPro:DNA/RNA_helicase_DEAH_CS | InterPro:DUF1605 |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004386 | GO:GO:0005488 |
| GO:GO:0005524 | GO:GO:0016787 | GO:GO:0046872 | InterPro:Helicase-assoc_dom | InterPro:Helicase_ATP-bd | InterPro:Helicase_C |
| InterPro:IBR_dom | InterPro:IPR001650 | InterPro:IPR013083 | InterPro:IPR013087 | InterPro:IPR014001 | UniProt:M4CPB9 |
| InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFAM:PF01485 | PFAM:PF04408 | PFAM:PF07717 |
| ScanProsite:PS00028 | ScanProsite:PS00518 | ScanProsite:PS00690 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR18934 |
| PANTHER:PTHR18934:SF81 | SMART:SM00487 | SMART:SM00490 | SMART:SM00647 | SMART:SM00847 | SUPFAM:SSF52540 |
| SUPFAM:SSF57850 | UniParc:UPI000058E008 | InterPro:Znf_C2H2_type | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS | SEG:seg |
Description
AT5G10370 (E=0.0) | helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related
Coordinates
chrA03:+:1788666..1794501
Molecular Weight (calculated)
197521.0 Da
IEP (calculated)
7.163
GRAVY (calculated)
-0.227
Length
1755 amino acids
Sequence
(BLAST)
(BLAST)
0001: MKSSLPPAYR GRSATNRHPS LPSASTNCRN FRSPPLNHRQ YPSSSFPPNY RRDRPPATPN FIVQLVHPRT PAAEPSPSFS VRKQVISTLA SLCGIPEESV
0101: HVPQFGCIAG SFSFRQWVDA LSAVVALWEY RLQGKTLLVP ELVANVTVPS DMEELRDRLR GLFSGHVLSI LDNGDCVKKV RAEIEEKTRQ VESFSSKRGI
0201: KLEAFERKKA IEAERDLVVK RLEEFKNGMK SIVRFLEGRD GEKDDVAVFS LEGDYDWPRI HSLIRRECRR LEDGLPIYAY RRNILKRIHG EQVMVLIGET
0301: GSGKSTQLVQ FLADSGVAAT ESIVCTQPRK IAALTLADRV REESNGCYEE NSVRCTPAFS STEEISSKVV FMTDNCLLQH YIKDRSLPGV SCVIIDEAHE
0401: RSLNTDLLLA LLKDLMCRRI DLRLVIMSAT ADAYQLSDYF FGCGILCVTG RNFPVEIIYS PSDAEGSSGT GRIAPYADDV VKKAVEVHKT EKEGTILAFL
0501: TSQAEVEWAC ERFIAPSAVA LPLHGKLSFE EQFRVFQNHP GKRKVIFATN IAETSLTIPG VKYVIDSGMV KESKYEPRTG MSILRVCRVS QSSARQRAGR
0601: AGRTEPGRCY RLYSKHEFES MNLNQEPEIR RVHLGVALLR ILALGVDSVA DFDFVDAPVP EAIAMAVKNL VQLGAVVEKN GVLELTQEGH CLVKLGLEPK
0701: LGKLILGCFR HRMGKEGIVL AAVMANASSI FCRVGSLDDK MKADCLKVQF CNPNGDLFTL LSVYKEWASL PRERRNKWCW ENSLNAKSMR RCEDTVKELE
0801: ICIERELSLV SPSYWVWNPT EGNNNKHDKR LKTVILASLA ENVAMYTGYD QLGYEVALTG QQVQLHPSCS LLAFGQKPTW VVFGELLSIV DQYLVCVTSF
0901: DFEALSLLDP PPPFDASHMD EWRLRVEKVA GCSSTLLKRF CGKSNCGLLS IVSRARLLCV DERISIQVDV DQNEILLYAP PHDMDKVSAL VSDALECEKK
1001: WMRNECLEKY IYHGRGQVPM ALFGSGAQIK HLEVDQRFLT ADVFYYGDSF VDDRELLRFL ERKIDVCICS IHKFAGNKQD CDEKDKWGRI TFLTPESAMK
1101: ATEIQRFDFN GSVLKLFPSL ATGGGGMFKM PSFPSVTAMI RWPQRESTGR GVLKCPSGDV HSVFNGTSDI VIGTRYARFE TDQRFSDSVL ITNIDSGLVE
1201: ADVLDALEFY TGRTDLEFFL LRRKSVRSPP PTVCADMLHK RIFACMSSSS PEPNCVQVKV FEPKETDYFM RALITFDGRL HLEAAKALEE LDGEVLPGCL
1301: SWQKIKCEQK FQSSIICPAS VYNIVKRQLN AKLTSFERQR GGTWHLEPTH GGAYRVRISA YATKPISEMR RSLEELVRGR PINHPGLTPR VLQHLSSRDG
1401: VILMRRIQHE TETYILLDRH SLTVRICGSE EKIAAAEQEL VRSLLVYHER QQLEIRLRGP QLRPDLMKEV VNRFGPDLQG IKEKVNGVDL KLNTRYHVIQ
1501: VHGSVEMRQE VEKIVYELAR EGSEPGGKPD DIEVECPICL CEVDDGYSLE GCSHLFCKAC LLEQLEASMR NFDAFPILCS HTDCGAPIVL ADMRALLSQE
1601: KLDELFKASL SSFVTTSDGN FRFCSTPDCP SVYRVAVGPR ESGEPFICGA CNAETCRRCH LEYHPYITCE RYKLFKEDPD MSLKDWAKGK NVKECPFCKS
1701: TIEKSDGCNH LLCRCGKHIC WVCLDFFTHQ EPCYEHLRAV HGGIGIFDEL GIPLL
0101: HVPQFGCIAG SFSFRQWVDA LSAVVALWEY RLQGKTLLVP ELVANVTVPS DMEELRDRLR GLFSGHVLSI LDNGDCVKKV RAEIEEKTRQ VESFSSKRGI
0201: KLEAFERKKA IEAERDLVVK RLEEFKNGMK SIVRFLEGRD GEKDDVAVFS LEGDYDWPRI HSLIRRECRR LEDGLPIYAY RRNILKRIHG EQVMVLIGET
0301: GSGKSTQLVQ FLADSGVAAT ESIVCTQPRK IAALTLADRV REESNGCYEE NSVRCTPAFS STEEISSKVV FMTDNCLLQH YIKDRSLPGV SCVIIDEAHE
0401: RSLNTDLLLA LLKDLMCRRI DLRLVIMSAT ADAYQLSDYF FGCGILCVTG RNFPVEIIYS PSDAEGSSGT GRIAPYADDV VKKAVEVHKT EKEGTILAFL
0501: TSQAEVEWAC ERFIAPSAVA LPLHGKLSFE EQFRVFQNHP GKRKVIFATN IAETSLTIPG VKYVIDSGMV KESKYEPRTG MSILRVCRVS QSSARQRAGR
0601: AGRTEPGRCY RLYSKHEFES MNLNQEPEIR RVHLGVALLR ILALGVDSVA DFDFVDAPVP EAIAMAVKNL VQLGAVVEKN GVLELTQEGH CLVKLGLEPK
0701: LGKLILGCFR HRMGKEGIVL AAVMANASSI FCRVGSLDDK MKADCLKVQF CNPNGDLFTL LSVYKEWASL PRERRNKWCW ENSLNAKSMR RCEDTVKELE
0801: ICIERELSLV SPSYWVWNPT EGNNNKHDKR LKTVILASLA ENVAMYTGYD QLGYEVALTG QQVQLHPSCS LLAFGQKPTW VVFGELLSIV DQYLVCVTSF
0901: DFEALSLLDP PPPFDASHMD EWRLRVEKVA GCSSTLLKRF CGKSNCGLLS IVSRARLLCV DERISIQVDV DQNEILLYAP PHDMDKVSAL VSDALECEKK
1001: WMRNECLEKY IYHGRGQVPM ALFGSGAQIK HLEVDQRFLT ADVFYYGDSF VDDRELLRFL ERKIDVCICS IHKFAGNKQD CDEKDKWGRI TFLTPESAMK
1101: ATEIQRFDFN GSVLKLFPSL ATGGGGMFKM PSFPSVTAMI RWPQRESTGR GVLKCPSGDV HSVFNGTSDI VIGTRYARFE TDQRFSDSVL ITNIDSGLVE
1201: ADVLDALEFY TGRTDLEFFL LRRKSVRSPP PTVCADMLHK RIFACMSSSS PEPNCVQVKV FEPKETDYFM RALITFDGRL HLEAAKALEE LDGEVLPGCL
1301: SWQKIKCEQK FQSSIICPAS VYNIVKRQLN AKLTSFERQR GGTWHLEPTH GGAYRVRISA YATKPISEMR RSLEELVRGR PINHPGLTPR VLQHLSSRDG
1401: VILMRRIQHE TETYILLDRH SLTVRICGSE EKIAAAEQEL VRSLLVYHER QQLEIRLRGP QLRPDLMKEV VNRFGPDLQG IKEKVNGVDL KLNTRYHVIQ
1501: VHGSVEMRQE VEKIVYELAR EGSEPGGKPD DIEVECPICL CEVDDGYSLE GCSHLFCKAC LLEQLEASMR NFDAFPILCS HTDCGAPIVL ADMRALLSQE
1601: KLDELFKASL SSFVTTSDGN FRFCSTPDCP SVYRVAVGPR ESGEPFICGA CNAETCRRCH LEYHPYITCE RYKLFKEDPD MSLKDWAKGK NVKECPFCKS
1701: TIEKSDGCNH LLCRCGKHIC WVCLDFFTHQ EPCYEHLRAV HGGIGIFDEL GIPLL
0001: MRNSFPPSDG GRSATDRRQQ SSHSSSTNRY NSRSAQSSPP LNHRPTWNQQ HSQYPNSNFP PNYRRDRNPS SGYSPPVTRA RPNFIVQLLH PAAANSDTKL
0101: CFSTKKQEIE SLALLCEIPE ESIHVPQFGC IAGSFSFRQW VDARSAVVAL WDYRLQGKHE FVPELIPNVI VPSDMNELKD RLRDLFSSHI LSLMENGEGV
0201: KKVRLEIEEK SRQVVSFSSK RGLKFEVFEK KKAIEAERDL VVNRLEEFNN AMKSILRYLI GQDGYEFDLD DEEEGDVAVF CLEGAYDWRR IHCLIRRECR
0301: RLEDGLPIYA YRRQILKKIH REQIMVLIGE TGSGKSTQLV QFLADSGVAA SESIVCTQPR KIAAMTLADR VREESSGCYE ENTVSCTPTF SSTEEISSKV
0401: VYMTDNCLLQ HYMKDRSLSG ISCVIIDEAH ERSLNTDLLL ALLKKLLSRR IDLRLVIMSA TADAKQLSQY FFSCGILLVN GRNFPVEIVY SPSDTEENSV
0501: VGGIASYVGD VVKMAVEIHK TEKEGTILAF LTSQAEVEWA CERFITPSAI ALPLHGKLSF EEQFRVFQNH PGRRKVIFAT NIAETSLTIP GVKYVIDSGM
0601: VKESKYEPRT GMSILKVCRV SQSSARQRAG RAGRTEPGRC YRLYSKNDFD SMNLNQEPEI RRVHLGVALL RMLALGVNNI AEFNFVDAPV PEAIAMAVQN
0701: LVQLGAVVEK NGVHELTQEG HCLVKLGLEP KLGKLILGCF RHRMGKEGIV LAAVMANASS IFCRVGNFDD KMKADRLKVQ FCNQNGDLFT LLSVYKEWAS
0801: LPRERRNKWC WENSLNAKSM RRCEDTVKEL EICIERELTL VSPSYWVWNP NEGTKHDKHL KMVILASLAE NVAMYTGYNQ LGYEVALTGQ QVQLHPSCSL
0901: LAFGQKPSWV VFGELLSIVD QYLVCVTACD FEALYMLDPP PPFDVSQMDE RRLRIKKVVG CSSTVLKRFC GKSNRSLLSI VSRARSLCSD ERIGIQVDVD
1001: QNEIRLYAPP LDMEKVSALV NDALECEKKW MHNECLEKYL YHGRGQVPIA LFGSGAQIKH LEVDQRFLTV DVLYYGDDVV DDRELLTFLE KKIDGSICSI
1101: YKFAANKQDC DEKEKWGRIT FLTPESAMKA TEIQKFYFKG SVLKLFPSLS TGGGIFKMPY FSSVTAKIRW PRRESSGRGC LKCPSGDIHR ILGDISSLEI
1201: GTNYVHIQRD QQSNDSILIS GLGDLSEAEV LDVLEFRTQR RDLNFFIFRK KYSVQCPSPT ACEEELHKRI FARMSAKNPE PNCVQVQVFE PKEDNYFMRA
1301: LIKFDGRLHF EAAKALQELN GEVLPGCLPW QKIKCEQLFQ SSIICSASIY NTVKRQLNVL LARFERQKGG ECCLEPTHNG AYRVKITAYA TRPVAEMRRE
1401: LEELLRGRPI NHPGFTRRVL QHLMSRDGIN LMRKIQQETE TYILLDRHNL TVRICGTSEK IAKAEQELIQ ALMDYHESKQ LEIHLRGPEI RPDLMKEVVK
1501: RFGPELQGIK EKVHGVDLKL NTRYHVIQVH GSKEMRQEVQ KMVNELAREK SALGEKPDEI EVECPICLSE VDDGYSLEGC SHLFCKACLL EQFEASMRNF
1601: DAFPILCSHI DCGAPIVLAD MRALLSQEKL DELFSASLSS FVTSSDGKFR FCSTPDCPSV YRVAGPQESG EPFICGACHS EICTRCHLEY HPLITCERYK
1701: KFKENPDLSL KDWAKGKNVK ECPICKSTIE KTDGCNHMKC RCGKHICWTC LDVFTQEEPC YAHLRTIHGG IGLVE
0101: CFSTKKQEIE SLALLCEIPE ESIHVPQFGC IAGSFSFRQW VDARSAVVAL WDYRLQGKHE FVPELIPNVI VPSDMNELKD RLRDLFSSHI LSLMENGEGV
0201: KKVRLEIEEK SRQVVSFSSK RGLKFEVFEK KKAIEAERDL VVNRLEEFNN AMKSILRYLI GQDGYEFDLD DEEEGDVAVF CLEGAYDWRR IHCLIRRECR
0301: RLEDGLPIYA YRRQILKKIH REQIMVLIGE TGSGKSTQLV QFLADSGVAA SESIVCTQPR KIAAMTLADR VREESSGCYE ENTVSCTPTF SSTEEISSKV
0401: VYMTDNCLLQ HYMKDRSLSG ISCVIIDEAH ERSLNTDLLL ALLKKLLSRR IDLRLVIMSA TADAKQLSQY FFSCGILLVN GRNFPVEIVY SPSDTEENSV
0501: VGGIASYVGD VVKMAVEIHK TEKEGTILAF LTSQAEVEWA CERFITPSAI ALPLHGKLSF EEQFRVFQNH PGRRKVIFAT NIAETSLTIP GVKYVIDSGM
0601: VKESKYEPRT GMSILKVCRV SQSSARQRAG RAGRTEPGRC YRLYSKNDFD SMNLNQEPEI RRVHLGVALL RMLALGVNNI AEFNFVDAPV PEAIAMAVQN
0701: LVQLGAVVEK NGVHELTQEG HCLVKLGLEP KLGKLILGCF RHRMGKEGIV LAAVMANASS IFCRVGNFDD KMKADRLKVQ FCNQNGDLFT LLSVYKEWAS
0801: LPRERRNKWC WENSLNAKSM RRCEDTVKEL EICIERELTL VSPSYWVWNP NEGTKHDKHL KMVILASLAE NVAMYTGYNQ LGYEVALTGQ QVQLHPSCSL
0901: LAFGQKPSWV VFGELLSIVD QYLVCVTACD FEALYMLDPP PPFDVSQMDE RRLRIKKVVG CSSTVLKRFC GKSNRSLLSI VSRARSLCSD ERIGIQVDVD
1001: QNEIRLYAPP LDMEKVSALV NDALECEKKW MHNECLEKYL YHGRGQVPIA LFGSGAQIKH LEVDQRFLTV DVLYYGDDVV DDRELLTFLE KKIDGSICSI
1101: YKFAANKQDC DEKEKWGRIT FLTPESAMKA TEIQKFYFKG SVLKLFPSLS TGGGIFKMPY FSSVTAKIRW PRRESSGRGC LKCPSGDIHR ILGDISSLEI
1201: GTNYVHIQRD QQSNDSILIS GLGDLSEAEV LDVLEFRTQR RDLNFFIFRK KYSVQCPSPT ACEEELHKRI FARMSAKNPE PNCVQVQVFE PKEDNYFMRA
1301: LIKFDGRLHF EAAKALQELN GEVLPGCLPW QKIKCEQLFQ SSIICSASIY NTVKRQLNVL LARFERQKGG ECCLEPTHNG AYRVKITAYA TRPVAEMRRE
1401: LEELLRGRPI NHPGFTRRVL QHLMSRDGIN LMRKIQQETE TYILLDRHNL TVRICGTSEK IAKAEQELIQ ALMDYHESKQ LEIHLRGPEI RPDLMKEVVK
1501: RFGPELQGIK EKVHGVDLKL NTRYHVIQVH GSKEMRQEVQ KMVNELAREK SALGEKPDEI EVECPICLSE VDDGYSLEGC SHLFCKACLL EQFEASMRNF
1601: DAFPILCSHI DCGAPIVLAD MRALLSQEKL DELFSASLSS FVTSSDGKFR FCSTPDCPSV YRVAGPQESG EPFICGACHS EICTRCHLEY HPLITCERYK
1701: KFKENPDLSL KDWAKGKNVK ECPICKSTIE KTDGCNHMKC RCGKHICWTC LDVFTQEEPC YAHLRTIHGG IGLVE
Arabidopsis Description
ATP-dependent RNA helicase DEAH12, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4KGU4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.