Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G074100.1 | Wheat | nucleus | 98.09 | 97.8 |
| TraesCS5B01G080500.1 | Wheat | nucleus | 76.54 | 96.9 |
| HORVU5Hr1G019730.1 | Barley | nucleus, plastid | 93.43 | 91.63 |
| TraesCS2D01G171200.2 | Wheat | nucleus | 84.18 | 80.76 |
| TraesCS3D01G112900.1 | Wheat | nucleus | 61.91 | 77.56 |
| Os07t0621500-01 | Rice | cytosol, nucleus | 58.33 | 75.91 |
| OQU90279 | Sorghum | nucleus | 65.37 | 72.18 |
| Zm00001d022176_P002 | Maize | nucleus | 71.76 | 68.61 |
| GSMUA_Achr8P17640_001 | Banana | nucleus | 43.04 | 58.52 |
| PGSC0003DMT400041805 | Potato | nucleus | 47.52 | 49.08 |
| KRG97543 | Soybean | nucleus, plastid | 50.45 | 48.87 |
| KRH31333 | Soybean | nucleus, plastid | 50.03 | 48.27 |
| Solyc04g014210.2.1 | Tomato | nucleus | 49.07 | 47.51 |
| Solyc11g010310.1.1 | Tomato | nucleus | 48.24 | 47.39 |
| PGSC0003DMT400060759 | Potato | nucleus | 48.6 | 47.08 |
| Bra006057.1-P | Field mustard | plastid | 46.51 | 44.39 |
| CDX81170 | Canola | plastid | 46.69 | 44.36 |
| AT5G10370.1 | Thale cress | nucleus | 46.99 | 44.34 |
| CDX78376 | Canola | plastid | 46.33 | 44.17 |
| AT4G01020.1 | Thale cress | nucleus | 46.99 | 44.04 |
| CDX96996 | Canola | nucleus | 45.85 | 43.41 |
| Bra009038.1-P | Field mustard | plastid | 45.55 | 43.18 |
| CDX69841 | Canola | plastid | 45.43 | 43.07 |
| VIT_07s0191g00210.t01 | Wine grape | nucleus | 44.24 | 42.66 |
| TraesCS3D01G148100.1 | Wheat | nucleus | 13.19 | 31.53 |
| TraesCS4D01G074200.1 | Wheat | nucleus | 12.96 | 30.78 |
| TraesCS4D01G181700.1 | Wheat | cytosol | 13.19 | 30.65 |
| TraesCS7D01G157100.1 | Wheat | plastid | 12.36 | 29.03 |
| TraesCS3D01G264900.1 | Wheat | plastid | 14.03 | 25.52 |
| TraesCS4D01G362600.1 | Wheat | nucleus | 14.57 | 23.33 |
| TraesCS7D01G341800.1 | Wheat | nucleus | 14.81 | 22.92 |
| TraesCS1D01G243400.1 | Wheat | nucleus | 14.39 | 22.71 |
| TraesCS5D01G397600.1 | Wheat | nucleus | 15.16 | 22.09 |
| TraesCS1D01G148100.2 | Wheat | nucleus | 13.07 | 21.28 |
| TraesCS4D01G147900.1 | Wheat | nucleus | 14.93 | 19.39 |
| TraesCS3D01G025600.1 | Wheat | mitochondrion, nucleus, plastid | 14.33 | 19.32 |
| TraesCS2D01G231900.1 | Wheat | nucleus | 14.93 | 17.82 |
| TraesCS6D01G279300.1 | Wheat | nucleus | 13.13 | 16.59 |
| TraesCS3D01G302800.2 | Wheat | plastid | 12.42 | 16.33 |
| TraesCS2D01G302700.1 | Wheat | plastid | 13.31 | 15.61 |
Protein Annotations
| Gene3D:1.10.10.2130 | Gene3D:1.20.120.1750 | MapMan:19.2.2.1.5.4.3 | Gene3D:3.30.40.10 | Gene3D:3.40.50.300 | ncoils:Coil |
| InterPro:DNA/RNA_helicase_DEAH_CS | InterPro:DUF1605 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004386 |
| GO:GO:0005488 | GO:GO:0016787 | InterPro:Helicase-assoc_dom | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IBR_dom |
| InterPro:IPR001650 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:IPR014001 | InterPro:P-loop_NTPase | PFAM:PF00271 |
| PFAM:PF01485 | PFAM:PF04408 | PFAM:PF07717 | ScanProsite:PS00518 | ScanProsite:PS00690 | PFscan:PS50089 |
| PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR18934 | PANTHER:PTHR18934:SF81 | InterPro:RBD_domain_sf | SMART:SM00184 |
| SMART:SM00487 | SMART:SM00490 | SMART:SM00647 | SMART:SM00847 | SUPFAM:SSF52540 | SUPFAM:SSF54928 |
| SUPFAM:SSF57850 | EnsemblPlantsGene:TraesCS5D01G087800 | EnsemblPlants:TraesCS5D01G087800.2 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS |
| TIGR:cd00046 | TIGR:cd00079 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr5D:+:93798045..93806015
Molecular Weight (calculated)
187669.0 Da
IEP (calculated)
7.502
GRAVY (calculated)
-0.223
Length
1675 amino acids
Sequence
(BLAST)
(BLAST)
0001: MARSHADRPF RPPDRGPLPP HRSQQHRQPH PQSAAILLLR AGPDFSSPPA TEVDALVAGL RPDSLSVFSS GRHAARLLFR SLPAAAAAAR DLWSLRLEGR
0101: HLLTPYLPDA ALAAKAFPLI SSLFASHASR LLDSDLVSRL AARSSQLAAS VQSVKHRLRV RRSNLRDFDQ LNLQRKTLEA DKDLLDAKIA EYKAAMMSIR
0201: RAMLSGTDEE EEGVDLFGIV EGDDVDFARV HTMMLRECRR LNEGLPIYAY RRKILNHIFA NQVMILIGET GSGKSTQLVQ YLADSGLAAN GSIVCTQPRK
0301: IAAITLARRV DEESNGCYAD NFVSSCSTFS GSRGFSSEII FGTDSYLLHH CMNDTGLDGV SYIIVDEAHE RSLNTDLLLA LIKKELLDRV DLRLIIMSAT
0401: ADANRLAEYF YGCQTFHVKG RNFPVEIKYI PDVSVDASFN TVPNSLNDAC ATASYVNDVV RVVSVIHKNE EEGAILAFLT SQLEVEWACE NFSDASAVVL
0501: PMHGKLSHVE QSRVFNSYPG KRKVIFCTNM AETSLTIKEV KYVVDPGLAK ESRFVPSSGL NVLKVNWISQ SSANQRAGRA GRTGAGKCYR LYSESHFRMM
0601: EVHQEPEIRK VHLGTAVLRI LALGVRDAQN FEFVDAPNPE AINMALKNLE QLGAVKCKCN LFELTDTGRY LVKLGIEPRL GKIMLDCFDS GLRKEGVILA
0701: AVMANSSSIF CRVGTNEEKH KADLQKVRLC HQDGDLFTLL AVYKKWEDGN GNRNMWCWQN SINAKTMRKC QETISELENC LKHELNIIVP SYWCWNPEVP
0801: SMHDKLLKRI ILSSLTGNLA MFLGHEKFGY QVISTDQAVN LHPSCSLLNY GSKPEWVVFT EILSIPNQYL VCVTAVDHDA LYSVHSMSFI HQLEKHKLQI
0901: KVISGLGHNL LRRFCGKYGQ NQHRIISHLK EECRDDRITV EINFKNNEVV LFATRQDIEK VFCIVNGALE CEAKMLRNEC LERRLFPGRP GSSPLALFGS
1001: GAEIKHLELG KRYLTVEVLH QNAHDINDKE LIFLVGSLIP GVANFHKSAG NFRIASDETK WGKLTFLKPE DAEEAVLKLN GIEFHGSSLK VVPVCSSDNR
1101: GLPFPAVRAR LSWPCNPSRG RAFGTRLLRP REAPIIGPSV SACEEALIRE ISSFMPNKSF PGQNFRVEVF PPEENNSMMR ATITFDGSLH REAARALDHL
1201: EGSFLPCCQP WQMIRCKHVF HSTLSCPLHV YNVISQEVNS LLESFRSQKG VSYNFEKTDN GIFRLKLTAN ATKTIADLRR PLEILMKGNT INHPDLTISA
1301: VQLLMSHDGV VHLKSIEQET GTYILYDRQS LNIKVFGHQD QMATAETKLV HALTELLEKK PLEISLRGHN LPPDLMKKTV ENFGVDLEGL KKEMPAVNVE
1401: LHKQRHLLKV WGSKEDKRRV EGMISELITS VKQNALVQLP SGSVGGSKDK QRVDDNELAQ DACPICLCET EDPFELESCG HMFCWACLVD QCESAMKSHD
1501: GFPVCCLKTG CKKPFLIVDL KHLVSNEKLE DLFRASLRTF VESRAGMYRF CPTPDCQSIY QVAAPDAETK PFVCGACYVE ICTKCHLEYH PFMSCEAYKQ
1601: YKEDPDATLL EWRRGKENVK NCPSCGYTIE KSEGCNHVEC RCGSHICWAC LANFRSSEEC YGHLRSAHQS FVDIV
0101: HLLTPYLPDA ALAAKAFPLI SSLFASHASR LLDSDLVSRL AARSSQLAAS VQSVKHRLRV RRSNLRDFDQ LNLQRKTLEA DKDLLDAKIA EYKAAMMSIR
0201: RAMLSGTDEE EEGVDLFGIV EGDDVDFARV HTMMLRECRR LNEGLPIYAY RRKILNHIFA NQVMILIGET GSGKSTQLVQ YLADSGLAAN GSIVCTQPRK
0301: IAAITLARRV DEESNGCYAD NFVSSCSTFS GSRGFSSEII FGTDSYLLHH CMNDTGLDGV SYIIVDEAHE RSLNTDLLLA LIKKELLDRV DLRLIIMSAT
0401: ADANRLAEYF YGCQTFHVKG RNFPVEIKYI PDVSVDASFN TVPNSLNDAC ATASYVNDVV RVVSVIHKNE EEGAILAFLT SQLEVEWACE NFSDASAVVL
0501: PMHGKLSHVE QSRVFNSYPG KRKVIFCTNM AETSLTIKEV KYVVDPGLAK ESRFVPSSGL NVLKVNWISQ SSANQRAGRA GRTGAGKCYR LYSESHFRMM
0601: EVHQEPEIRK VHLGTAVLRI LALGVRDAQN FEFVDAPNPE AINMALKNLE QLGAVKCKCN LFELTDTGRY LVKLGIEPRL GKIMLDCFDS GLRKEGVILA
0701: AVMANSSSIF CRVGTNEEKH KADLQKVRLC HQDGDLFTLL AVYKKWEDGN GNRNMWCWQN SINAKTMRKC QETISELENC LKHELNIIVP SYWCWNPEVP
0801: SMHDKLLKRI ILSSLTGNLA MFLGHEKFGY QVISTDQAVN LHPSCSLLNY GSKPEWVVFT EILSIPNQYL VCVTAVDHDA LYSVHSMSFI HQLEKHKLQI
0901: KVISGLGHNL LRRFCGKYGQ NQHRIISHLK EECRDDRITV EINFKNNEVV LFATRQDIEK VFCIVNGALE CEAKMLRNEC LERRLFPGRP GSSPLALFGS
1001: GAEIKHLELG KRYLTVEVLH QNAHDINDKE LIFLVGSLIP GVANFHKSAG NFRIASDETK WGKLTFLKPE DAEEAVLKLN GIEFHGSSLK VVPVCSSDNR
1101: GLPFPAVRAR LSWPCNPSRG RAFGTRLLRP REAPIIGPSV SACEEALIRE ISSFMPNKSF PGQNFRVEVF PPEENNSMMR ATITFDGSLH REAARALDHL
1201: EGSFLPCCQP WQMIRCKHVF HSTLSCPLHV YNVISQEVNS LLESFRSQKG VSYNFEKTDN GIFRLKLTAN ATKTIADLRR PLEILMKGNT INHPDLTISA
1301: VQLLMSHDGV VHLKSIEQET GTYILYDRQS LNIKVFGHQD QMATAETKLV HALTELLEKK PLEISLRGHN LPPDLMKKTV ENFGVDLEGL KKEMPAVNVE
1401: LHKQRHLLKV WGSKEDKRRV EGMISELITS VKQNALVQLP SGSVGGSKDK QRVDDNELAQ DACPICLCET EDPFELESCG HMFCWACLVD QCESAMKSHD
1501: GFPVCCLKTG CKKPFLIVDL KHLVSNEKLE DLFRASLRTF VESRAGMYRF CPTPDCQSIY QVAAPDAETK PFVCGACYVE ICTKCHLEYH PFMSCEAYKQ
1601: YKEDPDATLL EWRRGKENVK NCPSCGYTIE KSEGCNHVEC RCGSHICWAC LANFRSSEEC YGHLRSAHQS FVDIV
001: MQVVIVREDK RNVRRKVSED EDDGTESEEE RLRDQREREE LEQHLRERDT ARTRKLTEPK MSKKEQEEFV RRDSAVDKGD IESLRKFSWQ EYMKKRKQKK
101: VLELKDDIED EPYLFGDEKL TEREIREFRY KREIYELIKK STQEEDNVGE YRMPDAYDQQ GSVDQEKRFA VSVQRYRDMG SAEKMNPFAE QEAWEDHQIE
201: NAALKFGAKN KEVSDNYEFV FEDQIDFIKA SVLAGDNYED EMHAKPSQDS AGKSAFHMLQ EDRKALPIYT YRDQLLNAVK DHQVLIIVGE TGSGKTTQIP
301: QYLHEAGYTK LGKVGCTQPR RVAAMSVAAR VAQEMGGKLG HEVGYSIRFE DCTSEKTILK YMTDGMLLRE LLGEPDLGSY SVIIVDEAHE RTLRTDILFG
401: LVKDIARARP DLKLLISSAT MDAEKFSDFF DQAPIFRFPG RRYPVDICFT TAPEADYMDA AITTVLTIHV KEPLGDVLVF LPGQEEIEAV EENLKHKIRG
501: LGTKIRELII CPIYANLPSE LQAKIFEPTP EGARKVVLAT NIAETSLTID GIKYVVDPGF SKMKSYNPRT GMESLLVTPI SKASATQRTG RAGRTSPGKC
601: YRLYTAFNYY NDLEDNTVPE IQRTNLASVV LSLKSLGIHN LLNFDFMDPP PSEALIKSLE LLFALGALNQ LGELTKAGRR MAEFPLDPML SKMIVVSDKY
701: KCSDEIISIA AMLSIGPSIF YRPKDKQVHA DNAMKNFHVG NVGDHIAFLK IYNSWKETNY STQWCYENYI QVRSMKRARD IRDQLEGLLE RVEIDVSSNA
801: NELDSIRKSI VAGFFPHTAK LQKNGSYRTV KHPQTVHIHP ASGLSQVLPR WVVYHQLVLT SKEYMRQVTE LKPEWLIEIA PHYYQLKDVE DATSKKMPKT
901: SGRAVV
101: VLELKDDIED EPYLFGDEKL TEREIREFRY KREIYELIKK STQEEDNVGE YRMPDAYDQQ GSVDQEKRFA VSVQRYRDMG SAEKMNPFAE QEAWEDHQIE
201: NAALKFGAKN KEVSDNYEFV FEDQIDFIKA SVLAGDNYED EMHAKPSQDS AGKSAFHMLQ EDRKALPIYT YRDQLLNAVK DHQVLIIVGE TGSGKTTQIP
301: QYLHEAGYTK LGKVGCTQPR RVAAMSVAAR VAQEMGGKLG HEVGYSIRFE DCTSEKTILK YMTDGMLLRE LLGEPDLGSY SVIIVDEAHE RTLRTDILFG
401: LVKDIARARP DLKLLISSAT MDAEKFSDFF DQAPIFRFPG RRYPVDICFT TAPEADYMDA AITTVLTIHV KEPLGDVLVF LPGQEEIEAV EENLKHKIRG
501: LGTKIRELII CPIYANLPSE LQAKIFEPTP EGARKVVLAT NIAETSLTID GIKYVVDPGF SKMKSYNPRT GMESLLVTPI SKASATQRTG RAGRTSPGKC
601: YRLYTAFNYY NDLEDNTVPE IQRTNLASVV LSLKSLGIHN LLNFDFMDPP PSEALIKSLE LLFALGALNQ LGELTKAGRR MAEFPLDPML SKMIVVSDKY
701: KCSDEIISIA AMLSIGPSIF YRPKDKQVHA DNAMKNFHVG NVGDHIAFLK IYNSWKETNY STQWCYENYI QVRSMKRARD IRDQLEGLLE RVEIDVSSNA
801: NELDSIRKSI VAGFFPHTAK LQKNGSYRTV KHPQTVHIHP ASGLSQVLPR WVVYHQLVLT SKEYMRQVTE LKPEWLIEIA PHYYQLKDVE DATSKKMPKT
901: SGRAVV
Arabidopsis Description
MEE29Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH6 [Source:UniProtKB/Swiss-Prot;Acc:F4IJV4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.