Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G148500.1 | Wheat | nucleus | 94.88 | 99.11 |
| TraesCS4A01G158200.1 | Wheat | nucleus | 94.1 | 98.3 |
| Os02t0301500-01 | Rice | nucleus | 41.51 | 97.99 |
| HORVU0Hr1G007860.1 | Barley | nucleus | 93.17 | 96.7 |
| CDY51663 | Canola | nucleus | 4.58 | 93.65 |
| PGSC0003DMT400084916 | Potato | nucleus | 57.41 | 92.38 |
| CDX91491 | Canola | nucleus | 4.5 | 92.06 |
| CDY23338 | Canola | cytosol | 29.09 | 88.86 |
| Zm00001d015893_P001 | Maize | nucleus, plasma membrane | 84.72 | 88.35 |
| EER95349 | Sorghum | nucleus | 85.1 | 88.33 |
| GSMUA_Achr10P... | Banana | nucleus | 66.25 | 87.59 |
| VIT_08s0056g00470.t01 | Wine grape | nucleus | 75.64 | 82.98 |
| KRH05918 | Soybean | nucleus | 76.18 | 82.04 |
| KRH17401 | Soybean | nucleus | 76.42 | 81.88 |
| KRG97372 | Soybean | nucleus | 61.29 | 81.7 |
| Solyc07g039550.2.1 | Tomato | nucleus | 75.17 | 81.43 |
| Solyc01g110990.2.1 | Tomato | nucleus | 70.13 | 81.37 |
| CDX83624 | Canola | nucleus | 70.21 | 81.17 |
| CDY13640 | Canola | nucleus | 70.36 | 80.62 |
| AT3G26560.1 | Thale cress | nucleus | 73.0 | 80.57 |
| PGSC0003DMT400056692 | Potato | nucleus | 70.36 | 79.49 |
| Bra025211.1-P | Field mustard | nucleus | 71.45 | 78.65 |
| Bra040091.1-P | Field mustard | nucleus | 47.4 | 77.24 |
| TraesCS7D01G341800.1 | Wheat | nucleus | 62.22 | 74.12 |
| TraesCS4D01G181700.1 | Wheat | cytosol | 28.08 | 50.21 |
| TraesCS3D01G148100.1 | Wheat | nucleus | 25.52 | 46.93 |
| TraesCS7D01G157100.1 | Wheat | plastid | 24.9 | 45.02 |
| TraesCS4D01G362600.1 | Wheat | nucleus | 34.37 | 42.35 |
| TraesCS3D01G264900.1 | Wheat | plastid | 29.87 | 41.8 |
| TraesCS4D01G074200.1 | Wheat | nucleus | 22.5 | 41.13 |
| TraesCS1D01G243400.1 | Wheat | nucleus | 32.82 | 39.87 |
| TraesCS2D01G231900.1 | Wheat | nucleus | 32.74 | 30.08 |
| TraesCS1D01G148100.2 | Wheat | nucleus | 21.26 | 26.63 |
| TraesCS5D01G397600.1 | Wheat | nucleus | 20.33 | 22.78 |
| TraesCS3D01G025600.1 | Wheat | mitochondrion, nucleus, plastid | 20.48 | 21.26 |
| TraesCS6D01G279300.1 | Wheat | nucleus | 20.79 | 20.21 |
| TraesCS3D01G112900.1 | Wheat | nucleus | 18.7 | 18.03 |
| TraesCS3D01G302800.2 | Wheat | plastid | 17.3 | 17.5 |
| TraesCS2D01G302700.1 | Wheat | plastid | 18.62 | 16.8 |
| TraesCS5D01G087800.2 | Wheat | nucleus | 19.39 | 14.93 |
| TraesCS2D01G171200.2 | Wheat | nucleus | 19.01 | 14.03 |
Protein Annotations
| Gene3D:2.40.50.140 | Gene3D:3.40.50.300 | MapMan:35.1 | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | InterPro:DNA/RNA_helicase_DEAH_CS |
| InterPro:DUF1605 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004386 |
| GO:GO:0005488 | GO:GO:0005524 | GO:GO:0016787 | InterPro:Helicase-assoc_dom | InterPro:Helicase_ATP-bd | InterPro:Helicase_C |
| InterPro:IPR001650 | InterPro:IPR003029 | InterPro:IPR014001 | InterPro:NA-bd_OB-fold | InterPro:P-loop_NTPase | PFAM:PF00270 |
| PFAM:PF00271 | PFAM:PF00575 | PFAM:PF04408 | PFAM:PF07717 | ScanProsite:PS00690 | PFscan:PS50126 |
| PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR18934 | PANTHER:PTHR18934:SF120 | InterPro:S1_dom | InterPro:S1_domain |
| SMART:SM00316 | SMART:SM00487 | SMART:SM00490 | SMART:SM00847 | SUPFAM:SSF50249 | SUPFAM:SSF52540 |
| EnsemblPlantsGene:TraesCS4D01G147900 | EnsemblPlants:TraesCS4D01G147900.1 | TIGR:cd00046 | TIGR:cd00079 | TIGR:cd05684 | SEG:seg |
Description
No Description!
Coordinates
chr4D:+:143577587..143582060
Molecular Weight (calculated)
146272.0 Da
IEP (calculated)
7.590
GRAVY (calculated)
-0.614
Length
1289 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAAAAAEGPG DDGLRKLEYL SLVSKVCSEL ETHIGVGDKV LAEFITELGR DAPSVADFDA KLKANGADLP DYFVRTLLTI IHAILPPPSH NPSSAASQSN
0101: SKYRALSRPD DADRARELRL ELERDANAAA ATTPAPSRDR SRDDRSRDRD HDPKRDEPRG RDRDHDRSRD RDRGRGDRSH NRDRAHDDRG QDRNHDRGRE
0201: HDNGWDRDRD RRRDRVREGD RDGNGRRDQD RLQQRDRDTG KAHGRSRRYV DEEEGQQERA GRRKMENTMT NSSGEPELYQ VYRGRVTRVM DTGCFVKLED
0301: VRGGCEGLVH VSQMASRRVA NAKEVVKRDQ EVFVKVVSVK GDKLSLSLRD VDQDTGKDLL PMQRGVEDAP RTNPSVGSAA AAGPGRRLGL SGIVITEEDE
0401: VAPISRRPLK RMSSPERWEA KQLIASGVLD VRDYPQFDED GDGMLYQEEG AEEELEIELN EDEPEFLQGQ SRFSIDMSPV KIFKNPEGSL SRAAALQTAL
0501: IKERREVREQ EQRAMLDSIP KDLNRPWEDP MPDTGERHLA QELRGVGLSA YDMPEWKKEA YGKALTFGQR SKLSIQDQRQ TLPIYKLKKE LIQAVHDNQV
0601: LVVIGETGSG KTTQVTQYLA EAGYTTRGKI GCTQPRRVAA MSVAKRVAEE FGCRLGEEVG YAIRFEDCTG PETVIKYMTD GMLLREILVD ENLSQYSVVM
0701: LDEAHERTIH TDVLFGLLKQ LVKRRPDMRL IVTSATLDAE KFSGYFFNCN IFTIPGRTFP VEILYTKQPE SDYLDAALIT VLQIHLTEPE GDILVFLTGQ
0801: EEIDHACQCL YERMKGLGKD VPELIILPVY SALPSEMQSK IFEPAPPGKR KVVVATNIAE ASLTIDGIYY VIDPGFAKIN VYNSKQGLDS LVITPISQAS
0901: AKQRAGRAGR TGPGKCYRLY TESAYRNEMS PTTIPEIQRI NLGSTVLNMK AMGINDLLSF DFMDPPAPQA LISAMEQLYS LGALDEEGLL TKLGRKMAEF
1001: PLDPPLSKML LASVDLGCSD EILTIIAMIQ TGNIFYRPRE KQAQADQKRA KFFQPEGDHL TLLAVYEAWK AKNFSGPWCF ENFVQSRSLR RAQDVRKQLL
1101: TIMDRFAKKH CSVVYKNISQ WELVKMVVLF RRPIHGLFHC VFVIKCSDNL LSLHIQCWRY KLDVVAAGKN FTKIRKAITA GFFFHAARKD PQEGYRTLVE
1201: NQPVYIHPSS ALFQRQPDWV IYHELVMTTK EYMREVTVVD PKWLVELAPR FYKGADPTKM SKRKRQERIE PLYDRYHEPN SWRLSKRRA
0101: SKYRALSRPD DADRARELRL ELERDANAAA ATTPAPSRDR SRDDRSRDRD HDPKRDEPRG RDRDHDRSRD RDRGRGDRSH NRDRAHDDRG QDRNHDRGRE
0201: HDNGWDRDRD RRRDRVREGD RDGNGRRDQD RLQQRDRDTG KAHGRSRRYV DEEEGQQERA GRRKMENTMT NSSGEPELYQ VYRGRVTRVM DTGCFVKLED
0301: VRGGCEGLVH VSQMASRRVA NAKEVVKRDQ EVFVKVVSVK GDKLSLSLRD VDQDTGKDLL PMQRGVEDAP RTNPSVGSAA AAGPGRRLGL SGIVITEEDE
0401: VAPISRRPLK RMSSPERWEA KQLIASGVLD VRDYPQFDED GDGMLYQEEG AEEELEIELN EDEPEFLQGQ SRFSIDMSPV KIFKNPEGSL SRAAALQTAL
0501: IKERREVREQ EQRAMLDSIP KDLNRPWEDP MPDTGERHLA QELRGVGLSA YDMPEWKKEA YGKALTFGQR SKLSIQDQRQ TLPIYKLKKE LIQAVHDNQV
0601: LVVIGETGSG KTTQVTQYLA EAGYTTRGKI GCTQPRRVAA MSVAKRVAEE FGCRLGEEVG YAIRFEDCTG PETVIKYMTD GMLLREILVD ENLSQYSVVM
0701: LDEAHERTIH TDVLFGLLKQ LVKRRPDMRL IVTSATLDAE KFSGYFFNCN IFTIPGRTFP VEILYTKQPE SDYLDAALIT VLQIHLTEPE GDILVFLTGQ
0801: EEIDHACQCL YERMKGLGKD VPELIILPVY SALPSEMQSK IFEPAPPGKR KVVVATNIAE ASLTIDGIYY VIDPGFAKIN VYNSKQGLDS LVITPISQAS
0901: AKQRAGRAGR TGPGKCYRLY TESAYRNEMS PTTIPEIQRI NLGSTVLNMK AMGINDLLSF DFMDPPAPQA LISAMEQLYS LGALDEEGLL TKLGRKMAEF
1001: PLDPPLSKML LASVDLGCSD EILTIIAMIQ TGNIFYRPRE KQAQADQKRA KFFQPEGDHL TLLAVYEAWK AKNFSGPWCF ENFVQSRSLR RAQDVRKQLL
1101: TIMDRFAKKH CSVVYKNISQ WELVKMVVLF RRPIHGLFHC VFVIKCSDNL LSLHIQCWRY KLDVVAAGKN FTKIRKAITA GFFFHAARKD PQEGYRTLVE
1201: NQPVYIHPSS ALFQRQPDWV IYHELVMTTK EYMREVTVVD PKWLVELAPR FYKGADPTKM SKRKRQERIE PLYDRYHEPN SWRLSKRRA
0001: MEKEELNKLN HLSLVSNVCN ELETHLGSAE KVLAEFIIDL GRHSETVDEF DKNLKEAGAE MPDYFVRSLL TTIHGIYPPK PKSEKKKEEG DDQKFKGLAI
0101: KDTKDKVKEL EKEIEREAEE RRREEDRNRD RDRRESGRDR DRDRNRDRDD RRDRHRDRER NRGDEEGEDR RSDRRHRERG RGDGGEGEDR RRDRRAKDEY
0201: VEEDKGGANE PELYQVYKGR VTRVMDAGCF VQFDKFRGKE GLVHVSQMAT RRVDKAKEFV KRDMEVYVKV ISISSDKYSL SMRDVDQNTG RDLIPLRKPS
0301: DEDDSSRSNP SYRTKDGQVT KTGISGIRIV EENDVAPSRR PLKKMSSPER WEAKQLIASG VLRVDEFPMY DEDGDGMLYQ EEGAEEELEI EMNEDEPAFL
0401: QGQTRYSVDM SPVKIFKNPE GSLSRAAALQ SALTKERREM REQQQRTMLD SIPKDLNRPW EDPMPETGER HLAQELRGVG LSAYDMPEWK KDAFGKTPTF
0501: GQRSKLSIQE QRESLPIYKL KKELIQAVHD NQVLVVIGET GSGKTTQVTQ YLAEAGYTTK GKIGCTQPRR VAAMSVAKRV AEEFGCRLGE EVGYAIRFED
0601: CTGPDTVIKY MTDGMLLREI LIDENLSQYS VIMLDEAHER TIHTDVLFGL LKKLMKRRLD LRLIVTSATL DAEKFSGYFF NCNIFTIPGR TFPVEILYTK
0701: QPETDYLDAA LITVLQIHLT EPEGDILVFL TGQEEIDSAC QSLYERMKGL GKNVPELIIL PVYSALPSEM QSRIFDPPPP GKRKVVVATN IAEASLTIDG
0801: IYYVVDPGFA KQNVYNPKQG LESLVITPIS QASAKQRAGR AGRTGPGKCY RLYTESAYRN EMPPTSIPEI QRINLGMTTL TMKAMGINDL LSFDFMDPPQ
0901: PQALISAMEQ LYSLGALDEE GLLTKLGRKM AEFPLEPPLS KMLLASVDLG CSDEILTMIA MIQTGNIFYR PREKQAQADQ KRAKFFQPEG DHLTLLAVYE
1001: AWKAKNFSGP WCFENFIQSR SLRRAQDVRK QLLSIMDKYK LDVVTAGKNF TKIRKAITAG FFFHGARKDP QEGYRTLVEN QPVYIHPSSA LFQRQPDWVI
1101: YHDLVMTTKE YMREVTVIDP KWLVELAPRF FKVSDPTKMS KRKRQERIEP LYDRYHEPNS WRLSKRRA
0101: KDTKDKVKEL EKEIEREAEE RRREEDRNRD RDRRESGRDR DRDRNRDRDD RRDRHRDRER NRGDEEGEDR RSDRRHRERG RGDGGEGEDR RRDRRAKDEY
0201: VEEDKGGANE PELYQVYKGR VTRVMDAGCF VQFDKFRGKE GLVHVSQMAT RRVDKAKEFV KRDMEVYVKV ISISSDKYSL SMRDVDQNTG RDLIPLRKPS
0301: DEDDSSRSNP SYRTKDGQVT KTGISGIRIV EENDVAPSRR PLKKMSSPER WEAKQLIASG VLRVDEFPMY DEDGDGMLYQ EEGAEEELEI EMNEDEPAFL
0401: QGQTRYSVDM SPVKIFKNPE GSLSRAAALQ SALTKERREM REQQQRTMLD SIPKDLNRPW EDPMPETGER HLAQELRGVG LSAYDMPEWK KDAFGKTPTF
0501: GQRSKLSIQE QRESLPIYKL KKELIQAVHD NQVLVVIGET GSGKTTQVTQ YLAEAGYTTK GKIGCTQPRR VAAMSVAKRV AEEFGCRLGE EVGYAIRFED
0601: CTGPDTVIKY MTDGMLLREI LIDENLSQYS VIMLDEAHER TIHTDVLFGL LKKLMKRRLD LRLIVTSATL DAEKFSGYFF NCNIFTIPGR TFPVEILYTK
0701: QPETDYLDAA LITVLQIHLT EPEGDILVFL TGQEEIDSAC QSLYERMKGL GKNVPELIIL PVYSALPSEM QSRIFDPPPP GKRKVVVATN IAEASLTIDG
0801: IYYVVDPGFA KQNVYNPKQG LESLVITPIS QASAKQRAGR AGRTGPGKCY RLYTESAYRN EMPPTSIPEI QRINLGMTTL TMKAMGINDL LSFDFMDPPQ
0901: PQALISAMEQ LYSLGALDEE GLLTKLGRKM AEFPLEPPLS KMLLASVDLG CSDEILTMIA MIQTGNIFYR PREKQAQADQ KRAKFFQPEG DHLTLLAVYE
1001: AWKAKNFSGP WCFENFIQSR SLRRAQDVRK QLLSIMDKYK LDVVTAGKNF TKIRKAITAG FFFHGARKDP QEGYRTLVEN QPVYIHPSSA LFQRQPDWVI
1101: YHDLVMTTKE YMREVTVIDP KWLVELAPRF FKVSDPTKMS KRKRQERIEP LYDRYHEPNS WRLSKRRA
Arabidopsis Description
Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 [Source:UniProtKB/Swiss-Prot;Acc:Q38953]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.