Factsheet for Os02t0301500-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51663	Canola	nucleus	10.81	93.65
CDX91491	Canola	nucleus	10.62	92.06
CDY23338	Canola	cytosol	54.58	70.62
PGSC0003DMT400084916	Potato	nucleus	92.67	63.17
Os08t0335000-00	Rice	cytosol, nucleus	39.19	58.31
KRG97372	Soybean	nucleus	90.66	51.19
CDX83624	Canola	nucleus	93.77	45.92
CDY13640	Canola	nucleus	94.14	45.69
Os06t0192500-02	Rice	mitochondrion	34.07	45.59
Solyc01g110990.2.1	Tomato	nucleus	92.67	45.54
VIT_08s0056g00470.t01	Wine grape	nucleus	95.42	44.34
AT3G26560.1	Thale cress	nucleus	93.96	43.92
Bra025211.1-P	Field mustard	nucleus	94.14	43.89
GSMUA_Achr10P...	Banana	nucleus	78.21	43.79
Zm00001d015893_P001	Maize	nucleus, plasma membrane	99.08	43.77
EER95349	Sorghum	nucleus	99.45	43.72
KRH05918	Soybean	nucleus	95.79	43.69
KRH17401	Soybean	nucleus	95.79	43.47
TraesCS4B01G148500.1	Wheat	nucleus	97.99	43.35
Solyc07g039550.2.1	Tomato	nucleus	94.32	43.28
TraesCS4A01G158200.1	Wheat	nucleus	97.62	43.19
Os06t0343100-01	Rice	nucleus	85.71	43.17
HORVU0Hr1G007860.1	Barley	nucleus	97.8	43.0
TraesCS4D01G147900.1	Wheat	nucleus	97.99	41.51
PGSC0003DMT400056692	Potato	nucleus	85.35	40.84
Bra040091.1-P	Field mustard	nucleus	55.31	38.18
Os03t0314100-01	Rice	cytosol, nucleus, plastid	38.28	37.06
Os01t0212100-01	Rice	nucleus	47.44	37.0
Os11t0310800-01	Rice	nucleus	40.48	31.21
Os05t0389800-01	Rice	nucleus	52.01	26.54
Os01t0118100-01	Rice	cytosol, mitochondrion, nucleus	32.97	22.0
Os07t0508000-01	Rice	nucleus	50.0	21.33
Os10t0471350-01	Rice	nucleus	34.62	18.94
Os03t0748800-01	Rice	mitochondrion	33.52	15.91
Os02t0736600-01	Rice	nucleus	35.16	15.09
Os01t0767700-01	Rice	nucleus	28.57	12.76
Os07t0621500-01	Rice	cytosol, nucleus	28.94	12.28
Os04t0432200-00	Rice	extracellular	0.92	6.85
Os02t0736800-01	Rice	mitochondrion	0.0	0.0

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	ProteinID:BAF08537.1	ProteinID:BAS78255.1	InterPro:DNA/RNA_helicase_DEAH_CS	InterPro:DUF1605
GO:GO:0000398	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004004
GO:GO:0004386	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005681	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016787	InterPro:Helicase-assoc_dom	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
EnsemblPlantsGene:Os02g0301500	EnsemblPlants:Os02t0301500-01	InterPro:P-loop_NTPase	PFAM:PF00271	PFAM:PF04408	PFAM:PF07717
ScanProsite:PS00690	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR18934	PANTHER:PTHR18934:SF120	UniProt:Q0E1V1
SMART:SM00490	SMART:SM00847	SUPFAM:SSF52540	UniParc:UPI0000DF067E	:	:

Description

Similar to ATP dependent RNA helicase. (Os02t0301500-01)

Coordinates

chr2:+:11670440..11673580

Molecular Weight (calculated)

62282.3 Da

IEP (calculated)

8.485

GRAVY (calculated)

-0.308

Length

546 amino acids

Sequence
(BLAST)

001: DENLSQYSVI MLDEAHERTI HTDVLFGLLK QLIKRRSDMR LIVTSATLDA EKFSGYFFNC NIFTIPGRTF PVEILYTKQP ESDYLDAALI TVLQIHLTEP
101: EGDILLFLTG QEEIDHACQC LYERMKGLGK DVPELIILPV YSALPSEMQS KIFDPAPPGK RKVVVATNIA EASLTIDGIY YVVDPGFAKI NVYNSKQGLD
201: SLVITPISQA SAKQRAGRAG RTGPGKCYRL YTESAYRNEM SPTTIPEIQR INLGSTVLNM KAMGINDLLS FDFMDPPAPQ ALISAMEQLY SLGALDEEGL
301: LTKLGRKMAE FPLDPPLSKM LLASVDLGCS DEILTIIAMI QTGNIFYRPR EKQAQADQKR AKFFQPEGDH LTLLAVYEAW KAKNFSGPWC FENFVQSRSL
401: RRAQDVRKQL LTIMDRYKLD VVSAGRNFTK IRKAITAGFF FHAARKDPQE GYRTLVENQP VYIHPSSALF QRQPDWVIYH ELVMTTKEYM REVTVIDPKW
501: LTELAPRFYK SADPTKMSKR KRQERIEPLY DRYHEPNSWR LSKRRA

Best Arabidopsis Sequence Match ( AT3G26560.1 )
(BLAST)

0001: MEKEELNKLN HLSLVSNVCN ELETHLGSAE KVLAEFIIDL GRHSETVDEF DKNLKEAGAE MPDYFVRSLL TTIHGIYPPK PKSEKKKEEG DDQKFKGLAI
0101: KDTKDKVKEL EKEIEREAEE RRREEDRNRD RDRRESGRDR DRDRNRDRDD RRDRHRDRER NRGDEEGEDR RSDRRHRERG RGDGGEGEDR RRDRRAKDEY
0201: VEEDKGGANE PELYQVYKGR VTRVMDAGCF VQFDKFRGKE GLVHVSQMAT RRVDKAKEFV KRDMEVYVKV ISISSDKYSL SMRDVDQNTG RDLIPLRKPS
0301: DEDDSSRSNP SYRTKDGQVT KTGISGIRIV EENDVAPSRR PLKKMSSPER WEAKQLIASG VLRVDEFPMY DEDGDGMLYQ EEGAEEELEI EMNEDEPAFL
0401: QGQTRYSVDM SPVKIFKNPE GSLSRAAALQ SALTKERREM REQQQRTMLD SIPKDLNRPW EDPMPETGER HLAQELRGVG LSAYDMPEWK KDAFGKTPTF
0501: GQRSKLSIQE QRESLPIYKL KKELIQAVHD NQVLVVIGET GSGKTTQVTQ YLAEAGYTTK GKIGCTQPRR VAAMSVAKRV AEEFGCRLGE EVGYAIRFED
0601: CTGPDTVIKY MTDGMLLREI LIDENLSQYS VIMLDEAHER TIHTDVLFGL LKKLMKRRLD LRLIVTSATL DAEKFSGYFF NCNIFTIPGR TFPVEILYTK
0701: QPETDYLDAA LITVLQIHLT EPEGDILVFL TGQEEIDSAC QSLYERMKGL GKNVPELIIL PVYSALPSEM QSRIFDPPPP GKRKVVVATN IAEASLTIDG
0801: IYYVVDPGFA KQNVYNPKQG LESLVITPIS QASAKQRAGR AGRTGPGKCY RLYTESAYRN EMPPTSIPEI QRINLGMTTL TMKAMGINDL LSFDFMDPPQ
0901: PQALISAMEQ LYSLGALDEE GLLTKLGRKM AEFPLEPPLS KMLLASVDLG CSDEILTMIA MIQTGNIFYR PREKQAQADQ KRAKFFQPEG DHLTLLAVYE
1001: AWKAKNFSGP WCFENFIQSR SLRRAQDVRK QLLSIMDKYK LDVVTAGKNF TKIRKAITAG FFFHGARKDP QEGYRTLVEN QPVYIHPSSA LFQRQPDWVI
1101: YHDLVMTTKE YMREVTVIDP KWLVELAPRF FKVSDPTKMS KRKRQERIEP LYDRYHEPNS WRLSKRRA

Arabidopsis Description

Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 [Source:UniProtKB/Swiss-Prot;Acc:Q38953]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.