Factsheet for Os03t0314100-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os05t0550000-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62310.1	Os05t0550000-00	AT1G17970.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P18470_001	Banana	cytosol	51.95	82.3
TraesCS4A01G124200.2	Wheat	cytosol	90.96	71.35
TraesCS4D01G181700.1	Wheat	cytosol	91.13	71.29
HORVU4Hr1G052730.3	Barley	cytosol	90.78	71.01
TraesCS4B01G180200.1	Wheat	cytosol	90.78	71.01
KXG39505	Sorghum	cytosol	90.78	70.91
Zm00001d028923_P002	Maize	nucleus	89.36	69.9
Zm00001d047601_P006	Maize	nucleus	90.43	65.98
KRG96553	Soybean	nucleus	83.69	65.46
KRH68290	Soybean	nucleus	83.51	65.42
VIT_07s0005g01770.t01	Wine grape	nucleus	84.04	65.11
KRH69191	Soybean	nucleus	83.16	64.96
Bra007671.1-P	Field mustard	nucleus	81.38	63.93
CDX76626	Canola	nucleus	81.38	63.93
CDY11413	Canola	nucleus	81.38	63.93
AT2G47250.1	Thale cress	nucleus	82.27	63.65
AT3G62310.1	Thale cress	nucleus	81.91	63.64
PGSC0003DMT400023284	Potato	nucleus	81.56	63.62
CDX74061	Canola	cytosol	36.17	63.55
CDX83337	Canola	cytosol	81.38	63.49
Bra000445.1-P	Field mustard	cytosol	81.38	63.49
Solyc01g079250.2.1	Tomato	nucleus	81.38	63.49
CDX95715	Canola	cytosol	81.21	63.17
CDX74059	Canola	nucleus	29.08	62.12
Bra001237.1-P	Field mustard	cytosol	46.99	61.34
Bra001238.1-P	Field mustard	cytosol, mitochondrion	28.19	60.23
KRH31768	Soybean	cytosol, nucleus	60.82	59.45
Bra003744.1-P	Field mustard	nucleus	68.97	58.06
CDY68405	Canola	nucleus	68.44	57.61
Os08t0335000-00	Rice	cytosol, nucleus	34.4	52.86
Os02t0301500-01	Rice	nucleus	37.06	38.28
Os01t0212100-01	Rice	nucleus	44.15	35.57
Os11t0310800-01	Rice	nucleus	38.83	30.93
Os06t0192500-02	Rice	mitochondrion	21.28	29.41
AT5G14900.1	Thale cress	cytosol	14.36	26.91
Os05t0389800-01	Rice	nucleus	50.53	26.64
Os06t0343100-01	Rice	nucleus	49.65	25.83
Os10t0471350-01	Rice	nucleus	37.41	21.14
Os07t0508000-01	Rice	nucleus	42.55	18.75
Os01t0118100-01	Rice	cytosol, mitochondrion, nucleus	25.18	17.36
Os03t0748800-01	Rice	mitochondrion	34.75	17.04
Os02t0736600-01	Rice	nucleus	35.28	15.64
Os01t0767700-01	Rice	nucleus	32.09	14.8
Os07t0621500-01	Rice	cytosol, nucleus	18.09	7.93
Os04t0432200-00	Rice	extracellular	0.0	0.0
Os02t0736800-01	Rice	mitochondrion	0.0	0.0

Protein Annotations

Gene3D:1.20.120.1080	Gene3D:3.40.50.300	MapMan:35.1	InterPro:AAA+_ATPase	ProteinID:ABF95604.1	EMBL:AK064890
ProteinID:BAF11845.1	ProteinID:BAS83887.1	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006396
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	InterPro:Helicase-assoc_dom	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	EnsemblPlantsGene:Os03g0314100	EnsemblPlants:Os03t0314100-01	InterPro:P-loop_NTPase
PFAM:PF00271	PFAM:PF04408	PFAM:PF13401	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR18934
PANTHER:PTHR18934:SF193	UniProt:Q10MC6	SMART:SM00487	SMART:SM00490	SMART:SM00847	SUPFAM:SSF52540
UniParc:UPI0000DB49A3	SEG:seg	:	:	:	:

Description

PRP-22 proteinDEAD-like helicase, N-terminal domain containing protein. (Os03t0314100-01);Similar to Predicted protein. (Os03t0314100-02)

Coordinates

chr3:+:11237786..11241416

Molecular Weight (calculated)

62708.9 Da

IEP (calculated)

7.169

GRAVY (calculated)

-0.198

Length

564 amino acids

Sequence
(BLAST)

001: MGTERKRKVS LFDVVDETSV SAKLGRAATT NGSAAAAAAN PSINRWTGRP YSARYLEILE KRRTLPVWQQ KDDFLAVLRD NQTLILVGET GSGKTTQIPQ
101: FVLEAEGLSN RSMVACTQPR RVAAMSVSRR VAEEMDVTIG EEVGYSIRFE DCSSHKTVLK YLTDGMLLRE AMADPLLERY KVIVLDEAHE RTLATDVLFG
201: LLKEVLKNRP DLKLVVMSAT LEAEKFQTYF SGAPLMKVPG RLHPVEIFYT QEPERDYLEA AIRTVVQIHM CEPAGDILVF LTGEEEIEDA CRKINKEINN
301: MGDQVGPVKV VPLYSTLPPA MQQKIFEPAP APSREGGPAG RKIVVSTNIA ETSLTIDGIV YVIDPGFSKQ KVYNPRIRVE SLLVSPISKA SAHQRAGRAG
401: RTQPGKCFRL YTEKSFNDDL QPQTYPEILR SNLANTVLTL KKLGIDDLVH FDFMDPPAPE TLMRALEVLN YLGALDDDGN LTPLGETMSE FPLDPQMSKM
501: LVISPKYNCS NEILSISAML SGMSNKTSCR HMVCQLNYIV RNNNTRTILL ASIAHCRKLT SFLS

Best Arabidopsis Sequence Match ( AT2G47250.1 )
(BLAST)

001: MGTERKRKVS LFDVMEDPSL SSKNTKSNGL GLAAAAGGGS NLINKWNGKA YSQRYFEILE KRRDLPVWLQ KDDFLNTLNS NQTLILVGET GSGKTTQIPQ
101: FVLDAVVADN SDKGRKWLVG CTQPRRVAAM SVSRRVADEM DVSIGEEVGY SIRFEDCTSS RTMLKYLTDG MLLREAMADP LLERYKVIIL DEAHERTLAT
201: DVLFGLLKEV LRNRPDLKLV VMSATLEAEK FQEYFSGAPL MKVPGRLHPV EIFYTQEPER DYLEAAIRTV VQIHMCEPPG DILVFLTGEE EIEDACRKIN
301: KEVSNLGDQV GPVKVVPLYS TLPPAMQQKI FDPAPVPLTE GGPAGRKIVV STNIAETSLT IDGIVYVIDP GFAKQKVYNP RIRVESLLVS PISKASAHQR
401: SGRAGRTRPG KCFRLYTEKS FNNDLQPQTY PEILRSNLAN TVLTLKKLGI DDLVHFDFMD PPAPETLMRA LEVLNYLGAL DDEGNLTKTG EIMSEFPLDP
501: QMSKMLIVSP EFNCSNEILS VSAMLSVPNC FVRPREAQKA ADEAKARFGH IDGDHLTLLN VYHAYKQNNE DPNWCFENFV NNRAMKSADN VRQQLVRIMS
601: RFNLKMCSTD FNSRDYYVNI RKAMLAGYFM QVAHLERTGH YLTVKDNQVV HLHPSNCLDH KPEWVIYNEY VLTTRNFIRT VTDIRGEWLV DVAQHYYDLS
701: NFPNCEAKRA LEKLYKKRER EKNESKNRK

Arabidopsis Description

Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH3 [Source:UniProtKB/Swiss-Prot;Acc:O22899]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.