Factsheet for GSMUA_Achr1P18470_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P23200_001
GSMUA_Achr3P29390_001
GSMUA_Achr4P11130_001
GSMUA_Achr9P21480_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62310.1	GSMUA_Achr1P23200_001	AT1G17970.1	21798944
AT3G62310.1	GSMUA_Achr3P29390_001	AT1G17970.1	21798944
AT3G62310.1	GSMUA_Achr4P11130_001	AT1G17970.1	21798944
AT3G62310.1	GSMUA_Achr9P21480_001	AT1G17970.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0314100-01	Rice	cytosol, nucleus, plastid	82.3	51.95
Bra001237.1-P	Field mustard	cytosol	52.53	43.29
CDX74061	Canola	cytosol	37.92	42.06
GSMUA_Achr3P12710_001	Banana	nucleus	84.27	41.32
TraesCS4B01G180200.1	Wheat	cytosol	83.15	41.05
TraesCS4A01G124200.2	Wheat	cytosol	82.87	41.03
TraesCS4D01G181700.1	Wheat	cytosol	82.87	40.92
HORVU4Hr1G052730.3	Barley	cytosol	82.58	40.78
KRG96553	Soybean	nucleus	82.02	40.5
KXG39505	Sorghum	cytosol	82.02	40.44
KRH68290	Soybean	nucleus	81.74	40.42
Zm00001d028923_P002	Maize	nucleus	81.18	40.08
VIT_07s0005g01770.t01	Wine grape	nucleus	81.74	39.97
Bra007671.1-P	Field mustard	nucleus	80.06	39.69
KRH69191	Soybean	nucleus	80.34	39.61
CDY11413	Canola	nucleus	79.78	39.55
CDX76626	Canola	nucleus	79.49	39.41
AT3G62310.1	Thale cress	nucleus	79.78	39.12
Solyc01g079250.2.1	Tomato	nucleus	78.93	38.87
PGSC0003DMT400023284	Potato	nucleus	78.93	38.87
CDX83337	Canola	cytosol	78.37	38.59
Bra000445.1-P	Field mustard	cytosol	78.37	38.59
AT2G47250.1	Thale cress	nucleus	78.37	38.27
CDX74059	Canola	nucleus	28.37	38.26
CDX95715	Canola	cytosol	77.81	38.21
Zm00001d047601_P006	Maize	nucleus	82.02	37.77
Bra001238.1-P	Field mustard	cytosol, mitochondrion	27.81	37.5
Bra003744.1-P	Field mustard	nucleus	68.26	36.27
KRH31768	Soybean	cytosol, nucleus	58.71	36.22
CDY68405	Canola	nucleus	67.7	35.97
GSMUA_Achr11P...	Banana	nucleus	36.8	34.56
GSMUA_Achr3P24350_001	Banana	endoplasmic reticulum, vacuole	49.44	24.75
GSMUA_Achr2P20940_001	Banana	nucleus	39.61	21.01
GSMUA_Achr4P23370_001	Banana	nucleus	43.82	20.8
GSMUA_Achr10P...	Banana	nucleus	42.7	15.59
GSMUA_Achr5P05110_001	Banana	nucleus	42.98	15.06
GSMUA_Achr8P12540_001	Banana	nucleus	21.91	14.13
GSMUA_Achr3P08220_001	Banana	nucleus	33.15	10.98
GSMUA_Achr4P07530_001	Banana	mitochondrion	32.58	9.96
GSMUA_Achr5P02110_001	Banana	mitochondrion	29.21	9.24
GSMUA_Achr3P20920_001	Banana	mitochondrion, nucleus	32.02	9.11
GSMUA_Achr6P17860_001	Banana	nucleus	30.62	7.66
GSMUA_Achr8P17640_001	Banana	nucleus	24.44	7.06
GSMUA_Achr8P12550_001	Banana	cytosol	8.99	7.03
AT5G14900.1	Thale cress	cytosol	5.9	6.98

Protein Annotations

EnsemblPlants:GSMUA_Achr1P18470_001	EnsemblPlants:GSMUA_Achr1T18470_001	EnsemblPlantsGene:GSMUA_Achr1G18470_001	Gene3D:1.10.10.2130	Gene3D:3.40.50.300	InterPro:Helicase_ATP-bd
InterPro:IPR014001	InterPro:P-loop_NTPase	ncoils:Coil	PANTHER:PTHR18934	PANTHER:PTHR18934:SF193	PFscan:PS51192
SEG:seg	SMART:SM00487	SUPFAM:SSF52540	UniParc:UPI000296CAF7	UniProt:M0S105	MapMan:35.1

Description

Probable pre-mRNA-splicing factor ATP-dependent RNA helicase [Source:GMGC_GENE;Acc:GSMUA_Achr1G18470_001]

Coordinates

chr1:-:13813510..13818636

Molecular Weight (calculated)

40594.1 Da

IEP (calculated)

4.917

GRAVY (calculated)

-0.146

Length

356 amino acids

Sequence
(BLAST)

001: MLKVSLFDVV DESSSRRYHE ILEKRQTLPV WHQKDEFLKV LKASQCSSLF TRTSLSGLTR ILSHVLIPQF VLEYDDLGKH PMVACTQPRR VAAMSVSRRV
101: AEGMDVTIGE EVGYSIRFED CSSHKTVLKY LTDGMLLREA MADPLLERDE AHEQTLATDV LFGLLKEVLR NRPDLKLVVM SATLEAEKFR DYFSGAPLMR
201: VPGRLHEAEI FYTQERERDY LEAGIRTVVQ IYVCEPAGDI LVFLTSEEEI EDACKKITKE INNLGDQIVV STNIAETSLT IDGIVYVIDP GFSKQKVYNP
301: RIQKSFKNDL QDQTYPEILL SNLANMVLNL KKLGIDDLVH FDFMDPPAPE TLMWVL

Best Arabidopsis Sequence Match ( AT3G62310.3 )
(BLAST)

001: MGTERKRKIS LFDVMDDPSA PAKNAKTSGL PDGGINSLIN KWNGKPYSQR YYDILEKRRT LPVWLQKEEF LKTLNNNQTL ILVGETGSGK TTQIPQFVID
101: AVDAETSDKR RKWLVGCTQP RRVAAMSVSR RVAEEMDVTI GEEVGYSIRF EDCSSPRTVL KYLTDGMLLR EAMADPLLER YKVIILDEAH ERTLATDVLF
201: GLLKEVLKNR PDLKLVVMSA TLEAEKFQDY FSGAPLMKVP GRLHPVEIFY TQEPERDYLE AAIRTVVQIH MCEPPGDILV FLTGEEEIED ACRKINKEVG
301: NLGDQVGPIK VVPLYSTLPP AMQQKIFDPA PEPVTEGGPP GRKIVVSTNI AETSLTIDGI VYVIDPGFAK QKVYNPRIRV ESLLVSPISK ASAHQRSGRA
401: GRTRPGKCFR LYTEKSFNND LQPQTYPEIL RSNLANTVLT LKKLGIDDLV HFDFMDPPAP ETLMRALEVL NYLGALDDDG NLTKTGEIMS EFPLDPQMAK
501: MLIVSPEFNC SNEILSVSAM LSVAVSQLFS LMKQMVSVSS PLCIC

Arabidopsis Description

Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZQ9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.