Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr1P18470_001 | Banana | cytosol | 41.32 | 84.27 |
| GSMUA_Achr3P24350_001 | Banana | endoplasmic reticulum, vacuole | 51.52 | 52.6 |
| GSMUA_Achr4P23370_001 | Banana | nucleus | 43.53 | 42.13 |
| GSMUA_Achr11P... | Banana | nucleus | 21.9 | 41.95 |
| GSMUA_Achr2P20940_001 | Banana | nucleus | 31.41 | 33.98 |
| GSMUA_Achr10P... | Banana | nucleus | 41.32 | 30.77 |
| GSMUA_Achr5P05110_001 | Banana | nucleus | 41.87 | 29.92 |
| GSMUA_Achr8P12550_001 | Banana | cytosol | 18.59 | 29.67 |
| GSMUA_Achr3P08220_001 | Banana | nucleus | 31.96 | 21.58 |
| GSMUA_Achr4P07530_001 | Banana | mitochondrion | 32.23 | 20.09 |
| GSMUA_Achr3P20920_001 | Banana | mitochondrion, nucleus | 31.82 | 18.47 |
| GSMUA_Achr5P02110_001 | Banana | mitochondrion | 27.82 | 17.94 |
| GSMUA_Achr8P12540_001 | Banana | nucleus | 12.81 | 16.85 |
| GSMUA_Achr6P17860_001 | Banana | nucleus | 29.61 | 15.11 |
| GSMUA_Achr8P17640_001 | Banana | nucleus | 25.21 | 14.85 |
Protein Annotations
| Gene3D:1.20.120.1080 | MapMan:16.4.7.3.3 | Gene3D:3.40.50.300 | InterPro:AAA+_ATPase | InterPro:DEAD/DEAH_box_helicase_dom | InterPro:DUF1605 |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004386 | GO:GO:0005488 |
| GO:GO:0005524 | GO:GO:0016787 | EnsemblPlantsGene:GSMUA_Achr3G12710_001 | EnsemblPlants:GSMUA_Achr3P12710_001 | EnsemblPlants:GSMUA_Achr3T12710_001 | InterPro:Helicase-assoc_dom |
| InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | UniProt:M0SE38 | InterPro:P-loop_NTPase |
| PFAM:PF00270 | PFAM:PF00271 | PFAM:PF04408 | PFAM:PF07717 | PFscan:PS51192 | PFscan:PS51194 |
| PANTHER:PTHR18934 | PANTHER:PTHR18934:SF193 | SMART:SM00382 | SMART:SM00487 | SMART:SM00490 | SMART:SM00847 |
| SUPFAM:SSF52540 | UniParc:UPI000295CA52 | SEG:seg | : | : | : |
Description
Probable pre-mRNA-splicing factor ATP-dependent RNA helicase [Source:GMGC_GENE;Acc:GSMUA_Achr3G12710_001]
Coordinates
chr3:+:9419861..9425435
Molecular Weight (calculated)
82424.4 Da
IEP (calculated)
7.388
GRAVY (calculated)
-0.346
Length
726 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTERKRKVS LFDVVDDTSV SVKLGKANGS LSAKTAALPP GVNRWSGRPY SQRYHEILEK RKTLPVWQQK EEFLHVLKAN QTLILVGETG SGKTTQIPQF
101: VLECEDLGKR PMVACTQPRR VAAMSVSRRV AEEMDVTIGE EVGYSIRFED CSSHRTILKY LTDGMLLREA MADPLLERYK VIILDEAHER TLATDVLFGL
201: LKEVLRNRPD LKLVVMSATL EAEKFQGYFS GAPLMKVPGR LHPVEIFYTQ EPERDYLEAA IRTVVQIHMC EPSGDILVFL TGEEEIEDAC RKITKEINNM
301: GDQVGPVKVV PLYSTLPPAM QQKIFEPAPA PLEEGGPPGR KIVVSTNIAE TSLTIDGIVY VIDPGFSKQK VYNPRIRVES LLVSPISKAS AHQRAGRAGR
401: TQPGKCFRLY TERSFKNDLQ EQTYPEILRS NLANTVLTLK KLGIDDLVHF DFMDPPAPET LMRALEVLNY LGALDDDGNL TKLGELMSEF PLDPQMAKML
501: VVSPEFNCSN EIVSISAMLS VPNCFLRPRE AQKAADEAKA RFGHIDGDHL TLLNVYHAYK QNSEDSSWCY ENFINQRTLK AADNVRQQLV RIMARFNLKL
601: CSTDFNSRDY YINIRKAMLA GYFMQVAHLE RTGHYLTVKD NQVVHLHPST CLDHKPEWVI YNEYVLTSRN FIRTVTDIRG EWLIDIAPHY YDLSNFPSCE
701: AKRVLERLYN KRDKEKGESK TRNKPL
101: VLECEDLGKR PMVACTQPRR VAAMSVSRRV AEEMDVTIGE EVGYSIRFED CSSHRTILKY LTDGMLLREA MADPLLERYK VIILDEAHER TLATDVLFGL
201: LKEVLRNRPD LKLVVMSATL EAEKFQGYFS GAPLMKVPGR LHPVEIFYTQ EPERDYLEAA IRTVVQIHMC EPSGDILVFL TGEEEIEDAC RKITKEINNM
301: GDQVGPVKVV PLYSTLPPAM QQKIFEPAPA PLEEGGPPGR KIVVSTNIAE TSLTIDGIVY VIDPGFSKQK VYNPRIRVES LLVSPISKAS AHQRAGRAGR
401: TQPGKCFRLY TERSFKNDLQ EQTYPEILRS NLANTVLTLK KLGIDDLVHF DFMDPPAPET LMRALEVLNY LGALDDDGNL TKLGELMSEF PLDPQMAKML
501: VVSPEFNCSN EIVSISAMLS VPNCFLRPRE AQKAADEAKA RFGHIDGDHL TLLNVYHAYK QNSEDSSWCY ENFINQRTLK AADNVRQQLV RIMARFNLKL
601: CSTDFNSRDY YINIRKAMLA GYFMQVAHLE RTGHYLTVKD NQVVHLHPST CLDHKPEWVI YNEYVLTSRN FIRTVTDIRG EWLIDIAPHY YDLSNFPSCE
701: AKRVLERLYN KRDKEKGESK TRNKPL
001: MGTERKRKIS LFDVMDDPSA PAKNAKTSGL PDGGINSLIN KWNGKPYSQR YYDILEKRRT LPVWLQKEEF LKTLNNNQTL ILVGETGSGK TTQIPQFVID
101: AVDAETSDKR RKWLVGCTQP RRVAAMSVSR RVAEEMDVTI GEEVGYSIRF EDCSSPRTVL KYLTDGMLLR EAMADPLLER YKVIILDEAH ERTLATDVLF
201: GLLKEVLKNR PDLKLVVMSA TLEAEKFQDY FSGAPLMKVP GRLHPVEIFY TQEPERDYLE AAIRTVVQIH MCEPPGDILV FLTGEEEIED ACRKINKEVG
301: NLGDQVGPIK VVPLYSTLPP AMQQKIFDPA PEPVTEGGPP GRKIVVSTNI AETSLTIDGI VYVIDPGFAK QKVYNPRIRV ESLLVSPISK ASAHQRSGRA
401: GRTRPGKCFR LYTEKSFNND LQPQTYPEIL RSNLANTVLT LKKLGIDDLV HFDFMDPPAP ETLMRALEVL NYLGALDDDG NLTKTGEIMS EFPLDPQMAK
501: MLIVSPEFNC SNEILSVSAM LSVPNCFIRP REAQKAADEA KARFGHIEGD HLTLLNVYHA FKQNNEDPNW CYENFINNRA MKSADNVRQQ LVRIMSRFNL
601: KMCSTDFNSR DYYINIRKAM LAGYFMQVAH LERTGHYLTV KDNQVVHLHP SNCLDHKPEW VIYNEYVLTS RNFIRTVTDI RGEWLVDVAS HYYDLSNFPN
701: CEAKRVIEKL YKKREREKEE SKKNRK
101: AVDAETSDKR RKWLVGCTQP RRVAAMSVSR RVAEEMDVTI GEEVGYSIRF EDCSSPRTVL KYLTDGMLLR EAMADPLLER YKVIILDEAH ERTLATDVLF
201: GLLKEVLKNR PDLKLVVMSA TLEAEKFQDY FSGAPLMKVP GRLHPVEIFY TQEPERDYLE AAIRTVVQIH MCEPPGDILV FLTGEEEIED ACRKINKEVG
301: NLGDQVGPIK VVPLYSTLPP AMQQKIFDPA PEPVTEGGPP GRKIVVSTNI AETSLTIDGI VYVIDPGFAK QKVYNPRIRV ESLLVSPISK ASAHQRSGRA
401: GRTRPGKCFR LYTEKSFNND LQPQTYPEIL RSNLANTVLT LKKLGIDDLV HFDFMDPPAP ETLMRALEVL NYLGALDDDG NLTKTGEIMS EFPLDPQMAK
501: MLIVSPEFNC SNEILSVSAM LSVPNCFIRP REAQKAADEA KARFGHIEGD HLTLLNVYHA FKQNNEDPNW CYENFINNRA MKSADNVRQQ LVRIMSRFNL
601: KMCSTDFNSR DYYINIRKAM LAGYFMQVAH LERTGHYLTV KDNQVVHLHP SNCLDHKPEW VIYNEYVLTS RNFIRTVTDI RGEWLVDVAS HYYDLSNFPN
701: CEAKRVIEKL YKKREREKEE SKKNRK
Arabidopsis Description
Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZQ9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.