Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os04t0432200-00 | Rice | extracellular | 3.65 | 71.23 |
| TraesCS2A01G304100.1 | Wheat | nucleus, plastid | 63.32 | 63.05 |
| TraesCS2B01G320800.1 | Wheat | nucleus, plastid | 63.11 | 62.89 |
| TraesCS2D01G302700.1 | Wheat | plastid | 62.61 | 62.35 |
| KXG26332 | Sorghum | nucleus, plastid | 62.33 | 62.2 |
| Zm00001d003655_P006 | Maize | nucleus, plastid | 62.19 | 62.15 |
| VIT_12s0035g00800.t01 | Wine grape | nucleus | 54.25 | 56.39 |
| KRH01863 | Soybean | nucleus | 56.71 | 56.12 |
| Solyc01g103690.2.1 | Tomato | nucleus | 55.59 | 55.01 |
| CDY39917 | Canola | nucleus | 53.34 | 53.72 |
| AT1G58060.1 | Thale cress | nucleus | 55.02 | 53.67 |
| CDY29164 | Canola | nucleus | 53.34 | 53.3 |
| Bra027890.1-P | Field mustard | nucleus | 48.28 | 51.65 |
| AT1G58050.1 | Thale cress | nucleus | 51.23 | 51.45 |
| CDY63687 | Canola | nucleus, plastid | 34.65 | 44.41 |
| GSMUA_Achr8P12550_001 | Banana | cytosol | 13.21 | 41.32 |
| GSMUA_Achr11P... | Banana | nucleus | 8.36 | 31.4 |
| GSMUA_Achr1P18470_001 | Banana | cytosol | 7.66 | 30.62 |
| GSMUA_Achr4P07530_001 | Banana | mitochondrion | 25.02 | 30.56 |
| GSMUA_Achr3P12710_001 | Banana | nucleus | 15.11 | 29.61 |
| GSMUA_Achr3P20920_001 | Banana | mitochondrion, nucleus | 25.23 | 28.7 |
| GSMUA_Achr8P12540_001 | Banana | nucleus | 10.96 | 28.26 |
| GSMUA_Achr2P20940_001 | Banana | nucleus | 13.0 | 27.57 |
| GSMUA_Achr3P24350_001 | Banana | endoplasmic reticulum, vacuole | 13.42 | 26.86 |
| GSMUA_Achr5P02110_001 | Banana | mitochondrion | 21.01 | 26.55 |
| GSMUA_Achr4P23370_001 | Banana | nucleus | 13.77 | 26.13 |
| GSMUA_Achr10P... | Banana | nucleus | 14.27 | 20.82 |
| GSMUA_Achr5P05110_001 | Banana | nucleus | 14.69 | 20.57 |
| GSMUA_Achr3P08220_001 | Banana | nucleus | 15.18 | 20.09 |
| GSMUA_Achr8P17640_001 | Banana | nucleus | 11.45 | 13.23 |
Protein Annotations
| Gene3D:1.20.120.1080 | Gene3D:3.30.160.20 | Gene3D:3.40.50.300 | MapMan:35.1 | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom |
| InterPro:DUF1605 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004386 |
| GO:GO:0005488 | GO:GO:0005524 | GO:GO:0016787 | EnsemblPlantsGene:GSMUA_Achr6G17860_001 | EnsemblPlants:GSMUA_Achr6P17860_001 | EnsemblPlants:GSMUA_Achr6T17860_001 |
| InterPro:Helicase-assoc_dom | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | UniProt:M0T7Y4 |
| InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFAM:PF04408 | PFAM:PF07717 | PFscan:PS51192 |
| PFscan:PS51194 | PANTHER:PTHR18934 | PANTHER:PTHR18934:SF190 | SMART:SM00487 | SMART:SM00490 | SMART:SM00847 |
| SUPFAM:SSF52540 | UniParc:UPI0002952229 | SEG:seg | : | : | : |
Description
DEAD/DEAH box helicase domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G17860_001]
Coordinates
chr6:+:12035014..12069941
Molecular Weight (calculated)
158419.0 Da
IEP (calculated)
6.057
GRAVY (calculated)
-0.258
Length
1423 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAPKKKQQRA SNKAASKAKL QSADAKPAPK LQISAENERR LRRLLLNTER PAAAEGPSLA AADAASRTQK AKRLRGVYDK LSLEGFSADQ IEQALSALGE
0101: GATFEGALDW LCFNLPGNQL PMKFSSGAST SNLEGTERSV KIISAAREDW VPQQRQPESI PKSLLEIKVK RDELSLDIGK SSHKEWIQQY LEREEEEDEP
0201: NSQAASIEYH QAGLGDVEAK QKGDEKSFHD EILLSGLQEE STTKMTEEIA CNSAFTISLE LKASDDQQNP GQSKVVNLEA DEADHFKAVD SSVSLLEGHV
0301: NETDKKTEEV EELELDNLFS EDCSSSITLP AEISTQKNKK SLSQFAFRYN LGSIDDIWMK GDTGKIPKAV LQKLCQKLGW EPPKYSKLSG KEDKFLYAVS
0401: ILRSASGRGK SRNAGGLISI QLPNGGESFK SVEDAQNKVA SYALCQLFPE LPLCQMLMEP YSSFVSMWHN DELPANLVEN EDARRAGFVD SLLNADSSLP
0501: MSSVDAKRIS VGEKLVKAEN LEVTIDCPIE TAKVIPSGMY SCYPEQRESI FLKKELENKM KQPEYMKILE ARDSLPISKL KSNILQLLVE NDVIVVCGET
0601: GCGKTTQVPQ FILDDMIQSG LGGYCNIVCT QPRRLAAISV AERVSDERCE PSPGCDGSLV GYQVRLDVAR NEKTKLLFCT TGILLRKLAV NKDLAGITHV
0701: IVDEVHERSL LGDFLLIVLK NLIEKQSDTA RQKLKVVLMS ATVDSSLFSR YFGNCPVISA EGRTHPVSTY FLEDVYERLD YCLALDAAAS GTSMTGYRGK
0801: LKGSIVDNHR GKKNIVLSSW GDESLLSEDY VNPHYIPDQY ASYSDRTRQN LKRLNEDVID FDLLEDLICF IDENYPPGAI LVFLPGVAEI DLLVDKLTAS
0901: YQFGGILLDW ILPLHSSLSA FEQKKVFLTP PQNIRKVIVA TDIAETSITI DDVIYVVDAG KHKEKRYNAQ KKMSSMVEDW ISKANAKQRR GRAGRVKPGI
1001: CFCLYTCHRY EVLMRPFQVP EMVRMPLTEL CLQIKSLSLG DTKSFLLQAI EPPREDVISS AIDLLYKVGA LDGNEELSPL GYHLAKLPVD VLIGKMMLYG
1101: AIFGCLSPIL SLAAFLSYKF PFVYPKDEKQ NVERAKSALL GNSLNNESAY EESYKQSDHL LMVVAYNKWA RILHQDGTRS AQQFCRSFFL NSSVMYTIRD
1201: MRVQFGGLLA DIGLVDLPKH LLSYERRKDK LDSWFSDMSQ PFNLNANHPS IIKSIICAGL YPNVAATTEG IVNSALAGTT LLASGLPLKD QTVLYDGKRE
1301: VHIHPSSVNH NVKHFRYPFL VFLEKVETSK VFLRDSSIIS PYSLFLFGGS MSIQHQAGLI TIDGWLKLTA PAQTAVLFKE LRLTLHAVLK ELIRKPETAT
1401: FSKNEVVKSI VQLLLEEDKD QTS
0101: GATFEGALDW LCFNLPGNQL PMKFSSGAST SNLEGTERSV KIISAAREDW VPQQRQPESI PKSLLEIKVK RDELSLDIGK SSHKEWIQQY LEREEEEDEP
0201: NSQAASIEYH QAGLGDVEAK QKGDEKSFHD EILLSGLQEE STTKMTEEIA CNSAFTISLE LKASDDQQNP GQSKVVNLEA DEADHFKAVD SSVSLLEGHV
0301: NETDKKTEEV EELELDNLFS EDCSSSITLP AEISTQKNKK SLSQFAFRYN LGSIDDIWMK GDTGKIPKAV LQKLCQKLGW EPPKYSKLSG KEDKFLYAVS
0401: ILRSASGRGK SRNAGGLISI QLPNGGESFK SVEDAQNKVA SYALCQLFPE LPLCQMLMEP YSSFVSMWHN DELPANLVEN EDARRAGFVD SLLNADSSLP
0501: MSSVDAKRIS VGEKLVKAEN LEVTIDCPIE TAKVIPSGMY SCYPEQRESI FLKKELENKM KQPEYMKILE ARDSLPISKL KSNILQLLVE NDVIVVCGET
0601: GCGKTTQVPQ FILDDMIQSG LGGYCNIVCT QPRRLAAISV AERVSDERCE PSPGCDGSLV GYQVRLDVAR NEKTKLLFCT TGILLRKLAV NKDLAGITHV
0701: IVDEVHERSL LGDFLLIVLK NLIEKQSDTA RQKLKVVLMS ATVDSSLFSR YFGNCPVISA EGRTHPVSTY FLEDVYERLD YCLALDAAAS GTSMTGYRGK
0801: LKGSIVDNHR GKKNIVLSSW GDESLLSEDY VNPHYIPDQY ASYSDRTRQN LKRLNEDVID FDLLEDLICF IDENYPPGAI LVFLPGVAEI DLLVDKLTAS
0901: YQFGGILLDW ILPLHSSLSA FEQKKVFLTP PQNIRKVIVA TDIAETSITI DDVIYVVDAG KHKEKRYNAQ KKMSSMVEDW ISKANAKQRR GRAGRVKPGI
1001: CFCLYTCHRY EVLMRPFQVP EMVRMPLTEL CLQIKSLSLG DTKSFLLQAI EPPREDVISS AIDLLYKVGA LDGNEELSPL GYHLAKLPVD VLIGKMMLYG
1101: AIFGCLSPIL SLAAFLSYKF PFVYPKDEKQ NVERAKSALL GNSLNNESAY EESYKQSDHL LMVVAYNKWA RILHQDGTRS AQQFCRSFFL NSSVMYTIRD
1201: MRVQFGGLLA DIGLVDLPKH LLSYERRKDK LDSWFSDMSQ PFNLNANHPS IIKSIICAGL YPNVAATTEG IVNSALAGTT LLASGLPLKD QTVLYDGKRE
1301: VHIHPSSVNH NVKHFRYPFL VFLEKVETSK VFLRDSSIIS PYSLFLFGGS MSIQHQAGLI TIDGWLKLTA PAQTAVLFKE LRLTLHAVLK ELIRKPETAT
1401: FSKNEVVKSI VQLLLEEDKD QTS
0001: MAPKKKPQKQ SNKAASSSSS SKSNYQKPSS GPKLQISAEN EDRLRRLLLN SGRSGPSIPA PISNSLSKAQ KTKKLNNVYE KLSCEGFVDD QIELALSSLR
0101: DGATFEAALD WLCLNLPSHE LPVKFSTGAS RFPSTGGSVG VISTSRDDWN DSTDSSVRVE EEEPAVFVRV KGKQDEEDTL SSDKSSQADW IRQYMMRQEE
0201: EELECWEDEV DGIDPRNKVS GPRPFDVIAK EYYSARSDAI KAKEKRDKRG QEQAGLAIRK LKQEISDLGL SEAMLESEFQ REHAFESATE QESTCPISDN
0301: LHESVDADDV SVQMLDNLTL NTNPAESYES EEIQTKALPS SSSGQDFVAS DEDSEDVELG DTFFEEIPPS EISPHELLEL QKEEKMRELR SEKNLGKLDG
0401: IWKKGEAQKI PKAFLHQLCQ RSGWEAPKFN KETGEGRNFS YTVSILRKAS GRGKNRQAGG LVTLQLPPKD ENFESIEDAQ NKVAAFALHK LFSDLPVHFA
0501: ITEPYASLVL IWKQEELLCT TIQSTEEDRR ANFVDKLLEE DSFSLTTSSS SFENSLPLVD SYVKDKDDLG VVKSNNRAKR DSYIEAECLS LQRKQENKKR
0601: TQKYKDMLKT RTALPISEVK NGILQHLKEK DVLVVCGETG SGKTTQVPQF ILDDMIDSGH GGYCNIICTQ PRRIAAISVA QRVADERCES SPGLDDSLVG
0701: YQVRLESARS DKTRLLFCTT GILLRKLAGD RTLNDVTHII VDEVHERSLL GDFLLIILKS LIEKQSCDNT SRKLKVILMS ATVDADLFSR YFGHCPVITA
0801: QGRTHPVTTH FLEEIYESIN YLLAPDSPAA LRSDTSIKDK LGSVNDRRGK KNLVLAGWGD DYLLSEDCLN PFYVSSNYNS YSDQTQQNLK RLNEDRIDYE
0901: LLEELICHID DTCEEGAILI FLPGVAEIYM LLDMLAASYR FRGPAADWLL PLHSSIASSE QRKVFLRPPK GLRKVIAATN IAETSITIDD VVYVIDSGKH
1001: KENRYNPQKK LSSMVEDWIS QANARQRTGR AGRVKPGICF SLYTRYRFEK LMRPYQVPEM LRMPLVELCL QIKLLGLGHI KPFLSRALEP PSEGAMTSAI
1101: SLLHEVGAVE GDEELTPLGH HLAKLPVDVL IGKMLLYGGI FGCLSPILSI AAFLSYKSPF IYPKDEKQNV DRVKLALLSD NGVSSSDLNN NDRQSDHLLM
1201: MVAYDKWVKI LQERGMKAAQ RFCESKFLSS SVMRMIRDMR VQFGTLLADI GLINLPKTGE FSGRKKENLD VWFSDPTQPF NMYSQQPEVV KAILCAGLYP
1301: NIAANDKGIT ETTFNSLTKQ GNQTKSYSAW YDGRREVHIH PSSINSNFKA FQNPFLVFLE KVETNKVYLR DTTIVSPFSI LLFGGSINVH HQSGSVTIDG
1401: WLKVAAPAQT AVLFKELRLT LHSILKDLIR KPEKSGIVHN EVVKSMVHLL IEEGKPQHK
0101: DGATFEAALD WLCLNLPSHE LPVKFSTGAS RFPSTGGSVG VISTSRDDWN DSTDSSVRVE EEEPAVFVRV KGKQDEEDTL SSDKSSQADW IRQYMMRQEE
0201: EELECWEDEV DGIDPRNKVS GPRPFDVIAK EYYSARSDAI KAKEKRDKRG QEQAGLAIRK LKQEISDLGL SEAMLESEFQ REHAFESATE QESTCPISDN
0301: LHESVDADDV SVQMLDNLTL NTNPAESYES EEIQTKALPS SSSGQDFVAS DEDSEDVELG DTFFEEIPPS EISPHELLEL QKEEKMRELR SEKNLGKLDG
0401: IWKKGEAQKI PKAFLHQLCQ RSGWEAPKFN KETGEGRNFS YTVSILRKAS GRGKNRQAGG LVTLQLPPKD ENFESIEDAQ NKVAAFALHK LFSDLPVHFA
0501: ITEPYASLVL IWKQEELLCT TIQSTEEDRR ANFVDKLLEE DSFSLTTSSS SFENSLPLVD SYVKDKDDLG VVKSNNRAKR DSYIEAECLS LQRKQENKKR
0601: TQKYKDMLKT RTALPISEVK NGILQHLKEK DVLVVCGETG SGKTTQVPQF ILDDMIDSGH GGYCNIICTQ PRRIAAISVA QRVADERCES SPGLDDSLVG
0701: YQVRLESARS DKTRLLFCTT GILLRKLAGD RTLNDVTHII VDEVHERSLL GDFLLIILKS LIEKQSCDNT SRKLKVILMS ATVDADLFSR YFGHCPVITA
0801: QGRTHPVTTH FLEEIYESIN YLLAPDSPAA LRSDTSIKDK LGSVNDRRGK KNLVLAGWGD DYLLSEDCLN PFYVSSNYNS YSDQTQQNLK RLNEDRIDYE
0901: LLEELICHID DTCEEGAILI FLPGVAEIYM LLDMLAASYR FRGPAADWLL PLHSSIASSE QRKVFLRPPK GLRKVIAATN IAETSITIDD VVYVIDSGKH
1001: KENRYNPQKK LSSMVEDWIS QANARQRTGR AGRVKPGICF SLYTRYRFEK LMRPYQVPEM LRMPLVELCL QIKLLGLGHI KPFLSRALEP PSEGAMTSAI
1101: SLLHEVGAVE GDEELTPLGH HLAKLPVDVL IGKMLLYGGI FGCLSPILSI AAFLSYKSPF IYPKDEKQNV DRVKLALLSD NGVSSSDLNN NDRQSDHLLM
1201: MVAYDKWVKI LQERGMKAAQ RFCESKFLSS SVMRMIRDMR VQFGTLLADI GLINLPKTGE FSGRKKENLD VWFSDPTQPF NMYSQQPEVV KAILCAGLYP
1301: NIAANDKGIT ETTFNSLTKQ GNQTKSYSAW YDGRREVHIH PSSINSNFKA FQNPFLVFLE KVETNKVYLR DTTIVSPFSI LLFGGSINVH HQSGSVTIDG
1401: WLKVAAPAQT AVLFKELRLT LHSILKDLIR KPEKSGIVHN EVVKSMVHLL IEEGKPQHK
Arabidopsis Description
DExH-box ATP-dependent RNA helicase DExH7, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4I9Q5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.