Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 1
- nucleus 2
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG26332 | Sorghum | nucleus, plastid | 95.37 | 95.23 |
| Os04t0432200-00 | Rice | extracellular | 4.56 | 89.04 |
| TraesCS2A01G304100.1 | Wheat | nucleus, plastid | 83.29 | 83.0 |
| TraesCS2B01G320800.1 | Wheat | nucleus, plastid | 83.01 | 82.77 |
| TraesCS2D01G302700.1 | Wheat | plastid | 82.58 | 82.3 |
| GSMUA_Achr6P17860_001 | Banana | nucleus | 62.15 | 62.19 |
| VIT_12s0035g00800.t01 | Wine grape | nucleus | 53.16 | 55.3 |
| Solyc01g103690.2.1 | Tomato | nucleus | 54.78 | 54.24 |
| KRH01863 | Soybean | nucleus | 54.42 | 53.89 |
| AT1G58060.1 | Thale cress | nucleus | 53.79 | 52.5 |
| CDY39917 | Canola | nucleus | 51.9 | 52.3 |
| CDY29164 | Canola | nucleus | 52.04 | 52.04 |
| Bra027890.1-P | Field mustard | nucleus | 46.91 | 50.23 |
| AT1G58050.1 | Thale cress | nucleus | 48.88 | 49.12 |
| CDY63687 | Canola | nucleus, plastid | 33.57 | 43.06 |
| Zm00001d045376_P001 | Maize | cytosol | 9.55 | 41.21 |
| Zm00001d032735_P001 | Maize | plastid | 25.84 | 35.59 |
| Zm00001d019056_P001 | Maize | nucleus | 4.99 | 35.5 |
| Zm00001d028923_P002 | Maize | nucleus | 15.45 | 30.51 |
| Zm00001d034013_P002 | Maize | golgi, mitochondrion, vacuole | 25.07 | 29.77 |
| Zm00001d011963_P002 | Maize | plasma membrane | 14.96 | 29.54 |
| Zm00001d049980_P001 | Maize | plasma membrane | 13.9 | 28.37 |
| Zm00001d045147_P015 | Maize | nucleus | 13.83 | 27.9 |
| Zm00001d047601_P006 | Maize | nucleus | 15.1 | 27.81 |
| Zm00001d040082_P003 | Maize | plastid | 24.65 | 24.95 |
| Zm00001d012661_P002 | Maize | mitochondrion, plastid | 21.7 | 23.77 |
| Zm00001d039380_P001 | Maize | nucleus | 13.48 | 20.27 |
| Zm00001d015893_P001 | Maize | nucleus, plasma membrane | 17.35 | 19.98 |
| Zm00001d031581_P002 | Maize | nucleus | 17.13 | 18.43 |
| Zm00001d006459_P003 | Maize | plastid | 17.35 | 18.35 |
| Zm00001d017967_P003 | Maize | nucleus | 15.31 | 17.04 |
| Zm00001d022176_P002 | Maize | nucleus | 15.87 | 12.9 |
Protein Annotations
| Gene3D:1.20.120.1080 | EntrezGene:103646444 | Gene3D:3.30.160.20 | Gene3D:3.40.50.300 | MapMan:35.1 | UniProt:A0A1D6EAL8 |
| ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | InterPro:DUF1605 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003824 | GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0016787 | InterPro:Helicase-assoc_dom |
| InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | ProteinID:ONM17402.1 | InterPro:P-loop_NTPase |
| PFAM:PF00270 | PFAM:PF00271 | PFAM:PF04408 | PFAM:PF07717 | PFscan:PS51192 | PFscan:PS51194 |
| PANTHER:PTHR18934 | PANTHER:PTHR18934:SF190 | SMART:SM00487 | SMART:SM00490 | SMART:SM00847 | SUPFAM:SSF52540 |
| SUPFAM:SSF54768 | UniParc:UPI0004DE846F | EnsemblPlantsGene:Zm00001d003655 | EnsemblPlants:Zm00001d003655_P006 | EnsemblPlants:Zm00001d003655_T006 | SEG:seg |
Description
DExH-box ATP-dependent RNA helicase DExH7 chloroplastic
Coordinates
chr2:+:52478314..52538954
Molecular Weight (calculated)
159333.0 Da
IEP (calculated)
6.659
GRAVY (calculated)
-0.403
Length
1424 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAPKKKQPDS KQRQKPKSSS SSSAATAAPR LQISSENERR LRRLLLNSSA PSPSPANVSE VRGESREQKA RRLRGVYDKL ALEGFSSAQI EQALSAIPDS
0101: ATFESALDWL CFNLPGDELP LKFSSAGDST MSSLTGAEGS VKVLSTAKDN WVPQSREPEE VKVSTEGLEV RIGGRRDENV SLDDGRLSQA AWIRQYMEQQ
0201: EEEEDANSND SSTWEDHCLQ SFEVVEAKPS RRKSKAAKKN SKHGNLKEQI SYPTNSVSSN SETANVEGVQ NDLEASEERS ESLGNIDEGS DLKKEIPKDI
0301: DKTCAKEVDE EVIELDNMFF EDSSAWEAVA PEILKQQQIE KLSHDGYGHL IGNIDDIWKK GDSGKMPKAV LQKFCQKLGW EAPKYNKISE RDGKFVYSVN
0401: VLRGATGRGK SRKAGGLTII QLPKLHEEYG SVQEAQSRVA AFALYQFFAD LPLRQLLTEP YSSLILRWQE GELSSTSRVL VTEDRRRSGF VDMLLNIDAD
0501: TIPSSEIENS DTDVISMDSG NTEGSKSVNE KRQTTMTSCM GLKSAERAES AILKKQLEDK RKLPNYLKML EARASLPIAR QRQHFLQLLK ENDVVVVSGE
0601: TGCGKTTQVP QFILDDMIES ELGGSCNIVC TQPRRIAAIS VAERVSDERC EPSPGSNDSL VGYQVRLDSA RNERTKLLFC TTGILLRKLS GNRDLSDVTH
0701: VVVDEVHERT ILSDFLLIVL KNLVEKRSNQ QGRKLKVILM SATVDSSLFA RYFGECPVIS VEGRTHPVST HFLEDVYEKM EYCLALDSPA SGAYFAQHGE
0801: KWKHASSSVN NRRGKKNLVL SSWGDESTLS EGYVNPHYIS DYYRSYNERT NQNLKRLNED VIDFDLLEDL ICYIDENCPQ GAILVFLPGV AEIDLLIDRL
0901: SALVRFGGAS SDWILPLHSL LGPSDQRKVF QSPPDNFRKV IIATDIAETS ITIDDVVYVV DTGKHKENRY NPHKKMSSIV EDWISRANAK QRRGRAGRVK
1001: PGLCFCLYTR HRFENVMRPF QVPEMLRMPL TELCLQIKSL HLDDIKSFLL KAVEPPNEEA ISSAVDLLYK VGAFEGHEEL SPLGYHLAKL PVDVLIGKMM
1101: LYGAIFGCLS PILSVAAFLS YKSPFLSPKD EKQNVEKAKA TLLNENLDGS SSVTDNKQSD HLLMVIAYDK WSRILLQNGD KSARQFCHSF YLNSTVMHMI
1201: RDMRLQFGTL LADIGLIDLP KDTLRHKVGS RKNNLESWFS NMSLPFNAYA RCTSVIKSVM CAGLYPNVAA SLEGVDPGAL GGRKPSDVLF SKDRPRWYDG
1301: RREVHIHPSS VNHSLKAVQY PFLVFLEKVE TTKVFLRDTS VVSPYSLLLF GGSMVIQHQT GVVVIDGWLR LSAAAQTAVL FKQLRMTLDA VLKELTRKPE
1401: MATFVDNEVV RSIIHLLLEE DKAR
0101: ATFESALDWL CFNLPGDELP LKFSSAGDST MSSLTGAEGS VKVLSTAKDN WVPQSREPEE VKVSTEGLEV RIGGRRDENV SLDDGRLSQA AWIRQYMEQQ
0201: EEEEDANSND SSTWEDHCLQ SFEVVEAKPS RRKSKAAKKN SKHGNLKEQI SYPTNSVSSN SETANVEGVQ NDLEASEERS ESLGNIDEGS DLKKEIPKDI
0301: DKTCAKEVDE EVIELDNMFF EDSSAWEAVA PEILKQQQIE KLSHDGYGHL IGNIDDIWKK GDSGKMPKAV LQKFCQKLGW EAPKYNKISE RDGKFVYSVN
0401: VLRGATGRGK SRKAGGLTII QLPKLHEEYG SVQEAQSRVA AFALYQFFAD LPLRQLLTEP YSSLILRWQE GELSSTSRVL VTEDRRRSGF VDMLLNIDAD
0501: TIPSSEIENS DTDVISMDSG NTEGSKSVNE KRQTTMTSCM GLKSAERAES AILKKQLEDK RKLPNYLKML EARASLPIAR QRQHFLQLLK ENDVVVVSGE
0601: TGCGKTTQVP QFILDDMIES ELGGSCNIVC TQPRRIAAIS VAERVSDERC EPSPGSNDSL VGYQVRLDSA RNERTKLLFC TTGILLRKLS GNRDLSDVTH
0701: VVVDEVHERT ILSDFLLIVL KNLVEKRSNQ QGRKLKVILM SATVDSSLFA RYFGECPVIS VEGRTHPVST HFLEDVYEKM EYCLALDSPA SGAYFAQHGE
0801: KWKHASSSVN NRRGKKNLVL SSWGDESTLS EGYVNPHYIS DYYRSYNERT NQNLKRLNED VIDFDLLEDL ICYIDENCPQ GAILVFLPGV AEIDLLIDRL
0901: SALVRFGGAS SDWILPLHSL LGPSDQRKVF QSPPDNFRKV IIATDIAETS ITIDDVVYVV DTGKHKENRY NPHKKMSSIV EDWISRANAK QRRGRAGRVK
1001: PGLCFCLYTR HRFENVMRPF QVPEMLRMPL TELCLQIKSL HLDDIKSFLL KAVEPPNEEA ISSAVDLLYK VGAFEGHEEL SPLGYHLAKL PVDVLIGKMM
1101: LYGAIFGCLS PILSVAAFLS YKSPFLSPKD EKQNVEKAKA TLLNENLDGS SSVTDNKQSD HLLMVIAYDK WSRILLQNGD KSARQFCHSF YLNSTVMHMI
1201: RDMRLQFGTL LADIGLIDLP KDTLRHKVGS RKNNLESWFS NMSLPFNAYA RCTSVIKSVM CAGLYPNVAA SLEGVDPGAL GGRKPSDVLF SKDRPRWYDG
1301: RREVHIHPSS VNHSLKAVQY PFLVFLEKVE TTKVFLRDTS VVSPYSLLLF GGSMVIQHQT GVVVIDGWLR LSAAAQTAVL FKQLRMTLDA VLKELTRKPE
1401: MATFVDNEVV RSIIHLLLEE DKAR
0001: MAPTKKPQKN KQSKNEIASS LIPNSGHKKP SKAPKLLISP ENEDRLRRLL LNFRRTPSPV TATLSVTQKR KKLNNLYENL SCEGFLDNQI ELVLSSLRDG
0101: ATLETALDWL CLNLPSHELP VNFSNGASRF PSTGRSVAVI SKSKKDWNVS AESSVQEVKE VPESEVLVRV KSKRDEEEED SLSSCQPSQA DWIHQYMKRL
0201: EEEELESSDD ERDKVSGPRS FEVIAKEYCV ERYNAIKAKR KGDKSGQSQA GLAICKLKEE MNALGPSEAI LESEFQRDRQ DCEGAREKEV ASSVLDDVHE
0301: SVNADAFFFQ LFDDLTLDTN PVGSCKSEEQ ESVVSNDSLD DLDLGDLFDE DVPPYVPSPH ELLELQKKEI MRELCNEKHL TKLNGIWKKG EAQKIPKALL
0401: HQLCQRSGWI APKFNKVTGE GRNFSYTTSV MRKSSGFGKS RQAGGLVTIQ LPHQVEDFES IQDAQNRVAA FALHKLFSDL PVHFAITEPY ASLVLIWKQE
0501: ESLGITSREE QRREKFVESL LEADNFSLTT TSRGIHSALP MVDSCVKEND DLDVVKSNHR ARRNSSMAAE CSSLKQKQEN KKKMQKYKDM LKTRAALPIS
0601: EVKKDILQKL KEKDVLVVCG ETGSGKTTQV PQFILDDMID SGHGGYCNII CTQPRAITVA QRVADERCEP PPGFDNSVVA YQVRHQNARS DKTRLLFCTT
0701: GILLRKLVGD TTLKDVTHII VDEVHERSLM GDFLLIILKS LIEKQSWDNA LPKLKVILMS ATVDAHQFSR YFGQCPIITA QGRTHPVTTY FLEDIYERTK
0801: YLLASDSPAA LSSDTSITDK LGSVNVPRGK KNLMLAGWGD SYLVSEDSLN TSYDSIKYIA SAVVDYDLLE ELICHIDDTC EEGAILVFLP GMSEINMLLN
0901: RLAASYRFRG ASGDWLLPLH SSIASTEQKK VFLRPPKGIR KVIIATNIAE TSITIEDVVY VIDSGKHKEN RYNPHKKLSS MVEDWVSKAN ARQRMGRAGR
1001: VKPGHCFSLY TRHRFEKLMR PYQVPEMLRV PLVELCLHIK LLGLGQIKPF LSKALEPPSE SAINSAILLL HKVGALEGDE ELTPLGHHLA KLPVDLLIGK
1101: MLLYGGIFGC LSPILSIAAF LSCCKSPFVY AKDEQNVDRV KLALLSDKLE SSSNLNNNDR QSDHLLMVVA YEKWVRILHE QGFKAAESFC ESKFLNSSVM
1201: RMMRERRVEF GMLLADIGLI NLPKGKGRRK ENFDVWFSDK TQPFNMYSQE PEVVKAILCA GLCPNIAEGL VNRLTKPAEE TQRYAVWHDG KREVHIHRNS
1301: INKNCKAFQY PFIVFLEKLE TKKVVYLQDT TVVSPFSILL FGGSINVHHQ SGSVTIDGWL KLTAPAQTAV LFKELRLTLH SILKDLIRKP EKSGIVHNEV
1401: VKSMVHLLIE EGKPQHT
0101: ATLETALDWL CLNLPSHELP VNFSNGASRF PSTGRSVAVI SKSKKDWNVS AESSVQEVKE VPESEVLVRV KSKRDEEEED SLSSCQPSQA DWIHQYMKRL
0201: EEEELESSDD ERDKVSGPRS FEVIAKEYCV ERYNAIKAKR KGDKSGQSQA GLAICKLKEE MNALGPSEAI LESEFQRDRQ DCEGAREKEV ASSVLDDVHE
0301: SVNADAFFFQ LFDDLTLDTN PVGSCKSEEQ ESVVSNDSLD DLDLGDLFDE DVPPYVPSPH ELLELQKKEI MRELCNEKHL TKLNGIWKKG EAQKIPKALL
0401: HQLCQRSGWI APKFNKVTGE GRNFSYTTSV MRKSSGFGKS RQAGGLVTIQ LPHQVEDFES IQDAQNRVAA FALHKLFSDL PVHFAITEPY ASLVLIWKQE
0501: ESLGITSREE QRREKFVESL LEADNFSLTT TSRGIHSALP MVDSCVKEND DLDVVKSNHR ARRNSSMAAE CSSLKQKQEN KKKMQKYKDM LKTRAALPIS
0601: EVKKDILQKL KEKDVLVVCG ETGSGKTTQV PQFILDDMID SGHGGYCNII CTQPRAITVA QRVADERCEP PPGFDNSVVA YQVRHQNARS DKTRLLFCTT
0701: GILLRKLVGD TTLKDVTHII VDEVHERSLM GDFLLIILKS LIEKQSWDNA LPKLKVILMS ATVDAHQFSR YFGQCPIITA QGRTHPVTTY FLEDIYERTK
0801: YLLASDSPAA LSSDTSITDK LGSVNVPRGK KNLMLAGWGD SYLVSEDSLN TSYDSIKYIA SAVVDYDLLE ELICHIDDTC EEGAILVFLP GMSEINMLLN
0901: RLAASYRFRG ASGDWLLPLH SSIASTEQKK VFLRPPKGIR KVIIATNIAE TSITIEDVVY VIDSGKHKEN RYNPHKKLSS MVEDWVSKAN ARQRMGRAGR
1001: VKPGHCFSLY TRHRFEKLMR PYQVPEMLRV PLVELCLHIK LLGLGQIKPF LSKALEPPSE SAINSAILLL HKVGALEGDE ELTPLGHHLA KLPVDLLIGK
1101: MLLYGGIFGC LSPILSIAAF LSCCKSPFVY AKDEQNVDRV KLALLSDKLE SSSNLNNNDR QSDHLLMVVA YEKWVRILHE QGFKAAESFC ESKFLNSSVM
1201: RMMRERRVEF GMLLADIGLI NLPKGKGRRK ENFDVWFSDK TQPFNMYSQE PEVVKAILCA GLCPNIAEGL VNRLTKPAEE TQRYAVWHDG KREVHIHRNS
1301: INKNCKAFQY PFIVFLEKLE TKKVVYLQDT TVVSPFSILL FGGSINVHHQ SGSVTIDGWL KLTAPAQTAV LFKELRLTLH SILKDLIRKP EKSGIVHNEV
1401: VKSMVHLLIE EGKPQHT
Arabidopsis Description
DExH-box ATP-dependent RNA helicase DExH4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C6G0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.