Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d045376_P001 | Maize | cytosol | 80.5 | 48.79 |
| Zm00001d032735_P001 | Maize | plastid | 96.0 | 18.57 |
| KXG38358 | Sorghum | nucleus | 93.0 | 17.95 |
| HORVU1Hr1G039880.1 | Barley | nucleus | 84.0 | 17.78 |
| PGSC0003DMT400055058 | Potato | nucleus | 75.0 | 17.56 |
| Os10t0471350-01 | Rice | nucleus | 85.0 | 17.03 |
| GSMUA_Achr8P12540_001 | Banana | nucleus | 46.5 | 16.85 |
| TraesCS1D01G148100.2 | Wheat | nucleus | 84.0 | 16.33 |
| TraesCS1A01G151100.1 | Wheat | nucleus | 84.0 | 16.33 |
| TraesCS1B01G168700.3 | Wheat | nucleus | 83.5 | 16.2 |
| KRH72171 | Soybean | nucleus | 71.0 | 15.78 |
| Solyc01g006970.2.1 | Tomato | nucleus | 76.0 | 14.74 |
| Bra023043.1-P | Field mustard | nucleus | 70.0 | 14.07 |
| VIT_08s0032g01230.t01 | Wine grape | nucleus, plastid | 72.0 | 14.05 |
| AT2G35920.3 | Thale cress | plastid | 71.0 | 13.83 |
| KRH32860 | Soybean | mitochondrion, nucleus, plastid | 70.5 | 13.69 |
| CDX79642 | Canola | nucleus, vacuole | 70.5 | 13.62 |
| CDX84588 | Canola | plastid, vacuole | 69.5 | 13.43 |
| Zm00001d034013_P002 | Maize | golgi, mitochondrion, vacuole | 45.0 | 7.51 |
| Zm00001d028923_P002 | Maize | nucleus | 25.0 | 6.93 |
| Zm00001d045147_P015 | Maize | nucleus | 24.0 | 6.8 |
| Zm00001d047601_P006 | Maize | nucleus | 25.5 | 6.6 |
| Zm00001d011963_P002 | Maize | plasma membrane | 22.5 | 6.24 |
| Zm00001d049980_P001 | Maize | plasma membrane | 21.5 | 6.16 |
| Zm00001d040082_P003 | Maize | plastid | 39.0 | 5.54 |
| Zm00001d012661_P002 | Maize | mitochondrion, plastid | 34.5 | 5.31 |
| Zm00001d003655_P006 | Maize | nucleus, plastid | 35.5 | 4.99 |
| Zm00001d015893_P001 | Maize | nucleus, plasma membrane | 24.0 | 3.88 |
| GSMUA_Achr8P12550_001 | Banana | cytosol | 8.0 | 3.52 |
| Zm00001d006459_P003 | Maize | plastid | 23.0 | 3.42 |
| Zm00001d031581_P002 | Maize | nucleus | 22.5 | 3.4 |
| Zm00001d039380_P001 | Maize | nucleus | 14.0 | 2.96 |
| Zm00001d017967_P003 | Maize | nucleus | 17.5 | 2.74 |
| Zm00001d022176_P002 | Maize | nucleus | 21.5 | 2.45 |
Protein Annotations
| EnsemblPlants:Zm00001d019056_P001 | EnsemblPlants:Zm00001d019056_T001 | EnsemblPlantsGene:Zm00001d019056 | Gene3D:3.40.50.300 | InterPro:P-loop_NTPase | PANTHER:PTHR18934 |
| PANTHER:PTHR18934:SF191 | ProteinID:ONM52037.1 | SEG:seg | SUPFAM:SSF52540 | UniParc:UPI0008447E02 | UniProt:A0A1D6HUQ7 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr7:-:14364536..14365972
Molecular Weight (calculated)
22832.4 Da
IEP (calculated)
4.620
GRAVY (calculated)
-0.091
Length
200 amino acids
Sequence
(BLAST)
(BLAST)
001: MNEDFLIIIL RDLLPRRPDL RLVLMSATIN AELFSKYFGD APVMHILGFT FPVAELFLED VLEKTCYRIN SERDNFAGSS RRKRFSSVKS DPLSDVFEDI
101: DITKEYGNYS SSTRQSLEAW SAAELDLSLV ESTIEYICHY EAEGAILAFL IGWDEILKLL DKIKGNNFLG SPNRFLVLPL HGSMPTVNQR EIFDRPPANM
101: DITKEYGNYS SSTRQSLEAW SAAELDLSLV ESTIEYICHY EAEGAILAFL IGWDEILKLL DKIKGNNFLG SPNRFLVLPL HGSMPTVNQR EIFDRPPANM
0001: MQLYSAIFRG HIRPNAVVGA ASMFIQHNSI QLHRSPKLLL RPSSVVRSLH CRRSGGLVTH SQRSRVLCVK AARGDASSST LGIEWRAANL PYFQRQNSGY
0101: GRIAYNDYES SDESDRDVGS SQSQQMAGST LDNIDQWRFK LTMLLRNKED QEVVSRERKD RRDFDHISAL ATRMGLHSRQ YSKIVVISKA PLPNYRPDLD
0201: DKRPQREVVL PFGLQSEVDA HLHSFLDQKK TLIPEMPRQN SSESLANGYG NYETPETVMQ NSLARERILR PRSLQLKSKQ QQWVDSPEGQ KMVGFRKTLP
0301: AYKEKDALLK AIAANQVVVV SGETGCGKTT QLPQYILESE IEAARGATCS IICTQPRRIS AISVSERVAA ERGEQIGESV GYKVRLEGMR GRDTRLLFCT
0401: TGVLLRRLLV DRSLKGVTHV VVDEIHERGM NEDFLLIVLK DLLPRRPDLK LILMSATLNA ELFSSYFGGA PAMHIPGFTY PVRAHFLEDY LETSGYRLTT
0501: YNQIDDYGEE KTWKMQKQAQ FKKRKSLISS AVEDALEAAD FKGYNFRTRD SLSCWSPDSI GFNLIENVLC HIVKGERPGA VLVFMTGWDD INSLKNQLEA
0601: HSLLGDPNKV LLLACHGSMA SSEQRLIFDR PPEGIRKIVL ATNMAETSIT INDVVYVIDC GKAKETSYDA LNNTPCLLPS WISKAAARQR RGRAGRVMPG
0701: ECYHLYPRCV YEAFADYQQP ELLRTPLQSL CLQIKSLGLG SISEFLSRAL QPPEALSVQN AVEYLKIIGA LDDDENLTPL GKNLSMLPVE PKLGKMLILG
0801: AIFNCLDPVM TVVAGLSVRD PFLMPFDKKD LAETARSKFS GRDYSDHLTL VRAYNGWKDA ERTHSGYDYC WKNFLSSQTL KAMDSMRKQF FNLLKEASLI
0901: DNIEGCSKLS HDEHLVRAII CAGMFPGVCS VVNKEKSITL KTMEDGQVLL YSSSVNGNVP MIPFPWLVFN DKVKVNSVFL RDSTAVSDSV LLLFGDKISS
1001: GGFDGHLKML GGYLEFFMKP TLAYTYLSLK RELDELIQNK LVNPKLDIQL YDKLMTAIRL LVSEDQCEGR FVYGRKALSP TPAKKLKDVG AQLQNSGGEN
1101: NKNQLQTLLA RAGHGSPVYK TRQLKNNQFR SMVTFNGLDF MGKPCGSKKN AEKDAAHEAL LWLQGESKSS LNDLNHMSML LKKNKSKNHA KASTKWG
0101: GRIAYNDYES SDESDRDVGS SQSQQMAGST LDNIDQWRFK LTMLLRNKED QEVVSRERKD RRDFDHISAL ATRMGLHSRQ YSKIVVISKA PLPNYRPDLD
0201: DKRPQREVVL PFGLQSEVDA HLHSFLDQKK TLIPEMPRQN SSESLANGYG NYETPETVMQ NSLARERILR PRSLQLKSKQ QQWVDSPEGQ KMVGFRKTLP
0301: AYKEKDALLK AIAANQVVVV SGETGCGKTT QLPQYILESE IEAARGATCS IICTQPRRIS AISVSERVAA ERGEQIGESV GYKVRLEGMR GRDTRLLFCT
0401: TGVLLRRLLV DRSLKGVTHV VVDEIHERGM NEDFLLIVLK DLLPRRPDLK LILMSATLNA ELFSSYFGGA PAMHIPGFTY PVRAHFLEDY LETSGYRLTT
0501: YNQIDDYGEE KTWKMQKQAQ FKKRKSLISS AVEDALEAAD FKGYNFRTRD SLSCWSPDSI GFNLIENVLC HIVKGERPGA VLVFMTGWDD INSLKNQLEA
0601: HSLLGDPNKV LLLACHGSMA SSEQRLIFDR PPEGIRKIVL ATNMAETSIT INDVVYVIDC GKAKETSYDA LNNTPCLLPS WISKAAARQR RGRAGRVMPG
0701: ECYHLYPRCV YEAFADYQQP ELLRTPLQSL CLQIKSLGLG SISEFLSRAL QPPEALSVQN AVEYLKIIGA LDDDENLTPL GKNLSMLPVE PKLGKMLILG
0801: AIFNCLDPVM TVVAGLSVRD PFLMPFDKKD LAETARSKFS GRDYSDHLTL VRAYNGWKDA ERTHSGYDYC WKNFLSSQTL KAMDSMRKQF FNLLKEASLI
0901: DNIEGCSKLS HDEHLVRAII CAGMFPGVCS VVNKEKSITL KTMEDGQVLL YSSSVNGNVP MIPFPWLVFN DKVKVNSVFL RDSTAVSDSV LLLFGDKISS
1001: GGFDGHLKML GGYLEFFMKP TLAYTYLSLK RELDELIQNK LVNPKLDIQL YDKLMTAIRL LVSEDQCEGR FVYGRKALSP TPAKKLKDVG AQLQNSGGEN
1101: NKNQLQTLLA RAGHGSPVYK TRQLKNNQFR SMVTFNGLDF MGKPCGSKKN AEKDAAHEAL LWLQGESKSS LNDLNHMSML LKKNKSKNHA KASTKWG
Arabidopsis Description
DEA(D/H)-box RNA helicase family protein [Source:UniProtKB/TrEMBL;Acc:F4HYJ6]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.