Factsheet for Solyc01g006970.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
mitochondrion 3
nucleus 3

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400055058	Potato	nucleus	80.99	97.78
GSMUA_Achr8P12550_001	Banana	cytosol	37.83	85.71
Zm00001d045376_P001	Maize	cytosol	27.16	84.85
VIT_08s0032g01230.t01	Wine grape	nucleus, plastid	80.99	81.46
KRH72171	Soybean	nucleus	68.67	78.67
KRH32860	Soybean	mitochondrion, nucleus, plastid	77.3	77.38
Bra023043.1-P	Field mustard	nucleus	73.52	76.18
Zm00001d019056_P001	Maize	nucleus	14.74	76.0
HORVU1Hr1G039880.1	Barley	nucleus	69.64	75.98
Os10t0471350-01	Rice	nucleus	72.94	75.35
AT2G35920.3	Thale cress	plastid	73.81	74.1
CDX79642	Canola	nucleus, vacuole	74.2	73.91
CDX84588	Canola	plastid, vacuole	74.1	73.82
TraesCS1D01G148100.2	Wheat	nucleus	73.13	73.28
TraesCS1A01G151100.1	Wheat	nucleus	73.13	73.28
TraesCS1B01G168700.3	Wheat	nucleus	73.13	73.13
Zm00001d032735_P001	Maize	plastid	73.33	73.11
KXG38358	Sorghum	nucleus	73.23	72.88
GSMUA_Achr8P12540_001	Banana	nucleus	32.78	61.23
Solyc01g006710.2.1	Tomato	mitochondrion	45.49	40.29
Solyc03g118920.2.1	Tomato	mitochondrion, nucleus	44.13	37.89
Solyc04g007510.2.1	Tomato	plastid	41.9	37.44
Solyc01g079250.2.1	Tomato	nucleus	23.28	33.2
Solyc09g008120.2.1	Tomato	nucleus	21.14	30.66
Solyc05g015040.2.1	Tomato	nucleus	20.76	30.57
Solyc09g097820.2.1	Tomato	nucleus	20.17	30.01
Solyc07g044930.2.1	Tomato	nucleus	33.07	28.44
Solyc12g089010.1.1	Tomato	nucleus	22.11	28.15
Solyc03g115390.2.1	Tomato	nucleus	23.57	26.73
Solyc12g017700.1.1	Tomato	nucleus	22.21	25.85
Solyc01g103690.2.1	Tomato	nucleus	35.89	25.73
Solyc01g110990.2.1	Tomato	nucleus	26.48	24.57
Solyc07g039550.2.1	Tomato	nucleus	26.58	23.03
Solyc10g076910.1.1	Tomato	nucleus	24.35	19.53
Solyc01g095710.2.1	Tomato	nucleus	20.95	16.11
Solyc11g010310.1.1	Tomato	nucleus	21.05	12.73
Solyc04g014210.2.1	Tomato	nucleus	19.98	11.91

Protein Annotations

Gene3D:1.20.120.1080	Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DNA/RNA_helicase_DEAH_CS	InterPro:DUF1605
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004004
GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016787	InterPro:Helicase-assoc_dom	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	UniProt:K4ASR3	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF04408
PFAM:PF07717	ScanProsite:PS00690	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR18934	PANTHER:PTHR18934:SF191
SMART:SM00487	SMART:SM00490	SMART:SM00847	SUPFAM:SSF52540	EnsemblPlantsGene:Solyc01g006970.2	EnsemblPlants:Solyc01g006970.2.1
UniParc:UPI00027626E5	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1:+:1541848..1551389

Molecular Weight (calculated)

115509.0 Da

IEP (calculated)

8.623

GRAVY (calculated)

-0.318

Length

1031 amino acids

Sequence
(BLAST)

0001: MSVRLLNHPH SSALLRFHFC NTSLRSSLQR SYSFSRSVMA YRPNYRGGRR GGGGRSGGGR GGGGRGGGGG RGGEQRWWDP VWRAERLRQQ AAEMEVMNEN
0101: EWWGKMEQFK RGGEQEMVIR RNFSRDDQQK LSDMAYQLEL YFHAYNKGKA LVASKVPLPS YRADLDERHG STQKEIRMST EIEERVGNLL SSSQDAVSAG
0201: TSSSTSGTSA KLLSKAVETT KPKLSIEDDI ATKRLNVELK QKQEKTRGSE KVKEMISFRE KLPAFKVKSE FMEAVANNQV LVVSGETGCG KTTQLPQFIL
0301: EEEISSLRGV DCNIICTQPR RISAISVAAR ISSERGDSLG DTVGYQIRLE AKRSAQTRLL FCTTGVLLRR LVQDPDLTGV SHLLVDEIHE RGMNEDFLLI
0401: ILRDLLPRRP DLRLILMSAT INAELFSKYF RDAPTIHIPG LTYPVAELFL EDVLEKTRYL IKSEADNFQG NSRRRMRQQD SKRDPLTDLF EDVDIGSHYK
0501: GYSMTTRQSL EAWSGSLLDL GLVEASIEYI CRCEGEGAIL VFLSGWDEIS KLLDKIKANN FLGDARKFLV LPLHGSMPTV NQREIFDRPP ANTRKIVLAT
0601: NIAESSITID DVVYVIDCGK AKETSYDALN KLACLLPSWI SKASAHQRRG RAGRVQPGVC YRLYPKLIHD AMAQYQLPEI LRTPLQELCL HIKSLQFGAI
0701: ESFLAKALQP PDALSVHNAI ELLKTIGALD DTEELTPLGR HLCTLPLDPN IGKMLLMGSI FQCLNPALTI AAALAHRDPF VLPINRKEEA DAAKRSFAGD
0801: SCSDHIALLK AFEGWKDAKR YGKERTFCWE NFLSPVTLQM MEDMRNQFID LLSDIGFVDK SRGAKAYNEY SNDLEMVCAI LCAGLYPNVV QCKRRGKRTA
0901: FYTKEVGKVD IHPASVNASV HLFPLPYLVY SEKVKTSSIY IRDSTNISDY SLLMFGGNLT PSKSGDGIEM LGGYLHFSAS KSVLDLIKKL RVELDKILKR
1001: KIEEPHFDVS VEGKGVVAAV VELLHSQDIR Y

Best Arabidopsis Sequence Match ( AT2G35920.1 )
(BLAST)

001: MPPHGPNSQG GRRGGGHSSG RRGGRGGGGR GGGGGGRGEQ RWWDPVWRAE RLRQQQAEME VLDENEWWNK IEQWKTGGEQ EMLIKRNFSR GDQQTLSDMA
101: LQMGLYFHAY NKGKALVVSK VPLPDYRADL DERHGSTQKE IKMSTETERK LGSLLKTTQE SGSSGASASA FNDQQDRTST LGLKRPDSAS KLPDSLEKEK
201: FSFALKERQE KLKATESVKA LKAFREKLPA FKMKEEFLNS VSQNQVLVVS GETGCGKTTQ LPQFILEEEI SSLRGADCNI ICTQPRRISA ISVASRISAE
301: RGESIGESVG YQIRLESKRS DQTRLLFCTT GVLLRRLIED PNLTNVSHLL VDEIHERGMN EDFLLIILRD LLPRRPDLRL ILMSATINAD MFSTYFGNSP
401: TMHIPGFTFP VAELFLEDVL EKSRYNIKSS DSGNYQGSSR GRRRESESKK DDLTTLFEDI DINSHYKSYS SATRNSLEAW SGAQIDVDLV EATIEHICRL
501: EGGGAILVFL TGWDEISKLL EKINMNNFLG DSSKFLVLPL HGSMPTVNQR EIFDRPPPNK RKIVLATNIA ESSITIDDVV YVVDCGKAKE TSYDALNKVA
601: CLLPSWISKA SAHQRRGRAG RVQAGVCYRL YPKVIYDAFP QYQLPEIIRT PLQELCLHIK SLQVGSIGSF LAKALQPPDA LAVENAIELL KTIGALNDVE
701: ELTPLGRHLC TLPVDPNIGK MLLIGAIFQC VNPALTIAAA LAYRSPFVLP LNRKEEADEA KRYFAGDSCS DHIALLKAYE GYRDAKRGGN EKDFCWQNFL
801: SPVTLRMMED MRNQFLDLLS DIGFVDKSKP NAYNQYSYDM EMISAVLCAG LYPNVVQCKR RGKRTAFYTK ELGKVDIHPG SVNARVNLFS LPYLVYSEKV
901: KTTSVYIRDS TNISDYALLM FGGNLIPSKT GEGIEMLGGY LHFSASKNIL ELIQRLRGEV DKLLNKKIED PSLDITVEGK GVVSAVVELL RSQKH

Arabidopsis Description

RNA helicase family protein [Source:TAIR;Acc:AT2G35920]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.