Factsheet for Solyc12g017700.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400005723	Potato	nucleus	87.58	94.4
Os08t0335000-00	Rice	cytosol, nucleus	32.05	77.38
Solyc03g115390.2.1	Tomato	nucleus	71.78	69.97
GSMUA_Achr4P23370_001	Banana	nucleus	56.88	67.2
Zm00001d049980_P001	Maize	plasma membrane	50.68	64.33
AT4G16680.2	Thale cress	nucleus	54.4	60.55
CDY60185	Canola	nucleus	54.74	56.46
CDY40514	Canola	nucleus	54.85	56.45
Bra038498.1-P	Field mustard	nucleus	56.32	55.38
EES02741	Sorghum	nucleus	65.24	55.26
KXG30390	Sorghum	nucleus	65.12	55.16
TraesCS4B01G374800.1	Wheat	nucleus	65.01	55.07
TraesCS4D01G362600.1	Wheat	nucleus	64.79	54.88
HORVU4Hr1G088270.17	Barley	mitochondrion	62.19	51.02
Solyc01g079250.2.1	Tomato	nucleus	39.39	48.27
Solyc09g097820.2.1	Tomato	nucleus	36.0	46.03
Solyc09g008120.2.1	Tomato	nucleus	34.31	42.76
Solyc12g089010.1.1	Tomato	nucleus	37.7	41.23
Solyc05g015040.2.1	Tomato	nucleus	30.14	38.14
Solyc01g110990.2.1	Tomato	nucleus	43.0	34.29
Solyc07g039550.2.1	Tomato	nucleus	43.68	32.52
Solyc10g076910.1.1	Tomato	nucleus	40.29	27.78
Solyc01g006970.2.1	Tomato	nucleus	25.85	22.21
Solyc04g007510.2.1	Tomato	plastid	26.3	20.19
Solyc01g006710.2.1	Tomato	mitochondrion	25.73	19.59
Solyc01g095710.2.1	Tomato	nucleus	28.89	19.09
Solyc03g118920.2.1	Tomato	mitochondrion, nucleus	25.73	18.98
Solyc07g044930.2.1	Tomato	nucleus	23.81	17.6
Solyc01g103690.2.1	Tomato	nucleus	25.17	15.51
Solyc11g010310.1.1	Tomato	nucleus	25.62	13.31
Solyc04g014210.2.1	Tomato	nucleus	25.85	13.24

Protein Annotations

Gene3D:1.20.120.1080	MapMan:16.4.7.1.5	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:DNA/RNA_helicase_DEAH_CS	InterPro:DUF1605
GO:GO:0000166	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005681	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	InterPro:Helicase-assoc_dom	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	UniProt:K4DD98	InterPro:P-loop_NTPase	PFAM:PF00271	PFAM:PF04408
PFAM:PF07717	ScanProsite:PS00690	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR18934	PANTHER:PTHR18934:SF117
SMART:SM00382	SMART:SM00487	SMART:SM00490	SMART:SM00847	SUPFAM:SSF52540	EnsemblPlantsGene:Solyc12g017700.1
EnsemblPlants:Solyc12g017700.1.1	UniParc:UPI0002769423	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr12:-:7243976..7246877

Molecular Weight (calculated)

100667.0 Da

IEP (calculated)

6.724

GRAVY (calculated)

-0.422

Length

886 amino acids

Sequence
(BLAST)

001: MEKSSPTLES KKRNTAGEDE DEDVKLKGKH TEQIENLREV SRQEYLKNRE KKKLKQLRDD IEDGQFLFEK IEKLSEPERH EHLYKQKIVE LVSKEQQCKD
101: AGEEQEIHPQ QAWEENQINN AKLNFGSRDR KQKDYQFVFE DQIEFIKSTI IDSDSDVDVD NEKLQCTRNS KLNEDRKALP IYPYKDALLQ AVHDHQVLII
201: VGETGSGKTT QIPQYLHEAG YTRSGGKMIG CTQPRRVAAM RVAARVSHEM GVKLGHEVGY SIRFEDCTCE KTVLKYMTDG MLLREFLTEP DLASYSVIMI
301: DEAHERTLST DILFGLIKDV ASARPHLKLL ISSATLDAEK FSDYFDRAPI FKIPGRRFTV EIHHLKAPIS DYLDAAVVTS LQIHATQPQG DGDILIFLTG
401: QEEIETAENI INRRIRALGT KMAELITCAI YANLPTELQA KIFEPTPEGA RKVVLATNIA ETSLTIDGIK YVIDTGFCKI NSYNPRTGTE SLMVAPISKA
501: SANQRAGRSG RIGPGKCFRL YTEHSYMNDL EDNTIPEIQR TNLTNVVLLL KSLGITDLLN FDFMDPPPAE ALLKALELLF ALGSLDKDGK LTKVGERMSE
601: FPLDPMLSKM IVASDKYKCS AEIISIAAML SVGNSIFYRP KDRQVQADNA WMNFHVGNVG DHIALLKVYN SWKETKFSSQ WCYENYIQVR SMKKARDIRD
701: QLEGRLERVG IDLTSNVNDL KAIKKSIISG FFPHSARLQK NGSYRTVKHP QTGHVHPSSG LSQVLPRWVV YHELVLTTKE YMRQVTELKP EWLVEVAPHY
801: YQLKDVEDSN AKKMPRGIFS NAEYFSSFLC VCHFNILLDI LYADARRSTR DIFGVDRVPK AAGGTGLYLK MELVDYLVEE LRNVAI

Best Arabidopsis Sequence Match ( AT1G32490.2 )
(BLAST)

0001: MASNDLKTWV SDKLMMLLGY SQAAVVNYLI AMAKKTKSPT ELVGELVDYG FSSSGDTRSF AEEIFARVPR KTAGVNLYQK HEAEAAMLVR KQKTYALLDA
0101: DDDEDEVVVE KKSSVSESRK SDKGKKRFRK KSGQSDESDG EVAVREDSRH VRRKVSEEDD GSESEEERVR DQKEREELEQ HLKDRDTART RKLTEQTLSK
0201: KEKEEAVRRA NALEKDDLYS LRKVSRQEYL KKREQKKLDE LRDEIEDEQY LFGGEKLTET ELREFRYKKE LYDLVKKRTQ DEDNVEEGGV DQEKRFSVAV
0301: QRYRDLDSTE KMNPFAEQEA WEDHQIGKAT LKFGAKNKQA SDDYQFVFED QINFIKESVM AGENYEDAMD AKQKSQDLAE KTALEELQEV RRSLPIYTYR
0401: DQLLKAVEEH QVLVIVGDTG SGKTTQIPQY LHEAGYTKRG KVGCTQPRRV AAMSVAARVA QEMGVKLGHE VGYSIRFEDC TSDKTVLKYM TDGMLLRELL
0501: GEPDLASYSV VIVDEAHERT LSTDILFGLV KDIARFRPDL KLLISSATMD AEKFSDYFDT APIFSFPGRR YPVEINYTSA PEADYMDAAI VTILTIHVRE
0601: PLGDILVFFT GQEEIETAEE ILKHRIRGLG TKIRELIICP IYANLPSELQ AKIFEPTPEG ARKVVLATNI AETSLTIDGI KYVVDPGFSK MKSYNPRTGM
0701: ESLLITPISK ASATQRAGRA GRTSPGKCYR LYTAFNYNND LEENTVPEVQ RTNLASVVLA LKSLGIHDLI NFDFMDPPPA EALVKSLELL FALGALNKLG
0801: ELTKAGRRMA EFPLDPMLSK MIVVSDKYKC SDEIISIAAM LSIGGSIFYR PKDKQVHADN ARMNFHTGNV GDHIALLKVY SSWKETNFST QWCYENYIQV
0901: RSMKRARDIR DQLEGLLERV EIDISSNLNE LDSVRKSIVA GFFPHTAKLQ KNGSYRTVKH PQTVHIHPNS GLSQVLPRWV VYHELVLTSK EYMRQVTELK
1001: PEWLIELAPH YYQLKDVEDA ASKKMPKGAG KAAM

Arabidopsis Description

ESP3ESP3 [Source:UniProtKB/TrEMBL;Acc:A0A178W3A5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.