Factsheet for Solyc09g008120.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400009842	Potato	mitochondrion	52.6	99.2
VIT_01s0137g00640.t01	Wine grape	nucleus	73.42	71.9
KRH75071	Soybean	nucleus	70.75	71.35
KRH70930	Soybean	nucleus	70.75	71.35
Os06t0192500-02	Rice	mitochondrion	38.96	67.89
KXG22666	Sorghum	nucleus	66.95	67.52
TraesCS7A01G156700.1	Wheat	plastid	66.53	66.34
TraesCS7D01G157100.1	Wheat	plastid	66.24	66.06
TraesCS7B01G060800.1	Wheat	plastid	66.24	66.06
CDY36075	Canola	nucleus	61.88	65.28
Zm00001d011963_P002	Maize	plasma membrane	66.1	65.19
Bra011023.1-P	Field mustard	nucleus	63.15	65.17
CDX85017	Canola	cytosol, plastid	65.96	64.96
AT1G26370.1	Thale cress	plastid	65.26	64.71
CDY16154	Canola	nucleus, plastid	65.4	64.32
CDY34567	Canola	nucleus	59.92	64.25
CDY02818	Canola	nucleus	59.35	63.55
CDY32702	Canola	nucleus	61.74	63.44
Bra024720.1-P	Field mustard	nucleus	64.98	62.77
HORVU7Hr1G032080.3	Barley	plastid	66.67	57.88
GSMUA_Achr5P05110_001	Banana	nucleus	67.09	46.95
Solyc09g097820.2.1	Tomato	nucleus	40.23	41.27
Solyc01g079250.2.1	Tomato	nucleus	40.37	39.7
Solyc05g015040.2.1	Tomato	nucleus	36.43	37.0
Solyc12g089010.1.1	Tomato	nucleus	39.66	34.81
Solyc12g017700.1.1	Tomato	nucleus	42.76	34.31
Solyc03g115390.2.1	Tomato	nucleus	43.04	33.66
Solyc01g110990.2.1	Tomato	nucleus	44.16	28.26
Solyc07g039550.2.1	Tomato	nucleus	44.87	26.81
Solyc10g076910.1.1	Tomato	nucleus	40.23	22.26
Solyc01g006970.2.1	Tomato	nucleus	30.66	21.14
Solyc04g007510.2.1	Tomato	plastid	30.38	18.72
Solyc01g006710.2.1	Tomato	mitochondrion	29.54	18.04
Solyc03g118920.2.1	Tomato	mitochondrion, nucleus	29.54	17.49
Solyc01g095710.2.1	Tomato	nucleus	31.93	16.93
Solyc07g044930.2.1	Tomato	nucleus	27.29	16.18
Solyc01g103690.2.1	Tomato	nucleus	29.68	14.67
Solyc11g010310.1.1	Tomato	nucleus	30.94	12.9
Solyc04g014210.2.1	Tomato	nucleus	31.36	12.89

Protein Annotations

Gene3D:1.20.120.1080	MapMan:16.4.7.1.7	Gene3D:3.40.50.300	InterPro:DNA/RNA_helicase_DEAH_CS	InterPro:DUF1605	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016787	GO:GO:0043484	InterPro:Helicase-assoc_dom	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	UniProt:K4CQK1	InterPro:P-loop_NTPase	PFAM:PF00271	PFAM:PF04408
PFAM:PF07717	ScanProsite:PS00690	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR18934	PANTHER:PTHR18934:SF85
SMART:SM00487	SMART:SM00490	SMART:SM00847	SUPFAM:SSF52540	EnsemblPlantsGene:Solyc09g008120.2	EnsemblPlants:Solyc09g008120.2.1
UniParc:UPI000276BCF5	:	:	:	:	:

Description

Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 [Source:Projected from Arabidopsis thaliana (AT1G26370) UniProtKB/Swiss-Prot;Acc:F4IE66]

Coordinates

chr9:+:1591043..1599834

Molecular Weight (calculated)

80173.9 Da

IEP (calculated)

8.735

GRAVY (calculated)

-0.237

Length

711 amino acids

Sequence
(BLAST)

001: MPSMAANNFS RNTHQNQTKG DFVSRKQKIE QQRKNLPIAA VERRLVEEVR NNDTLIIVGE TGSGKTTQIP QYLYKWGFCR DGGIIGITQP RRVAAITVAK
101: RVAEECGIPL GQKVGYAIRF EDVTSGQTKI KYMTDGLLLR EALLDPYLSK YSVIIVDEAH ERTIHTDVLL GLLKNVQKAR SKSINGVVNT DHNNSNNGHA
201: LEERVDNQND GILKSCQVKK HNPLKLIIMS ASMDARVFSE YFGGAKAVHV QGRQFPVDIF YTHKPETDCI DAALITIFQI HLEEGPGDVL VFLTGQEEIE
301: SVERLIHERL RQLPECSRKL LTFPIFSSLP SEKQMRVFMP SPAGYRKVIL ATNIAETSVT IPGIRYVVDP GLVKARTYDP KMGVDSLIIV TTSKAQALQR
401: SGRAGRDGPG KCYRLYQESF FEKLTDSTLP EIKRCDLSNV VLQLKALGID DVINFDFIEK PDRTAVVNSL WSLYLLGAVT EDNKLSDVGR QMARLPLDPV
501: YSKALIIASQ FGCLKEMLIC VAMLSVESIF YAPREKLEES RNALKSFASP EGDHLTLLNV YRAADEFFQK NKMVHSEEKA EKNLRKWCKD NYINSRSLKH
601: ARDIHSQIVR NVEQMGLRVT SCEDDTLLLR RCLAASFFLK AAMKQPDGAY RVTLSGLIVQ IHPSSVLFRA KPECIVFNEL VHTNHSYVRN VSRIDYLWLV
701: ELAPHLYAVQ D

Best Arabidopsis Sequence Match ( AT1G26370.1 )
(BLAST)

001: MPSMAQGELK SFVQNSRPNP KSPTVSPFSM RQKIAEHRRS LPIASVEKRL VEEVQKNDIL IIVGETGSGK TTQLPQFLYN AGFCREGKMI GITQPRRIAA
101: VTVAKRVAEE CEVQLGQKVG YSIRFDDTTS GSTRLKYMTD GLLLREALLD PHLSRYSVII VDEAHDRSVH TDVLLALLKK IQRTRSQPVS EKTEFGNVAS
201: QVQTTTRDAN GPQQNGVLKG YQGRKLSPLK LIIMSASLDA RVFSEYFGGA KAVHVQGRQF PVDILYTVHP ESDYVDATLV TIFQIHFEEK PGDILVFLTG
301: QDEIESVERL VQERLQNIPE DKRKLLPLAI FSALPSEQQM KVFAPAPTGF RKVILATNIA ETSITIPGIR YVIDPGFVKA RSYDPSKGME SLDVVPASKA
401: QTLQRSGRAG REGPGKSFRL YPEREFEKLE DSTKPEIKRC NLSNIILQLK ALGIDDIVGF DFIDKPSRGA IIKALAELHS LGALADDGKL ENPVGYQMSR
501: LPLEPVYSKA LILANQFNCL EEMLITVAVL SVESIFYDPR EKREEARTSK NHFASVEGDH LTYLSVYRES DEFLEKRKAA GSGNNIDKIM KKWCKENYVN
601: SRSLKHARDI YRQIREHVEQ IGFNVSSCGN DMLAFRRCLA ASFFLKAAQR QLDGTYRALE SGEVVHIHPT SVLFRAKPEC VIFNELMQTS KKYIKNLTII
701: DSLWLSELAP HHFQTAE

Arabidopsis Description

RID1Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 [Source:UniProtKB/Swiss-Prot;Acc:F4IE66]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.