Factsheet for GSMUA_Achr5P05110_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	plastid
EpiLoc:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os06t0192500-02	Rice	mitochondrion	32.58	81.13
KXG22666	Sorghum	nucleus	53.05	76.45
TraesCS7D01G157100.1	Wheat	plastid	53.25	75.88
TraesCS7A01G156700.1	Wheat	plastid	53.25	75.88
TraesCS7B01G060800.1	Wheat	plastid	53.05	75.6
Zm00001d011963_P002	Maize	plasma membrane	52.66	74.2
KRH70930	Soybean	nucleus	50.69	73.05
VIT_01s0137g00640.t01	Wine grape	nucleus	52.07	72.86
KRH75071	Soybean	nucleus	50.39	72.62
PGSC0003DMT400009842	Potato	mitochondrion	26.28	70.82
Solyc09g008120.2.1	Tomato	nucleus	46.95	67.09
HORVU7Hr1G032080.3	Barley	plastid	53.25	66.06
CDY34567	Canola	nucleus	42.72	65.46
CDX85017	Canola	cytosol, plastid	46.26	65.1
CDY16154	Canola	nucleus, plastid	46.06	64.73
AT1G26370.1	Thale cress	plastid	45.67	64.71
Bra011023.1-P	Field mustard	nucleus	43.8	64.59
CDY36075	Canola	nucleus	42.62	64.24
CDY32702	Canola	nucleus	43.5	63.87
Bra024720.1-P	Field mustard	nucleus	46.26	63.86
CDY02818	Canola	nucleus	41.63	63.7
GSMUA_Achr1P18470_001	Banana	cytosol	15.06	42.98
GSMUA_Achr3P12710_001	Banana	nucleus	29.92	41.87
GSMUA_Achr11P...	Banana	nucleus	14.47	38.79
GSMUA_Achr4P23370_001	Banana	nucleus	28.05	38.0
GSMUA_Achr2P20940_001	Banana	nucleus	23.72	35.92
GSMUA_Achr3P24350_001	Banana	endoplasmic reticulum, vacuole	24.02	34.32
GSMUA_Achr10P...	Banana	nucleus	27.46	28.62
GSMUA_Achr8P12550_001	Banana	cytosol	11.91	26.59
GSMUA_Achr3P08220_001	Banana	nucleus	20.96	19.81
GSMUA_Achr4P07530_001	Banana	mitochondrion	20.96	18.28
GSMUA_Achr3P20920_001	Banana	mitochondrion, nucleus	21.75	17.67
GSMUA_Achr5P02110_001	Banana	mitochondrion	19.09	17.23
GSMUA_Achr8P12540_001	Banana	nucleus	8.46	15.58
GSMUA_Achr8P17640_001	Banana	nucleus	18.01	14.85
GSMUA_Achr6P17860_001	Banana	nucleus	20.57	14.69

Protein Annotations

Gene3D:1.10.40.40	Gene3D:1.20.120.1080	Gene3D:3.40.50.1000	Gene3D:3.40.50.300	MapMan:35.1	InterPro:5'(3')-deoxyribonucleotidase
InterPro:DNA/RNA_helicase_DEAH_CS	InterPro:DUF1605	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004386
GO:GO:0005488	GO:GO:0005524	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008253
GO:GO:0009056	GO:GO:0009058	GO:GO:0009264	GO:GO:0009987	GO:GO:0016311	GO:GO:0016787
EnsemblPlantsGene:GSMUA_Achr5G05110_001	EnsemblPlants:GSMUA_Achr5P05110_001	EnsemblPlants:GSMUA_Achr5T05110_001	InterPro:HAD-like_sf	InterPro:HAD_sf	InterPro:Helicase-assoc_dom
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR023214	UniProt:M0SVU0
InterPro:P-loop_NTPase	PFAM:PF00271	PFAM:PF04408	PFAM:PF06941	PFAM:PF07717	ScanProsite:PS00690
PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR18934	PANTHER:PTHR18934:SF85	SMART:SM00487	SMART:SM00490
SMART:SM00847	SUPFAM:SSF52540	SUPFAM:SSF56784	UniParc:UPI0002961004	SEG:seg	:

Description

ATP-dependent RNA helicase, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr5G05110_001]

Coordinates

chr5:-:3774389..3793001

Molecular Weight (calculated)

114225.0 Da

IEP (calculated)

8.578

GRAVY (calculated)

-0.228

Length

1016 amino acids

Sequence
(BLAST)

0001: MPSFPNISTS KDQQDGRKLA NGDCKNQQVL ARRQLILQHR KSLPIASVER RLVEEVRKND TLIIVGETGS GKTTQLPQFL CNAGFCRDEK IIGVTQPRRV
0101: AAVTVAKRVA EECNVELGQK VGYSIRFEDA TSSSTRIKYM TDGLLLREAL LDPLLSRYSI IIVDEAHERT VHTDVLLGLL KKVQLASAKS TSLKLIIMSA
0201: SLDARCFSEY FGGAKAVHVH GRQYPVEVLY TYQPEPDYLD ATLITIFQIH LEEASGDILA FLTGQEEIES VERLVHDRIQ QLPDGSQNLL TVPIYASLPS
0301: EQQMNAFKPA PSGFRKVILA TNIAETSVTI PGIKYVIDPG LVKARSYNPV TGMESLIIIP TSKAQALQRS GRAGREGPGK CFRLYPESEF SKLTDSTVPE
0401: IKRCNLSNVV LQLKALGIDD IIGFDFMEKP SRMAIVKSLE QLFLLGALSD DYKLSSPVGQ QMARLPLDPM YSKALILAKE FKCLEEMLIV VAMLSVESIF
0501: YFPREKMEEA RAARKSFSSP EGDHITLVNV YRASAECLEK SKTTNSKEKT MEKKLNKWCR ENFINYRSLR HARDIHSQIE GHIRQMGFSP SSCGDDMLQF
0601: RRCLTASFFL NAAMKQPDGS YRALSSSQTV QVHPSSVLFR TKADCIIFNE LVRTNQNYVR NVTRVDPLWL PELAPQYYAA DSSVTRWSDR ASPMALYKHL
0701: LSTSFYGFSH MSEANQQGRR HRSILVRMDM GSQVGSVNAL GLKSCLDRHD GVFRKADGEI QRAHCVAPHH HLVQGSDFVL SEDVGLKLAN EGGSYKHGFP
0801: IGFPSYPVTE KLVVAVDVDE VLGSFLAALN KFVANRYSSN HSVSEYYVYE FFKIWKCSRA EADIRVHEFF KTSYFKTGIH PIPGARYALH KLSTFCNLSV
0901: VTSRQNAIKD HTLEWIEKYY PGLFKEIHFG NHFALDGISR PKSEICRSLG AHVLIDDNPK YALECAEVGI RVLLFDYDNS YPWSKTGSAT SHPMVTKVHN
1001: WRQVEQQLVS WALTVV

Best Arabidopsis Sequence Match ( AT1G26370.1 )
(BLAST)

001: MPSMAQGELK SFVQNSRPNP KSPTVSPFSM RQKIAEHRRS LPIASVEKRL VEEVQKNDIL IIVGETGSGK TTQLPQFLYN AGFCREGKMI GITQPRRIAA
101: VTVAKRVAEE CEVQLGQKVG YSIRFDDTTS GSTRLKYMTD GLLLREALLD PHLSRYSVII VDEAHDRSVH TDVLLALLKK IQRTRSQPVS EKTEFGNVAS
201: QVQTTTRDAN GPQQNGVLKG YQGRKLSPLK LIIMSASLDA RVFSEYFGGA KAVHVQGRQF PVDILYTVHP ESDYVDATLV TIFQIHFEEK PGDILVFLTG
301: QDEIESVERL VQERLQNIPE DKRKLLPLAI FSALPSEQQM KVFAPAPTGF RKVILATNIA ETSITIPGIR YVIDPGFVKA RSYDPSKGME SLDVVPASKA
401: QTLQRSGRAG REGPGKSFRL YPEREFEKLE DSTKPEIKRC NLSNIILQLK ALGIDDIVGF DFIDKPSRGA IIKALAELHS LGALADDGKL ENPVGYQMSR
501: LPLEPVYSKA LILANQFNCL EEMLITVAVL SVESIFYDPR EKREEARTSK NHFASVEGDH LTYLSVYRES DEFLEKRKAA GSGNNIDKIM KKWCKENYVN
601: SRSLKHARDI YRQIREHVEQ IGFNVSSCGN DMLAFRRCLA ASFFLKAAQR QLDGTYRALE SGEVVHIHPT SVLFRAKPEC VIFNELMQTS KKYIKNLTII
701: DSLWLSELAP HHFQTAE

Arabidopsis Description

RID1Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 [Source:UniProtKB/Swiss-Prot;Acc:F4IE66]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.