Factsheet for TraesCS7D01G157100.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 2
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G060800.1	Wheat	plastid	99.58	99.58
TraesCS7A01G156700.1	Wheat	plastid	99.58	99.58
Os06t0192500-02	Rice	mitochondrion	53.02	92.65
KXG22666	Sorghum	nucleus	88.78	89.79
Zm00001d011963_P002	Maize	plasma membrane	88.36	87.38
HORVU7Hr1G032080.3	Barley	plastid	98.46	85.71
KRH70930	Soybean	nucleus	70.83	71.63
KRH75071	Soybean	nucleus	70.55	71.35
VIT_01s0137g00640.t01	Wine grape	nucleus	71.11	69.83
PGSC0003DMT400009842	Potato	mitochondrion	35.62	67.37
Solyc09g008120.2.1	Tomato	nucleus	66.06	66.24
AT1G26370.1	Thale cress	plastid	64.24	63.88
CDY36075	Canola	nucleus	60.31	63.8
Bra011023.1-P	Field mustard	nucleus	61.57	63.72
CDY16154	Canola	nucleus, plastid	64.52	63.62
CDX85017	Canola	cytosol, plastid	64.38	63.57
CDY34567	Canola	nucleus	58.49	62.9
CDY32702	Canola	nucleus	60.87	62.72
CDY02818	Canola	nucleus	58.34	62.65
Bra024720.1-P	Field mustard	nucleus	64.1	62.09
GSMUA_Achr5P05110_001	Banana	nucleus	75.88	53.25
TraesCS4D01G181700.1	Wheat	cytosol	40.81	40.36
TraesCS3D01G148100.1	Wheat	nucleus	39.41	40.09
TraesCS4D01G074200.1	Wheat	nucleus	35.34	35.74
TraesCS3D01G264900.1	Wheat	plastid	40.95	31.7
TraesCS4D01G362600.1	Wheat	nucleus	44.6	30.4
TraesCS1D01G243400.1	Wheat	nucleus	45.02	30.25
TraesCS7D01G341800.1	Wheat	nucleus	43.2	28.47
TraesCS4D01G147900.1	Wheat	nucleus	45.02	24.9
TraesCS2D01G231900.1	Wheat	nucleus	41.94	21.31
TraesCS1D01G148100.2	Wheat	nucleus	30.72	21.28
TraesCS5D01G397600.1	Wheat	nucleus	29.59	18.35
TraesCS6D01G279300.1	Wheat	nucleus	31.28	16.82
TraesCS3D01G025600.1	Wheat	mitochondrion, nucleus, plastid	28.61	16.43
TraesCS3D01G112900.1	Wheat	nucleus	29.45	15.71
TraesCS3D01G302800.2	Wheat	plastid	27.35	15.31
TraesCS2D01G302700.1	Wheat	plastid	29.87	14.91
TraesCS5D01G087800.2	Wheat	nucleus	29.03	12.36
TraesCS2D01G171200.2	Wheat	nucleus	28.89	11.8

Protein Annotations

Gene3D:1.20.120.1080	MapMan:16.4.7.1.7	Gene3D:3.40.50.300	InterPro:DNA/RNA_helicase_DEAH_CS	InterPro:DUF1605	GO:GO:0003674
GO:GO:0003824	GO:GO:0004386	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005730	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787
GO:GO:0043484	InterPro:Helicase-assoc_dom	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:P-loop_NTPase	PFAM:PF00271	PFAM:PF04408	PFAM:PF07717	ScanProsite:PS00690	PFscan:PS51192
PFscan:PS51194	PANTHER:PTHR18934	PANTHER:PTHR18934:SF85	SMART:SM00487	SMART:SM00490	SMART:SM00847
SUPFAM:SSF52540	EnsemblPlantsGene:TraesCS7D01G157100	EnsemblPlants:TraesCS7D01G157100.1	TIGR:cd00046	TIGR:cd00079	SEG:seg

Description

No Description!

Coordinates

chr7D:+:104890412..104898765

Molecular Weight (calculated)

79488.9 Da

IEP (calculated)

8.686

GRAVY (calculated)

-0.254

Length

713 amino acids

Sequence
(BLAST)

001: MPAVASFRAR ASAPAPEMPS FSSGASPQKQ QHNARRKQLI RQQRKSLPIA SVEKRLVDEV RKNDTLIVVG ETGSGKTTQL PQFLYDGGFC QDGKVIGITQ
101: PRRVAAVTVA KRVAEECNDQ LGRKVGYSIR FDDSTSNATR IKYMTDGLLL REALLDPLLS KYSVIVVDEA HERTVHTDVL LGLLKKVQHS RCLHANKNGK
201: ISDRPDHSQS STLKACQGIK IAPLKLIIMS ASLDAKCFSD YFGGAKAVHI QGRQYPVDTL YTYQPESDYL DATLVTIFQI HLEEGPGDIL AFLTGQEEIE
301: SLERLIQERA RQLPADSSKI WITPIYSSLP SEQQMNAFKP APSGARKVVL ATNIAETSVT IPGIKYVIDP GMVKARAYNP VTGMESLIII PVSKAQALQR
401: SGRAGREGPG KCFRLFQECE FDKLAESTIP EIKRCNLANV VLQLKALGID DIIGFDFMEK PSRTSILKSL EQLILLGALT DDYKLSDPVG KQMARLPLDP
501: MYSKALIVSN EFKCLEEMLI VVSMLSVESI FFTPREKLEE ARAARKSFES SEGDHITLVN VYRAAAECLE KSKNANAKEK TMEKALNRWC FENFINYRSL
601: RHARDVHSQI QGHVQQMGLN LSSCGDDMVQ FRRCLTAAFF LNAAMRQPDG SFRALATGQS VQMHPSSVLF RTKPDCVIFN ELVRTTQNYV KNLTRIDPLW
701: LAELAPQYYA TED

Best Arabidopsis Sequence Match ( AT1G26370.1 )
(BLAST)

001: MPSMAQGELK SFVQNSRPNP KSPTVSPFSM RQKIAEHRRS LPIASVEKRL VEEVQKNDIL IIVGETGSGK TTQLPQFLYN AGFCREGKMI GITQPRRIAA
101: VTVAKRVAEE CEVQLGQKVG YSIRFDDTTS GSTRLKYMTD GLLLREALLD PHLSRYSVII VDEAHDRSVH TDVLLALLKK IQRTRSQPVS EKTEFGNVAS
201: QVQTTTRDAN GPQQNGVLKG YQGRKLSPLK LIIMSASLDA RVFSEYFGGA KAVHVQGRQF PVDILYTVHP ESDYVDATLV TIFQIHFEEK PGDILVFLTG
301: QDEIESVERL VQERLQNIPE DKRKLLPLAI FSALPSEQQM KVFAPAPTGF RKVILATNIA ETSITIPGIR YVIDPGFVKA RSYDPSKGME SLDVVPASKA
401: QTLQRSGRAG REGPGKSFRL YPEREFEKLE DSTKPEIKRC NLSNIILQLK ALGIDDIVGF DFIDKPSRGA IIKALAELHS LGALADDGKL ENPVGYQMSR
501: LPLEPVYSKA LILANQFNCL EEMLITVAVL SVESIFYDPR EKREEARTSK NHFASVEGDH LTYLSVYRES DEFLEKRKAA GSGNNIDKIM KKWCKENYVN
601: SRSLKHARDI YRQIREHVEQ IGFNVSSCGN DMLAFRRCLA ASFFLKAAQR QLDGTYRALE SGEVVHIHPT SVLFRAKPEC VIFNELMQTS KKYIKNLTII
701: DSLWLSELAP HHFQTAE

Arabidopsis Description

RID1Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 [Source:UniProtKB/Swiss-Prot;Acc:F4IE66]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.