CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os06t0192500-02	Rice	mitochondrion	54.04	93.38
Zm00001d011963_P002	Maize	plasma membrane	93.33	91.26
TraesCS7D01G157100.1	Wheat	plastid	89.79	88.78
TraesCS7A01G156700.1	Wheat	plastid	89.79	88.78
TraesCS7B01G060800.1	Wheat	plastid	89.65	88.64
HORVU7Hr1G032080.3	Barley	plastid	89.93	77.41
KRH70930	Soybean	nucleus	71.91	71.91
KRH75071	Soybean	nucleus	71.77	71.77
VIT_01s0137g00640.t01	Wine grape	nucleus	72.06	69.97
PGSC0003DMT400009842	Potato	mitochondrion	36.6	68.44
Solyc09g008120.2.1	Tomato	nucleus	67.52	66.95
AT1G26370.1	Thale cress	plastid	65.53	64.44
Bra011023.1-P	Field mustard	nucleus	62.41	63.86
CDY36075	Canola	nucleus	60.99	63.8
CDX85017	Canola	cytosol, plastid	65.11	63.57
CDY16154	Canola	nucleus, plastid	65.11	63.49
CDY32702	Canola	nucleus	62.13	63.29
CDY02818	Canola	nucleus	59.57	63.25
CDY34567	Canola	nucleus	59.29	63.05
Bra024720.1-P	Field mustard	nucleus	64.68	61.96
GSMUA_Achr5P05110_001	Banana	nucleus	76.45	53.05
OQU86123	Sorghum	nucleus	40.71	41.0
KXG39505	Sorghum	cytosol	41.99	41.0
EER87951	Sorghum	nucleus, plastid	35.32	35.32
KXG30390	Sorghum	nucleus	45.96	30.98
EES02741	Sorghum	nucleus	45.96	30.98
OQU77934	Sorghum	nucleus	44.96	29.74
EES15324	Sorghum	nucleus	44.68	29.41
EER95349	Sorghum	nucleus	45.53	25.85
KXG36287	Sorghum	nucleus	42.41	23.27
KXG38358	Sorghum	nucleus	30.07	20.46
KXG37551	Sorghum	nucleus, vacuole	29.79	18.23
KXG30805	Sorghum	nucleus	32.06	17.71
KXG32067	Sorghum	mitochondrion	29.36	16.68
EES01523	Sorghum	nucleus	26.95	15.9
KXG26332	Sorghum	nucleus, plastid	30.64	15.15
OQU90279	Sorghum	nucleus	30.07	13.97

Protein Annotations

Gene3D:1.20.120.1080	MapMan:16.4.7.1.7	Gene3D:3.40.50.300	UniProt:A0A1B6PAE7	InterPro:DNA/RNA_helicase_DEAH_CS	InterPro:DUF1605
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0043484	InterPro:Helicase-assoc_dom
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	EnsemblPlants:KXG22666	ProteinID:KXG22666
ProteinID:KXG22666.1	InterPro:P-loop_NTPase	PFAM:PF00271	PFAM:PF04408	PFAM:PF07717	ScanProsite:PS00690
PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR18934	PANTHER:PTHR18934:SF85	SMART:SM00487	SMART:SM00490
SMART:SM00847	EnsemblPlantsGene:SORBI_3009G254100	SUPFAM:SSF52540	UniParc:UPI00081AE5DC	SEG:seg	:

Description

hypothetical protein

Coordinates

chr9:-:58801713..58810021

Molecular Weight (calculated)

78865.5 Da

IEP (calculated)

8.358

GRAVY (calculated)

-0.193

Length

705 amino acids

Sequence
(BLAST)

001: MYMPTNFDCF EKIIVCTPMS FTGSAPGWRQ LIRQQRKSLP IASVEKRLVE EVRKNDTLII VGETGSGKTT QLPQFLYDGG FCKDGKVIGI TQPRRVAAVT
101: VAKRVAEECN DQLGKKVGYS IRFDDSTSNA TRIKYMTDGL LLREALLDPL LSKYSVIVVD EAHERTVHTD VLLGLLKKVQ HSRANANKNG KTLPDVQGHS
201: QNLTLKECQG IRCAPLKLII MSASLDAKCF SDYFGGAKAV HIQGRQYPVD ILYTYQPESD YMDATLVTIF QIHLEEGPGD ILAFLTGQEE IESLERLIHE
301: RARLFPPESS KIWVTPIYSS LPSEQQMNAF KPAPAGTRKV VLATNIAETS VTIPGIKYVI DPGMVKARAY NPVTGMESLI IIPVSKAQAL QRSGRAGREG
401: PGKCFRLFQE SEFDKLVDST VPEIKRCNLS NVVLQLKALG IDDIIGFDFM EKPSRTAILK SLEQLILLGA LTDDYKLSDP VGHQMARLPL DPMYSKALIV
501: ASKFKCLEEM LIVVSMLSVE SIFFSVREKL EEARAARKGF ESAEGDHITL VNVYRAAAEC LEKSRNANAK EKTMEKALNR WCRENFINYR SLRHARDVHS
601: QIQGHAQQMG LNLSSCGDDM VLFRRCLTSA FFLNAAMRQP DGSYRALATG QSVQIHPSSV LFRTKPDCVI FNELVRTTQN YVKNLTRIDP LWLAELAPQY
701: YATEE

Best Arabidopsis Sequence Match ( AT1G26370.1 )
(BLAST)

001: MPSMAQGELK SFVQNSRPNP KSPTVSPFSM RQKIAEHRRS LPIASVEKRL VEEVQKNDIL IIVGETGSGK TTQLPQFLYN AGFCREGKMI GITQPRRIAA
101: VTVAKRVAEE CEVQLGQKVG YSIRFDDTTS GSTRLKYMTD GLLLREALLD PHLSRYSVII VDEAHDRSVH TDVLLALLKK IQRTRSQPVS EKTEFGNVAS
201: QVQTTTRDAN GPQQNGVLKG YQGRKLSPLK LIIMSASLDA RVFSEYFGGA KAVHVQGRQF PVDILYTVHP ESDYVDATLV TIFQIHFEEK PGDILVFLTG
301: QDEIESVERL VQERLQNIPE DKRKLLPLAI FSALPSEQQM KVFAPAPTGF RKVILATNIA ETSITIPGIR YVIDPGFVKA RSYDPSKGME SLDVVPASKA
401: QTLQRSGRAG REGPGKSFRL YPEREFEKLE DSTKPEIKRC NLSNIILQLK ALGIDDIVGF DFIDKPSRGA IIKALAELHS LGALADDGKL ENPVGYQMSR
501: LPLEPVYSKA LILANQFNCL EEMLITVAVL SVESIFYDPR EKREEARTSK NHFASVEGDH LTYLSVYRES DEFLEKRKAA GSGNNIDKIM KKWCKENYVN
601: SRSLKHARDI YRQIREHVEQ IGFNVSSCGN DMLAFRRCLA ASFFLKAAQR QLDGTYRALE SGEVVHIHPT SVLFRAKPEC VIFNELMQTS KKYIKNLTII
701: DSLWLSELAP HHFQTAE

Arabidopsis Description

RID1Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 [Source:UniProtKB/Swiss-Prot;Acc:F4IE66]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.