Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d012661_P002 | Maize | mitochondrion, plastid | 92.38 | 84.92 |
| Os01t0767700-01 | Rice | nucleus | 83.77 | 81.85 |
| TraesCS3B01G337600.3 | Wheat | nucleus | 78.91 | 78.91 |
| TraesCS3A01G298900.1 | Wheat | nucleus | 77.24 | 78.55 |
| TraesCS3D01G302800.2 | Wheat | plastid | 78.66 | 73.78 |
| HORVU3Hr1G074660.7 | Barley | plastid | 77.49 | 72.68 |
| GSMUA_Achr5P02110_001 | Banana | mitochondrion | 62.76 | 66.61 |
| VIT_12s0028g01050.t01 | Wine grape | nucleus | 61.67 | 59.87 |
| Solyc07g044930.2.1 | Tomato | nucleus | 59.5 | 59.3 |
| KRH73592 | Soybean | nucleus | 55.9 | 57.49 |
| KRH14525 | Soybean | nucleus | 55.65 | 57.13 |
| CDY10756 | Canola | nucleus | 50.21 | 55.1 |
| Bra021665.1-P | Field mustard | nucleus | 55.98 | 51.26 |
| AT2G30800.1 | Thale cress | nucleus | 55.65 | 51.19 |
| CDX97797 | Canola | nucleus | 54.64 | 50.58 |
| CDY29644 | Canola | nucleus | 55.31 | 50.57 |
| Bra018293.1-P | Field mustard | plasma membrane, vacuole | 54.06 | 48.94 |
| CDY10215 | Canola | nucleus | 50.54 | 47.04 |
| AT1G06670.1 | Thale cress | nucleus | 50.71 | 38.45 |
| KXG38358 | Sorghum | nucleus | 28.54 | 32.92 |
| KXG39505 | Sorghum | cytosol | 17.66 | 29.22 |
| KXG32067 | Sorghum | mitochondrion | 29.12 | 28.04 |
| OQU86123 | Sorghum | nucleus | 16.07 | 27.43 |
| KXG37551 | Sorghum | nucleus, vacuole | 26.19 | 27.17 |
| KXG22666 | Sorghum | nucleus | 15.9 | 26.95 |
| EER87951 | Sorghum | nucleus, plastid | 15.73 | 26.67 |
| KXG26332 | Sorghum | nucleus, plastid | 25.27 | 21.18 |
| EES15324 | Sorghum | nucleus | 18.74 | 20.91 |
| KXG30390 | Sorghum | nucleus | 17.99 | 20.55 |
| EES02741 | Sorghum | nucleus | 17.99 | 20.55 |
| OQU77934 | Sorghum | nucleus | 17.82 | 19.98 |
| EER95349 | Sorghum | nucleus | 19.08 | 18.36 |
| KXG36287 | Sorghum | nucleus | 18.24 | 16.96 |
| KXG30805 | Sorghum | nucleus | 16.65 | 15.6 |
| OQU90279 | Sorghum | nucleus | 16.32 | 12.85 |
Protein Annotations
| Gene3D:1.20.120.1080 | Gene3D:3.30.1370.50 | Gene3D:3.40.50.300 | MapMan:35.1 | InterPro:Ankyrin_rpt-contain_dom | InterPro:Ankyrin_rpt-contain_sf |
| UniProt:C5XKY5 | InterPro:DEAD/DEAH_box_helicase_dom | InterPro:DUF1605 | EnsemblPlants:EES01523 | ProteinID:EES01523 | ProteinID:EES01523.2 |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004386 | GO:GO:0005488 |
| GO:GO:0005524 | GO:GO:0016787 | InterPro:Helicase-assoc_dom | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001374 |
| InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR020683 | InterPro:IPR036770 | InterPro:IPR036867 | InterPro:P-loop_NTPase |
| PFAM:PF00270 | PFAM:PF00271 | PFAM:PF01424 | PFAM:PF04408 | PFAM:PF07717 | PFscan:PS50297 |
| PFscan:PS51061 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR18934 | PANTHER:PTHR18934:SF100 | InterPro:R3H_DEXH_helicase |
| InterPro:R3H_dom | InterPro:R3H_dom_sf | SMART:SM00393 | SMART:SM00487 | SMART:SM00490 | SMART:SM00847 |
| EnsemblPlantsGene:SORBI_3003G308500 | SUPFAM:SSF48403 | SUPFAM:SSF52540 | SUPFAM:SSF82708 | UniParc:UPI00081AEA49 | SEG:seg |
Description
hypothetical protein
Coordinates
chr3:+:63703175..63713965
Molecular Weight (calculated)
132085.0 Da
IEP (calculated)
7.570
GRAVY (calculated)
-0.324
Length
1195 amino acids
Sequence
(BLAST)
(BLAST)
0001: MGRKGRKGKG AAAGPAAGGS GGMREATLVR VSKVLEDFRA SNAEVYTFEP GISRQERAAI HQMCRKMGML SKSSGNGEKR CLSVYKRKQK REPEMEEGPS
0101: YLGFSEEARH VLQDLFMHYP PGDADLNGDF DRNSSDKAAN IKWKTDSAFC RPVMSKLDIT KKVEMLASKV NGSYQLRKIM EDRTKLPISS FKDVITSTLE
0201: NHQVVLISGQ TGCGKTTQVP QYILDHMWGK GESCKIICTQ PRRISAISVA ERISAERGEA VGDTVGYKIR LESKGGQNSS VLFCTNGVLL RVLIGRGTKT
0301: SKARNPSKAR NQKRSLDDAI LGITHIIVDE IHERDRFSDF MLTILRDLLP VYPHLRLVLM SATIDAERFS QYFNGCSVIQ VPGFTYPVKS FYLEDVLSIL
0401: QSAGDNHLNT TSDKKESIVL TDDFKSSMDD SINLALVNDE FDPLLELISA EQNREVCNYQ HSETGVTPLI VFAAKGQLGD VCMLLSFGVD CSAQDHDGKS
0501: ALDWAQEENQ QEVYEVIKKH MECSSEKSTE DNELLNKYLA TINPEHIDTL LIERLLGKIC VDSNEGAILV FLPGWEDINQ TRERLFASPF FRDSSRFLVL
0601: SLHSMIPSSE QKKVFKRPPA GVRKIILSTN IAETAVTIDD VVFVIDSGRM KEKSYDPYNN VSTLHASWVS KASARQREGR AGRCQPGTCY HLYSRFRASS
0701: LPDYQIPEIK RMPIEELCLQ VKLLDSNCRI ADFLKKTLDP PIPETVGNAI AVLQDLGALT QDEQLTELGE KLGSLPVHPS TTKMLLFAIL MNCLDPALTL
0801: ACAADYRDPF VLPIAPDERK RAAAARVELA SLYGGFSDQL AVVAAFDCWR RARDRGQESQ FCAKYFVSSN IMNMLSNMRK QLQNELSQRG FVPADASACS
0901: LNSKDPGIMR AVLMAGAYPM VGKLLPPRKN ARKAVVETAS GAKVRLHPHS CNFNLSFNKS YGNPLLIYDE ITRGDGGMYI KNSSVVGSYP LLLIATEMVV
1001: APPDDDSDEE ENSSEDEAEE STLVQHKEDI MSSPDSTVSV VVDRWLRFDA TALDVAQIYC LRERLASAIL FKVKHPQDVL PPALGASTYA IACILSYDGL
1101: PAMVPPNDLS ANQGSGQNLA EASRFSQGRR TGYIPPSGFL MSLLADKTHP GGASAHTQPS RAPVGRFDRS QRPFRSSGPG SSAPRSFKRQ RNAAR
0101: YLGFSEEARH VLQDLFMHYP PGDADLNGDF DRNSSDKAAN IKWKTDSAFC RPVMSKLDIT KKVEMLASKV NGSYQLRKIM EDRTKLPISS FKDVITSTLE
0201: NHQVVLISGQ TGCGKTTQVP QYILDHMWGK GESCKIICTQ PRRISAISVA ERISAERGEA VGDTVGYKIR LESKGGQNSS VLFCTNGVLL RVLIGRGTKT
0301: SKARNPSKAR NQKRSLDDAI LGITHIIVDE IHERDRFSDF MLTILRDLLP VYPHLRLVLM SATIDAERFS QYFNGCSVIQ VPGFTYPVKS FYLEDVLSIL
0401: QSAGDNHLNT TSDKKESIVL TDDFKSSMDD SINLALVNDE FDPLLELISA EQNREVCNYQ HSETGVTPLI VFAAKGQLGD VCMLLSFGVD CSAQDHDGKS
0501: ALDWAQEENQ QEVYEVIKKH MECSSEKSTE DNELLNKYLA TINPEHIDTL LIERLLGKIC VDSNEGAILV FLPGWEDINQ TRERLFASPF FRDSSRFLVL
0601: SLHSMIPSSE QKKVFKRPPA GVRKIILSTN IAETAVTIDD VVFVIDSGRM KEKSYDPYNN VSTLHASWVS KASARQREGR AGRCQPGTCY HLYSRFRASS
0701: LPDYQIPEIK RMPIEELCLQ VKLLDSNCRI ADFLKKTLDP PIPETVGNAI AVLQDLGALT QDEQLTELGE KLGSLPVHPS TTKMLLFAIL MNCLDPALTL
0801: ACAADYRDPF VLPIAPDERK RAAAARVELA SLYGGFSDQL AVVAAFDCWR RARDRGQESQ FCAKYFVSSN IMNMLSNMRK QLQNELSQRG FVPADASACS
0901: LNSKDPGIMR AVLMAGAYPM VGKLLPPRKN ARKAVVETAS GAKVRLHPHS CNFNLSFNKS YGNPLLIYDE ITRGDGGMYI KNSSVVGSYP LLLIATEMVV
1001: APPDDDSDEE ENSSEDEAEE STLVQHKEDI MSSPDSTVSV VVDRWLRFDA TALDVAQIYC LRERLASAIL FKVKHPQDVL PPALGASTYA IACILSYDGL
1101: PAMVPPNDLS ANQGSGQNLA EASRFSQGRR TGYIPPSGFL MSLLADKTHP GGASAHTQPS RAPVGRFDRS QRPFRSSGPG SSAPRSFKRQ RNAAR
0001: MGNKRFRSDN NAGKPTSVEA TRIWATKVIE DFRASGNEVY TFEHNLSNNE RGVIHQMCRK MGIQSKSSGR GEQRRLSIFK SRHKNGNKNE ANEKSNKEKL
0101: KCVSFPPGAD VILQELFTHY PPCDGDTAAT SFTKYSGNKG KQGQWKDDFF RKPQISSEEI LEKVASLSSR LKKDKALKEI TKLRSKLPIT SFKDAITSAV
0201: ESNQVILISG ETGCGKTTQV PQYLLDHMWS SKRETCKIVC TQPRRISAMS VSERISCERG ESIGENIGYK VRLQSKGGRH SSVVFCTNGI LLRVLVGKGS
0301: VSSVSDITHI IVDEIHERDC YSDFMLAIIR DLLPSNPHLR LILMSATLDA ERFSGYFGGC PVVRVPGFTY PVRTLYLEDV LSILKSGGDN HLSSTNLSIS
0401: DHKLDLTDED KLALDEAIIL AWTNDEFDAL LDLVSSRGSH EIYNYQHQST WLTPLMVFAG KGRISDVCML LSFGADWSLK SKDGMTALEL AEAENQLEAA
0501: QIIREHADNS QSNSQQGQQL LDKYMATINP EQVDVSLIQQ LMRKICGDSE DGAILVFLPG WDDINKTRQR LLENPFFADS AKFDIICLHS MVPAGEQKKV
0601: FNRPPPGCRK IVLATNIAES AVTIDDVVYV IDSGRMKEKS YDPYNNVSTL QSSWVSKANA KQRQGRAGRC QPGICYHLYS RLRAASMPDF KVPEIKRMPV
0701: EELCLQVKIL DPNCKTNDFL QKLLDPPVDQ SIANALSILQ DIGALTPQEE LTELGEKFGH LPVHPLISKM LFFAVLVNCL DPALTLACAA DYKEPFTMPM
0801: SPVERQKAAA AKLELASLCG GDSDHLAVVA AFECWKNAKG RGLSAEFCSQ YFVSPSAMKM LDQMRSQLES ELKRHGIIPN DISSCSQNSR DPGILRAVLA
0901: VGLYPMVGRL CPAFGNNRRT IVETASGAKV RVHSLSNNFN LSSKKYDESL LVFDEITRGD GGMHIRNCTV ARDLPLLLIS TEIAVAPTGS SDSDDSNEEE
1001: EDDEEVAANT NEEVAANTNE EGMDIHKEES RRGAKMMSSP ENSVKLVVDR WLPFRTTALE VAQMYILRER LMASILFKVT HPREHLPPHL GASMHAIAGI
1101: LSYDGHAGLS CPPESMVPKH SRTEMYDTGG WEEKPNSFLN SLFWSLSLKE NKHPSHTNRN QQHNYNMAPT EAASIPRQQN YKQRNPKATN NTDSGKKKEK
1201: MFVNPTNRIN QPEAASTGKP SKHKSANSSG SSNKKENMPS DQAYGNKQHN TVPREAAAPM AKNQSSKKTK TRSGNNSDSG KKKEQYIPKR QREDKAEQK
0101: KCVSFPPGAD VILQELFTHY PPCDGDTAAT SFTKYSGNKG KQGQWKDDFF RKPQISSEEI LEKVASLSSR LKKDKALKEI TKLRSKLPIT SFKDAITSAV
0201: ESNQVILISG ETGCGKTTQV PQYLLDHMWS SKRETCKIVC TQPRRISAMS VSERISCERG ESIGENIGYK VRLQSKGGRH SSVVFCTNGI LLRVLVGKGS
0301: VSSVSDITHI IVDEIHERDC YSDFMLAIIR DLLPSNPHLR LILMSATLDA ERFSGYFGGC PVVRVPGFTY PVRTLYLEDV LSILKSGGDN HLSSTNLSIS
0401: DHKLDLTDED KLALDEAIIL AWTNDEFDAL LDLVSSRGSH EIYNYQHQST WLTPLMVFAG KGRISDVCML LSFGADWSLK SKDGMTALEL AEAENQLEAA
0501: QIIREHADNS QSNSQQGQQL LDKYMATINP EQVDVSLIQQ LMRKICGDSE DGAILVFLPG WDDINKTRQR LLENPFFADS AKFDIICLHS MVPAGEQKKV
0601: FNRPPPGCRK IVLATNIAES AVTIDDVVYV IDSGRMKEKS YDPYNNVSTL QSSWVSKANA KQRQGRAGRC QPGICYHLYS RLRAASMPDF KVPEIKRMPV
0701: EELCLQVKIL DPNCKTNDFL QKLLDPPVDQ SIANALSILQ DIGALTPQEE LTELGEKFGH LPVHPLISKM LFFAVLVNCL DPALTLACAA DYKEPFTMPM
0801: SPVERQKAAA AKLELASLCG GDSDHLAVVA AFECWKNAKG RGLSAEFCSQ YFVSPSAMKM LDQMRSQLES ELKRHGIIPN DISSCSQNSR DPGILRAVLA
0901: VGLYPMVGRL CPAFGNNRRT IVETASGAKV RVHSLSNNFN LSSKKYDESL LVFDEITRGD GGMHIRNCTV ARDLPLLLIS TEIAVAPTGS SDSDDSNEEE
1001: EDDEEVAANT NEEVAANTNE EGMDIHKEES RRGAKMMSSP ENSVKLVVDR WLPFRTTALE VAQMYILRER LMASILFKVT HPREHLPPHL GASMHAIAGI
1101: LSYDGHAGLS CPPESMVPKH SRTEMYDTGG WEEKPNSFLN SLFWSLSLKE NKHPSHTNRN QQHNYNMAPT EAASIPRQQN YKQRNPKATN NTDSGKKKEK
1201: MFVNPTNRIN QPEAASTGKP SKHKSANSSG SSNKKENMPS DQAYGNKQHN TVPREAAAPM AKNQSSKKTK TRSGNNSDSG KKKEQYIPKR QREDKAEQK
Arabidopsis Description
HVT1DExH-box ATP-dependent RNA helicase DExH6 [Source:UniProtKB/Swiss-Prot;Acc:F4INY4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.