Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc07g044930.2.1 | Tomato | nucleus | 69.54 | 71.39 |
| KRH73592 | Soybean | nucleus | 64.66 | 68.5 |
| KRH14525 | Soybean | nucleus | 64.09 | 67.78 |
| TraesCS3B01G337600.3 | Wheat | nucleus | 61.09 | 62.93 |
| TraesCS3A01G298900.1 | Wheat | nucleus | 59.63 | 62.47 |
| EES01523 | Sorghum | nucleus | 59.87 | 61.67 |
| GSMUA_Achr5P02110_001 | Banana | mitochondrion | 56.13 | 61.37 |
| Os01t0767700-01 | Rice | nucleus | 60.44 | 60.83 |
| CDY10756 | Canola | nucleus | 53.7 | 60.7 |
| TraesCS3D01G302800.2 | Wheat | plastid | 60.93 | 58.87 |
| HORVU3Hr1G074660.7 | Barley | plastid | 60.03 | 58.01 |
| Zm00001d012661_P002 | Maize | mitochondrion, plastid | 59.63 | 56.46 |
| AT2G30800.1 | Thale cress | nucleus | 58.73 | 55.66 |
| Bra021665.1-P | Field mustard | nucleus | 58.81 | 55.48 |
| CDX97797 | Canola | nucleus | 58.08 | 55.38 |
| CDY29644 | Canola | nucleus | 58.41 | 55.01 |
| Bra018293.1-P | Field mustard | plasma membrane, vacuole | 58.49 | 54.55 |
| CDY10215 | Canola | nucleus | 53.37 | 51.17 |
| AT1G06670.1 | Thale cress | nucleus | 53.61 | 41.88 |
| VIT_08s0032g01230.t01 | Wine grape | nucleus, plastid | 27.05 | 32.49 |
| VIT_17s0000g03030.t01 | Wine grape | nucleus | 26.24 | 30.56 |
| VIT_07s0005g01770.t01 | Wine grape | nucleus | 17.3 | 29.26 |
| VIT_10s0003g00810.t01 | Wine grape | nucleus | 15.92 | 28.24 |
| VIT_01s0011g04360.t01 | Wine grape | plastid | 26.73 | 27.86 |
| VIT_01s0137g00640.t01 | Wine grape | nucleus | 16.25 | 27.55 |
| VIT_01s0010g02780.t01 | Wine grape | nucleus | 13.48 | 25.94 |
| VIT_01s0010g02920.t01 | Wine grape | nucleus | 16.82 | 23.66 |
| VIT_17s0000g06950.t01 | Wine grape | nucleus | 18.03 | 21.06 |
| VIT_12s0035g00800.t01 | Wine grape | nucleus | 23.23 | 20.89 |
| VIT_08s0056g00470.t01 | Wine grape | nucleus | 18.2 | 19.06 |
| VIT_07s0005g00860.t01 | Wine grape | nucleus | 17.22 | 16.05 |
| VIT_07s0191g00210.t01 | Wine grape | nucleus | 16.25 | 11.51 |
Protein Annotations
| Gene3D:1.20.120.1080 | Gene3D:1.25.40.20 | EntrezGene:100260829 | wikigene:100260829 | Gene3D:3.30.1370.50 | Gene3D:3.40.50.300 |
| MapMan:35.1 | InterPro:Ankyrin_rpt-contain_dom | InterPro:Ankyrin_rpt-contain_sf | ProteinID:CCB47442 | ProteinID:CCB47442.1 | ncoils:Coil |
| InterPro:DEAD/DEAH_box_helicase_dom | InterPro:DUF1605 | UniProt:F6H574 | EMBL:FN595235 | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004004 | GO:GO:0004386 | GO:GO:0005488 |
| GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006139 |
| GO:GO:0006396 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016787 | InterPro:Helicase-assoc_dom |
| InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001374 | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR020683 |
| InterPro:IPR036770 | InterPro:IPR036867 | EntrezGene:LOC100260829 | wikigene:LOC100260829 | InterPro:P-loop_NTPase | PFAM:PF00270 |
| PFAM:PF00271 | PFAM:PF01424 | PFAM:PF04408 | PFAM:PF07717 | PFscan:PS50297 | PFscan:PS51061 |
| PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR18934 | PANTHER:PTHR18934:SF100 | InterPro:R3H_DEXH_helicase | InterPro:R3H_dom |
| InterPro:R3H_dom_sf | SMART:SM00393 | SMART:SM00487 | SMART:SM00490 | SMART:SM00847 | SUPFAM:SSF48403 |
| SUPFAM:SSF52540 | SUPFAM:SSF82708 | TIGR:TC60156 | UniParc:UPI0002109D85 | ArrayExpress:VIT_12s0028g01050 | EnsemblPlantsGene:VIT_12s0028g01050 |
| EnsemblPlants:VIT_12s0028g01050.t01 | RefSeq:XP_002278608 | RefSeq:XP_002278608.2 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr12:-:1520936..1546462
Molecular Weight (calculated)
136768.0 Da
IEP (calculated)
7.372
GRAVY (calculated)
-0.396
Length
1231 amino acids
Sequence
(BLAST)
(BLAST)
0001: MTRSGKKRQK DGEQNNPGVA EGTRIRISRA LQEFRETHNE VYTFEANLTN HERAVVHEVC RKMGMTSKSS GRGSQRRVSV YKTKKKVDTK KEEGNPYLNF
0101: SEEAKEVLLD LFTRYPPDDK EMVTQMVENG SGKTEKIWGK KDDIFGRPSM NKAEIAKKVE LLASRIEEDP HLRQITEGRS KLPIASFKDV ITSTIESHQV
0201: VLISGETGCG KTTQVPQFVL DYMWGKGEAC KIVCTQPRRI SATSVAERIS FEKGENVGDS VGYKIRLESK GGRHSSIIFC TNGILLRVLV SKGTDRLKPE
0301: ALRKAAKRDI SDITHIIVDE IHERDRYSDF MLAILRDMLA SYPHLRLILM SATIDAERFS QYFGGCPIIR VPGFTYPVKT FYLEDVLSIL KSTGNNNLDS
0401: TLLSLPVEDP KLIEDYGVAL DEAINLAWSN DEFDPLLDFV SSEGTPQVFN YQHSSTGLTP LMVFAGKGRV ADVCMMLSFG ADCHLKANDD TTALDLAERE
0501: NHREAAEMIK QHMENLLSNS VEEQQLLDKY LATNNPEIID VALVEQLLRK ICNDSKDGAI LVFLPGWDDI NRTREKLLSA SFFKDSSKFV VISLHSMVPS
0601: VEQKKVFKRP PPGCRKIVLS TNISETAITI DDVVYVIDSG RMKEKSYDPY NNVSTLQSAW ISKASAKQRE GRAGRCRPGV CYHLYSKLRA ASLPDFQVPE
0701: IKRMPIEELC LQVKLLDPNC KIEDFLRKTL DPPVFETIRN AVIVLQDIGA LSVDEKLTEL GKKLGSLPVH PLTSKMLFFA ILLNCLDPAL TLACASDYRD
0801: PFTLPMLPHE KKRATAAKAE LASLYGGHSD QLAVIAAFEC WKSAKEKGQE AQFCSQYFVS SGTMHMLAGM RKQLQTELIR NGFIPEDVSS CSLNARDPGI
0901: IHAVLVAGLY PMVGRLLPPH KSGKRSVVET ASGAKVRLHP HSNNFKLSFK KSDGRPLIIY DEITRGDGGM HIRNCTVIGP LPLLLLATEI VVAPGKGNDD
1001: DDEDCDDDSD GDDIDEDDSE GDGKEANNKL NGQQGEKIMS SPDNTVAVVV DRWHSFESTA LDVAQIYCLR ERLTAAIFFK ATHAREVLPP MLGASVYAIA
1101: CILSYDGLSG ISLSLESVDS LTSMVNATEI DNSASGRRRM GQNPNNFLKT LMSHGTRHKS PSKHHKNKGA ENWNSPPTYN AWSPYMPPSL TSNQRPSSQR
1201: PSFSGYGSSM HGPYGPRGDS FKRQRGNGSG K
0101: SEEAKEVLLD LFTRYPPDDK EMVTQMVENG SGKTEKIWGK KDDIFGRPSM NKAEIAKKVE LLASRIEEDP HLRQITEGRS KLPIASFKDV ITSTIESHQV
0201: VLISGETGCG KTTQVPQFVL DYMWGKGEAC KIVCTQPRRI SATSVAERIS FEKGENVGDS VGYKIRLESK GGRHSSIIFC TNGILLRVLV SKGTDRLKPE
0301: ALRKAAKRDI SDITHIIVDE IHERDRYSDF MLAILRDMLA SYPHLRLILM SATIDAERFS QYFGGCPIIR VPGFTYPVKT FYLEDVLSIL KSTGNNNLDS
0401: TLLSLPVEDP KLIEDYGVAL DEAINLAWSN DEFDPLLDFV SSEGTPQVFN YQHSSTGLTP LMVFAGKGRV ADVCMMLSFG ADCHLKANDD TTALDLAERE
0501: NHREAAEMIK QHMENLLSNS VEEQQLLDKY LATNNPEIID VALVEQLLRK ICNDSKDGAI LVFLPGWDDI NRTREKLLSA SFFKDSSKFV VISLHSMVPS
0601: VEQKKVFKRP PPGCRKIVLS TNISETAITI DDVVYVIDSG RMKEKSYDPY NNVSTLQSAW ISKASAKQRE GRAGRCRPGV CYHLYSKLRA ASLPDFQVPE
0701: IKRMPIEELC LQVKLLDPNC KIEDFLRKTL DPPVFETIRN AVIVLQDIGA LSVDEKLTEL GKKLGSLPVH PLTSKMLFFA ILLNCLDPAL TLACASDYRD
0801: PFTLPMLPHE KKRATAAKAE LASLYGGHSD QLAVIAAFEC WKSAKEKGQE AQFCSQYFVS SGTMHMLAGM RKQLQTELIR NGFIPEDVSS CSLNARDPGI
0901: IHAVLVAGLY PMVGRLLPPH KSGKRSVVET ASGAKVRLHP HSNNFKLSFK KSDGRPLIIY DEITRGDGGM HIRNCTVIGP LPLLLLATEI VVAPGKGNDD
1001: DDEDCDDDSD GDDIDEDDSE GDGKEANNKL NGQQGEKIMS SPDNTVAVVV DRWHSFESTA LDVAQIYCLR ERLTAAIFFK ATHAREVLPP MLGASVYAIA
1101: CILSYDGLSG ISLSLESVDS LTSMVNATEI DNSASGRRRM GQNPNNFLKT LMSHGTRHKS PSKHHKNKGA ENWNSPPTYN AWSPYMPPSL TSNQRPSSQR
1201: PSFSGYGSSM HGPYGPRGDS FKRQRGNGSG K
0001: MGNKRFRSDN NAGKPTSVEA TRIWATKVIE DFRASGNEVY TFEHNLSNNE RGVIHQMCRK MGIQSKSSGR GEQRRLSIFK SRHKNGNKNE ANEKSNKEKL
0101: KCVSFPPGAD VILQELFTHY PPCDGDTAAT SFTKYSGNKG KQGQWKDDFF RKPQISSEEI LEKVASLSSR LKKDKALKEI TKLRSKLPIT SFKDAITSAV
0201: ESNQVILISG ETGCGKTTQV PQYLLDHMWS SKRETCKIVC TQPRRISAMS VSERISCERG ESIGENIGYK VRLQSKGGRH SSVVFCTNGI LLRVLVGKGS
0301: VSSVSDITHI IVDEIHERDC YSDFMLAIIR DLLPSNPHLR LILMSATLDA ERFSGYFGGC PVVRVPGFTY PVRTLYLEDV LSILKSGGDN HLSSTNLSIS
0401: DHKLDLTDED KLALDEAIIL AWTNDEFDAL LDLVSSRGSH EIYNYQHQST WLTPLMVFAG KGRISDVCML LSFGADWSLK SKDGMTALEL AEAENQLEAA
0501: QIIREHADNS QSNSQQGQQL LDKYMATINP EQVDVSLIQQ LMRKICGDSE DGAILVFLPG WDDINKTRQR LLENPFFADS AKFDIICLHS MVPAGEQKKV
0601: FNRPPPGCRK IVLATNIAES AVTIDDVVYV IDSGRMKEKS YDPYNNVSTL QSSWVSKANA KQRQGRAGRC QPGICYHLYS RLRAASMPDF KVPEIKRMPV
0701: EELCLQVKIL DPNCKTNDFL QKLLDPPVDQ SIANALSILQ DIGALTPQEE LTELGEKFGH LPVHPLISKM LFFAVLVNCL DPALTLACAA DYKEPFTMPM
0801: SPVERQKAAA AKLELASLCG GDSDHLAVVA AFECWKNAKG RGLSAEFCSQ YFVSPSAMKM LDQMRSQLES ELKRHGIIPN DISSCSQNSR DPGILRAVLA
0901: VGLYPMVGRL CPAFGNNRRT IVETASGAKV RVHSLSNNFN LSSKKYDESL LVFDEITRGD GGMHIRNCTV ARDLPLLLIS TEIAVAPTGS SDSDDSNEEE
1001: EDDEEVAANT NEEVAANTNE EGMDIHKEES RRGAKMMSSP ENSVKLVVDR WLPFRTTALE VAQMYILRER LMASILFKVT HPREHLPPHL GASMHAIAGI
1101: LSYDGHAGLS CPPESMVPKH SRTEMYDTGG WEEKPNSFLN SLFWSLSLKE NKHPSHTNRN QQHNYNMAPT EAASIPRQQN YKQRNPKATN NTDSGKKKEK
1201: MFVNPTNRIN QPEAASTGKP SKHKSANSSG SSNKKENMPS DQAYGNKQHN TVPREAAAPM AKNQSSKKTK TRSGNNSDSG KKKEQYIPKR QREDKAEQK
0101: KCVSFPPGAD VILQELFTHY PPCDGDTAAT SFTKYSGNKG KQGQWKDDFF RKPQISSEEI LEKVASLSSR LKKDKALKEI TKLRSKLPIT SFKDAITSAV
0201: ESNQVILISG ETGCGKTTQV PQYLLDHMWS SKRETCKIVC TQPRRISAMS VSERISCERG ESIGENIGYK VRLQSKGGRH SSVVFCTNGI LLRVLVGKGS
0301: VSSVSDITHI IVDEIHERDC YSDFMLAIIR DLLPSNPHLR LILMSATLDA ERFSGYFGGC PVVRVPGFTY PVRTLYLEDV LSILKSGGDN HLSSTNLSIS
0401: DHKLDLTDED KLALDEAIIL AWTNDEFDAL LDLVSSRGSH EIYNYQHQST WLTPLMVFAG KGRISDVCML LSFGADWSLK SKDGMTALEL AEAENQLEAA
0501: QIIREHADNS QSNSQQGQQL LDKYMATINP EQVDVSLIQQ LMRKICGDSE DGAILVFLPG WDDINKTRQR LLENPFFADS AKFDIICLHS MVPAGEQKKV
0601: FNRPPPGCRK IVLATNIAES AVTIDDVVYV IDSGRMKEKS YDPYNNVSTL QSSWVSKANA KQRQGRAGRC QPGICYHLYS RLRAASMPDF KVPEIKRMPV
0701: EELCLQVKIL DPNCKTNDFL QKLLDPPVDQ SIANALSILQ DIGALTPQEE LTELGEKFGH LPVHPLISKM LFFAVLVNCL DPALTLACAA DYKEPFTMPM
0801: SPVERQKAAA AKLELASLCG GDSDHLAVVA AFECWKNAKG RGLSAEFCSQ YFVSPSAMKM LDQMRSQLES ELKRHGIIPN DISSCSQNSR DPGILRAVLA
0901: VGLYPMVGRL CPAFGNNRRT IVETASGAKV RVHSLSNNFN LSSKKYDESL LVFDEITRGD GGMHIRNCTV ARDLPLLLIS TEIAVAPTGS SDSDDSNEEE
1001: EDDEEVAANT NEEVAANTNE EGMDIHKEES RRGAKMMSSP ENSVKLVVDR WLPFRTTALE VAQMYILRER LMASILFKVT HPREHLPPHL GASMHAIAGI
1101: LSYDGHAGLS CPPESMVPKH SRTEMYDTGG WEEKPNSFLN SLFWSLSLKE NKHPSHTNRN QQHNYNMAPT EAASIPRQQN YKQRNPKATN NTDSGKKKEK
1201: MFVNPTNRIN QPEAASTGKP SKHKSANSSG SSNKKENMPS DQAYGNKQHN TVPREAAAPM AKNQSSKKTK TRSGNNSDSG KKKEQYIPKR QREDKAEQK
Arabidopsis Description
HVT1DExH-box ATP-dependent RNA helicase DExH6 [Source:UniProtKB/Swiss-Prot;Acc:F4INY4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.