Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G337600.3 | Wheat | nucleus | 86.03 | 91.72 |
| TraesCS3D01G302800.2 | Wheat | plastid | 91.37 | 91.37 |
| TraesCS3A01G298900.1 | Wheat | nucleus | 83.83 | 90.89 |
| Os01t0767700-01 | Rice | nucleus | 74.41 | 77.51 |
| EES01523 | Sorghum | nucleus | 72.68 | 77.49 |
| Zm00001d012661_P002 | Maize | mitochondrion, plastid | 74.41 | 72.92 |
| GSMUA_Achr5P02110_001 | Banana | mitochondrion | 57.69 | 65.28 |
| VIT_12s0028g01050.t01 | Wine grape | nucleus | 58.01 | 60.03 |
| Solyc07g044930.2.1 | Tomato | nucleus | 55.65 | 59.13 |
| KRH73592 | Soybean | nucleus | 52.2 | 57.23 |
| KRH14525 | Soybean | nucleus | 52.04 | 56.96 |
| CDY10756 | Canola | nucleus | 46.94 | 54.91 |
| AT2G30800.1 | Thale cress | nucleus | 51.18 | 50.19 |
| Bra021665.1-P | Field mustard | nucleus | 51.18 | 49.96 |
| CDX97797 | Canola | nucleus | 50.24 | 49.57 |
| CDY29644 | Canola | nucleus | 50.63 | 49.35 |
| Bra018293.1-P | Field mustard | plasma membrane, vacuole | 50.24 | 48.48 |
| CDY10215 | Canola | nucleus | 46.62 | 46.26 |
| AT1G06670.1 | Thale cress | nucleus | 47.49 | 38.39 |
| HORVU1Hr1G039880.1 | Barley | nucleus | 25.35 | 34.18 |
| HORVU4Hr1G052730.3 | Barley | cytosol | 16.33 | 28.85 |
| HORVU3Hr1G002800.8 | Barley | mitochondrion | 26.84 | 27.43 |
| HORVU5Hr1G094990.5 | Barley | endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole | 24.02 | 26.61 |
| HORVU3Hr1G028550.17 | Barley | cytosol | 13.42 | 24.53 |
| HORVU7Hr1G032080.3 | Barley | plastid | 15.46 | 24.05 |
| HORVU1Hr1G056370.1 | Barley | nucleus | 16.25 | 19.47 |
| HORVU1Hr1G056400.1 | Barley | nucleus | 16.25 | 19.44 |
| HORVU4Hr1G088270.17 | Barley | mitochondrion | 16.33 | 19.26 |
| HORVU0Hr1G007860.1 | Barley | nucleus | 17.74 | 18.2 |
| HORVU2Hr1G047870.2 | Barley | nucleus | 17.82 | 17.97 |
| HORVU0Hr1G039590.6 | Barley | nucleus | 15.54 | 15.38 |
| HORVU5Hr1G019730.1 | Barley | nucleus, plastid | 16.48 | 12.3 |
| HORVU2Hr1G030040.17 | Barley | nucleus | 16.88 | 11.78 |
Protein Annotations
| Gene3D:1.20.120.1080 | Gene3D:1.25.40.20 | Gene3D:3.30.1370.50 | Gene3D:3.40.50.300 | MapMan:35.1 | UniProt:A0A287LPB5 |
| InterPro:Ankyrin_rpt | InterPro:Ankyrin_rpt-contain_dom | InterPro:Ankyrin_rpt-contain_sf | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | InterPro:DUF1605 |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004386 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005524 | GO:GO:0016787 | EnsemblPlantsGene:HORVU3Hr1G074660 | EnsemblPlants:HORVU3Hr1G074660.7 | InterPro:Helicase-assoc_dom |
| InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001374 | InterPro:IPR001650 | InterPro:IPR002110 | InterPro:IPR014001 |
| InterPro:IPR020683 | InterPro:IPR036770 | InterPro:IPR036867 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 |
| PFAM:PF01424 | PFAM:PF04408 | PFAM:PF07717 | PFscan:PS50088 | PFscan:PS50297 | PFscan:PS51061 |
| PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR18934 | PANTHER:PTHR18934:SF100 | InterPro:R3H_DEXH_helicase | InterPro:R3H_dom |
| InterPro:R3H_dom_sf | SMART:SM00393 | SMART:SM00487 | SMART:SM00490 | SMART:SM00847 | SUPFAM:SSF48403 |
| SUPFAM:SSF52540 | SUPFAM:SSF82708 | UniParc:UPI000B465BEF | SEG:seg | : | : |
Description
No Description!
Coordinates
chrchr3H:-:559095323..559105693
Molecular Weight (calculated)
139646.0 Da
IEP (calculated)
8.328
GRAVY (calculated)
-0.368
Length
1274 amino acids
Sequence
(BLAST)
(BLAST)
0001: RSSSARMAHI SVHQTPSLHQ HRPPLAQIAP PPRCPRRFPP GPPQQHTKGK ATAAGSRQSG TRTGRRAAAP PNAAAAPPPS PLRDDGMGRK GPKDKLTASA
0101: LAAMSEETRV RITTVLEDFR ASDAHEYTFE PGLTNQERAA VHSMCRRMGM SSKSKGNGER RCLSVYKTKN TQGAGKEEGP SKLGLSEEAR EILLDLFTHY
0201: PPDDAELNGD AVKNPGDKAV KIRWKTDNAF SRPAMQKHDI AKKAEMLTSK LNGQLRKIGE NRSKLPIASF KDHLSSTLEN HQVVLISGET GCGKTTQVPQ
0301: YILDHVWGKH ESCKIICTQP RRISAMSVAE RISVERGETV GETVGYKIRL ESKGGKNSSI MFCTNGVLLR VLIGRVTNIS NRKRPSDDVM MGITHIIVDE
0401: IHERDRFSDL TLAILRDLLP MYPHLHLVLM SATIDAERFS QYFNGCPVIQ VPGHTYPVKS FYLEDVLSIL QSVGDNHLNT ETKDLGLDSV LTDDYKSSMD
0501: EAISIALVND EFDPLIELIS IEQNPEIFNY KHSETGVTPL MVFARKGQLG DICMLLSFGV DCSARDHDGK SALDWAQQEN QEEACEVIKK HMDCSPAKLP
0601: EENELLKKYL ATMNTEHIDT VLIERLLRKI CTDSKEGAIL VFLPGWEDIN QTRERLLASS FQDSSKFLVL SLHSMIPSLE QKKVFKRAPS GVRKIILSTN
0701: IAETAVTIDD VVFVIDSGRM KEKNYDPYNN VSTLHASWVC RASARQREGR AGRCQPGTCY HLYSRFRAAS LPEFQIPEIK RMPIEELCLQ VKLLDPNCKI
0801: ADFLKKTLDP PVTETVKNAI TVLQDLGALT QNEQLTDLGE KLGSLPVHPS TSKMLLFGIL MNCLDPALTL ACAAGYRDPF FLPMAPDERK KAAAAKVELA
0901: SLYGGYSDQL AVVAAFDCWT RAKEKGQEAL FCSKYFVASN TMDMLSSMRK QLQSELAQRG FLPADTSACS LNAKVPGIVS AVLVAGAYPM VGRLLPPLKN
1001: ARRAVVETAS GAKVRLHPHS SNFNLSFNKS SGNPLMIFDE ITRGDGGMYV KNCSVVGPYT LLLHATEIAV APPDDVSDEE DEGSSGDEAG KGTLGQQKKE
1101: IMSSPDNTVS VVVDRWLRFD ATALDVAQIY CLRERLASAI LFKVKHPQDV LPPALGATMY AIACILTYDG LPGNLTTNHG SGESSTGANG SAQARKVGFI
1201: PPGDFLMSLL SDVPTDAPHY QKSSNNHPGG GSGHNRSSRA PAGRFNQSQR PGRKNSGPGS SAPQSFKRQR DAAR
0101: LAAMSEETRV RITTVLEDFR ASDAHEYTFE PGLTNQERAA VHSMCRRMGM SSKSKGNGER RCLSVYKTKN TQGAGKEEGP SKLGLSEEAR EILLDLFTHY
0201: PPDDAELNGD AVKNPGDKAV KIRWKTDNAF SRPAMQKHDI AKKAEMLTSK LNGQLRKIGE NRSKLPIASF KDHLSSTLEN HQVVLISGET GCGKTTQVPQ
0301: YILDHVWGKH ESCKIICTQP RRISAMSVAE RISVERGETV GETVGYKIRL ESKGGKNSSI MFCTNGVLLR VLIGRVTNIS NRKRPSDDVM MGITHIIVDE
0401: IHERDRFSDL TLAILRDLLP MYPHLHLVLM SATIDAERFS QYFNGCPVIQ VPGHTYPVKS FYLEDVLSIL QSVGDNHLNT ETKDLGLDSV LTDDYKSSMD
0501: EAISIALVND EFDPLIELIS IEQNPEIFNY KHSETGVTPL MVFARKGQLG DICMLLSFGV DCSARDHDGK SALDWAQQEN QEEACEVIKK HMDCSPAKLP
0601: EENELLKKYL ATMNTEHIDT VLIERLLRKI CTDSKEGAIL VFLPGWEDIN QTRERLLASS FQDSSKFLVL SLHSMIPSLE QKKVFKRAPS GVRKIILSTN
0701: IAETAVTIDD VVFVIDSGRM KEKNYDPYNN VSTLHASWVC RASARQREGR AGRCQPGTCY HLYSRFRAAS LPEFQIPEIK RMPIEELCLQ VKLLDPNCKI
0801: ADFLKKTLDP PVTETVKNAI TVLQDLGALT QNEQLTDLGE KLGSLPVHPS TSKMLLFGIL MNCLDPALTL ACAAGYRDPF FLPMAPDERK KAAAAKVELA
0901: SLYGGYSDQL AVVAAFDCWT RAKEKGQEAL FCSKYFVASN TMDMLSSMRK QLQSELAQRG FLPADTSACS LNAKVPGIVS AVLVAGAYPM VGRLLPPLKN
1001: ARRAVVETAS GAKVRLHPHS SNFNLSFNKS SGNPLMIFDE ITRGDGGMYV KNCSVVGPYT LLLHATEIAV APPDDVSDEE DEGSSGDEAG KGTLGQQKKE
1101: IMSSPDNTVS VVVDRWLRFD ATALDVAQIY CLRERLASAI LFKVKHPQDV LPPALGATMY AIACILTYDG LPGNLTTNHG SGESSTGANG SAQARKVGFI
1201: PPGDFLMSLL SDVPTDAPHY QKSSNNHPGG GSGHNRSSRA PAGRFNQSQR PGRKNSGPGS SAPQSFKRQR DAAR
0001: MGNKRFRSDN NAGKPTSVEA TRIWATKVIE DFRASGNEVY TFEHNLSNNE RGVIHQMCRK MGIQSKSSGR GEQRRLSIFK SRHKNGNKNE ANEKSNKEKL
0101: KCVSFPPGAD VILQELFTHY PPCDGDTAAT SFTKYSGNKG KQGQWKDDFF RKPQISSEEI LEKVASLSSR LKKDKALKEI TKLRSKLPIT SFKDAITSAV
0201: ESNQVILISG ETGCGKTTQV PQYLLDHMWS SKRETCKIVC TQPRRISAMS VSERISCERG ESIGENIGYK VRLQSKGGRH SSVVFCTNGI LLRVLVGKGS
0301: VSSVSDITHI IVDEIHERDC YSDFMLAIIR DLLPSNPHLR LILMSATLDA ERFSGYFGGC PVVRVPGFTY PVRTLYLEDV LSILKSGGDN HLSSTNLSIS
0401: DHKLDLTDED KLALDEAIIL AWTNDEFDAL LDLVSSRGSH EIYNYQHQST WLTPLMVFAG KGRISDVCML LSFGADWSLK SKDGMTALEL AEAENQLEAA
0501: QIIREHADNS QSNSQQGQQL LDKYMATINP EQVDVSLIQQ LMRKICGDSE DGAILVFLPG WDDINKTRQR LLENPFFADS AKFDIICLHS MVPAGEQKKV
0601: FNRPPPGCRK IVLATNIAES AVTIDDVVYV IDSGRMKEKS YDPYNNVSTL QSSWVSKANA KQRQGRAGRC QPGICYHLYS RLRAASMPDF KVPEIKRMPV
0701: EELCLQVKIL DPNCKTNDFL QKLLDPPVDQ SIANALSILQ DIGALTPQEE LTELGEKFGH LPVHPLISKM LFFAVLVNCL DPALTLACAA DYKEPFTMPM
0801: SPVERQKAAA AKLELASLCG GDSDHLAVVA AFECWKNAKG RGLSAEFCSQ YFVSPSAMKM LDQMRSQLES ELKRHGIIPN DISSCSQNSR DPGILRAVLA
0901: VGLYPMVGRL CPAFGNNRRT IVETASGAKV RVHSLSNNFN LSSKKYDESL LVFDEITRGD GGMHIRNCTV ARDLPLLLIS TEIAVAPTGS SDSDDSNEEE
1001: EDDEEVAANT NEEVAANTNE EGMDIHKEES RRGAKMMSSP ENSVKLVVDR WLPFRTTALE VAQMYILRER LMASILFKVT HPREHLPPHL GASMHAIAGI
1101: LSYDGHAGLS CPPESMVPKH SRTEMYDTGG WEEKPNSFLN SLFWSLSLKE NKHPSHTNRN QQHNYNMAPT EAASIPRQQN YKQRNPKATN NTDSGKKKEK
1201: MFVNPTNRIN QPEAASTGKP SKHKSANSSG SSNKKENMPS DQAYGNKQHN TVPREAAAPM AKNQSSKKTK TRSGNNSDSG KKKEQYIPKR QREDKAEQK
0101: KCVSFPPGAD VILQELFTHY PPCDGDTAAT SFTKYSGNKG KQGQWKDDFF RKPQISSEEI LEKVASLSSR LKKDKALKEI TKLRSKLPIT SFKDAITSAV
0201: ESNQVILISG ETGCGKTTQV PQYLLDHMWS SKRETCKIVC TQPRRISAMS VSERISCERG ESIGENIGYK VRLQSKGGRH SSVVFCTNGI LLRVLVGKGS
0301: VSSVSDITHI IVDEIHERDC YSDFMLAIIR DLLPSNPHLR LILMSATLDA ERFSGYFGGC PVVRVPGFTY PVRTLYLEDV LSILKSGGDN HLSSTNLSIS
0401: DHKLDLTDED KLALDEAIIL AWTNDEFDAL LDLVSSRGSH EIYNYQHQST WLTPLMVFAG KGRISDVCML LSFGADWSLK SKDGMTALEL AEAENQLEAA
0501: QIIREHADNS QSNSQQGQQL LDKYMATINP EQVDVSLIQQ LMRKICGDSE DGAILVFLPG WDDINKTRQR LLENPFFADS AKFDIICLHS MVPAGEQKKV
0601: FNRPPPGCRK IVLATNIAES AVTIDDVVYV IDSGRMKEKS YDPYNNVSTL QSSWVSKANA KQRQGRAGRC QPGICYHLYS RLRAASMPDF KVPEIKRMPV
0701: EELCLQVKIL DPNCKTNDFL QKLLDPPVDQ SIANALSILQ DIGALTPQEE LTELGEKFGH LPVHPLISKM LFFAVLVNCL DPALTLACAA DYKEPFTMPM
0801: SPVERQKAAA AKLELASLCG GDSDHLAVVA AFECWKNAKG RGLSAEFCSQ YFVSPSAMKM LDQMRSQLES ELKRHGIIPN DISSCSQNSR DPGILRAVLA
0901: VGLYPMVGRL CPAFGNNRRT IVETASGAKV RVHSLSNNFN LSSKKYDESL LVFDEITRGD GGMHIRNCTV ARDLPLLLIS TEIAVAPTGS SDSDDSNEEE
1001: EDDEEVAANT NEEVAANTNE EGMDIHKEES RRGAKMMSSP ENSVKLVVDR WLPFRTTALE VAQMYILRER LMASILFKVT HPREHLPPHL GASMHAIAGI
1101: LSYDGHAGLS CPPESMVPKH SRTEMYDTGG WEEKPNSFLN SLFWSLSLKE NKHPSHTNRN QQHNYNMAPT EAASIPRQQN YKQRNPKATN NTDSGKKKEK
1201: MFVNPTNRIN QPEAASTGKP SKHKSANSSG SSNKKENMPS DQAYGNKQHN TVPREAAAPM AKNQSSKKTK TRSGNNSDSG KKKEQYIPKR QREDKAEQK
Arabidopsis Description
HVT1DExH-box ATP-dependent RNA helicase DExH6 [Source:UniProtKB/Swiss-Prot;Acc:F4INY4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.