Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra021665.1-P | Field mustard | nucleus | 97.93 | 98.08 |
| CDX97797 | Canola | nucleus | 94.8 | 95.97 |
| CDY10756 | Canola | nucleus | 73.07 | 87.7 |
| AT2G30800.1 | Thale cress | nucleus | 86.53 | 87.07 |
| CDY10215 | Canola | nucleus | 63.35 | 64.49 |
| VIT_12s0028g01050.t01 | Wine grape | nucleus | 55.01 | 58.41 |
| KRH73592 | Soybean | nucleus | 51.65 | 58.09 |
| KRH14525 | Soybean | nucleus | 51.19 | 57.47 |
| Solyc07g044930.2.1 | Tomato | nucleus | 52.64 | 57.38 |
| EES01523 | Sorghum | nucleus | 50.57 | 55.31 |
| TraesCS3A01G298900.1 | Wheat | nucleus | 49.66 | 55.23 |
| TraesCS3B01G337600.3 | Wheat | nucleus | 50.34 | 55.06 |
| Os01t0767700-01 | Rice | nucleus | 50.73 | 54.21 |
| GSMUA_Achr5P02110_001 | Banana | mitochondrion | 45.37 | 52.66 |
| TraesCS3D01G302800.2 | Wheat | plastid | 50.57 | 51.88 |
| HORVU3Hr1G074660.7 | Barley | plastid | 49.35 | 50.63 |
| Zm00001d012661_P002 | Maize | mitochondrion, plastid | 49.96 | 50.23 |
| CDX84588 | Canola | plastid, vacuole | 24.56 | 31.01 |
| CDX79642 | Canola | nucleus, vacuole | 24.56 | 31.01 |
| CDY68405 | Canola | nucleus | 15.53 | 30.3 |
| CDY17694 | Canola | nucleus | 25.4 | 29.25 |
| CDX74059 | Canola | nucleus | 5.89 | 29.17 |
| CDY57512 | Canola | nucleus | 25.25 | 29.07 |
| CDX83337 | Canola | cytosol | 16.07 | 29.05 |
| CDX95715 | Canola | cytosol | 16.07 | 28.97 |
| CDX76626 | Canola | nucleus | 15.84 | 28.83 |
| CDY11413 | Canola | nucleus | 15.76 | 28.69 |
| CDY34567 | Canola | nucleus | 14.46 | 28.51 |
| CDY36075 | Canola | nucleus | 14.46 | 28.04 |
| CDY11762 | Canola | nucleus | 15.07 | 27.98 |
| CDX90112 | Canola | nucleus | 15.07 | 27.94 |
| CDX78859 | Canola | nucleus | 14.92 | 27.94 |
| CDX93688 | Canola | plastid | 25.17 | 27.88 |
| CDY40601 | Canola | nucleus, plastid | 25.17 | 27.86 |
| CDX99466 | Canola | nucleus | 14.84 | 27.71 |
| CDY23338 | Canola | cytosol | 8.88 | 27.49 |
| CDX98799 | Canola | mitochondrion | 23.95 | 27.12 |
| CDX74061 | Canola | cytosol | 6.66 | 27.1 |
| CDX70187 | Canola | mitochondrion | 23.95 | 27.08 |
| CDX85017 | Canola | cytosol, plastid | 14.77 | 26.73 |
| CDY16154 | Canola | nucleus, plastid | 14.61 | 26.42 |
| CDY37024 | Canola | cytosol, mitochondrion | 6.5 | 26.23 |
| CDY02818 | Canola | nucleus | 13.31 | 26.2 |
| CDY32702 | Canola | nucleus | 13.62 | 25.72 |
| CDY60185 | Canola | nucleus | 15.99 | 24.33 |
| CDY40514 | Canola | nucleus | 15.84 | 24.04 |
| CDY39917 | Canola | nucleus | 21.88 | 20.24 |
| CDY29164 | Canola | nucleus | 22.04 | 20.22 |
| CDY32278 | Canola | endoplasmic reticulum | 16.14 | 20.21 |
| CDY26898 | Canola | nucleus | 16.14 | 20.21 |
| CDX83624 | Canola | nucleus | 16.53 | 19.37 |
| CDY13640 | Canola | nucleus | 16.6 | 19.29 |
| CDY23802 | Canola | nucleus | 7.5 | 18.67 |
| CDY63687 | Canola | nucleus, plastid | 15.3 | 18.02 |
| CDX85676 | Canola | nucleus | 16.76 | 17.55 |
| CDX91151 | Canola | nucleus | 16.76 | 17.53 |
| CDY48353 | Canola | nucleus | 14.54 | 15.54 |
| CDY34159 | Canola | nucleus | 14.46 | 15.28 |
| CDX91491 | Canola | nucleus | 0.69 | 14.29 |
| CDY51663 | Canola | nucleus | 0.69 | 14.29 |
| CDX78376 | Canola | plastid | 16.68 | 12.41 |
| CDX81170 | Canola | plastid | 16.6 | 12.31 |
| CDX69841 | Canola | plastid | 16.6 | 12.28 |
| CDX96996 | Canola | nucleus | 16.53 | 12.21 |
Protein Annotations
| Gene3D:1.20.120.1080 | Gene3D:1.25.40.20 | Gene3D:3.30.1370.50 | Gene3D:3.40.50.300 | MapMan:35.1 | GO:A0A078GWX0 |
| UniProt:A0A078GWX0 | InterPro:Ankyrin_rpt-contain_dom | InterPro:Ankyrin_rpt-contain_sf | EnsemblPlants:CDY29644 | ProteinID:CDY29644 | ProteinID:CDY29644.1 |
| ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | InterPro:DUF1605 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003824 | GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0016787 | EnsemblPlantsGene:GSBRNA2T00043403001 |
| InterPro:Helicase-assoc_dom | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001374 | InterPro:IPR001650 | InterPro:IPR014001 |
| InterPro:IPR020683 | InterPro:IPR036770 | InterPro:IPR036867 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 |
| PFAM:PF01424 | PFAM:PF04408 | PFAM:PF07717 | PFscan:PS50297 | PFscan:PS51061 | PFscan:PS51192 |
| PFscan:PS51194 | PANTHER:PTHR18934 | PANTHER:PTHR18934:SF100 | InterPro:R3H_DEXH_helicase | InterPro:R3H_dom | InterPro:R3H_dom_sf |
| SMART:SM00393 | SMART:SM00487 | SMART:SM00490 | SMART:SM00847 | SUPFAM:SSF48403 | SUPFAM:SSF52540 |
| SUPFAM:SSF82708 | UniParc:UPI0004EDE027 | SEG:seg | : | : | : |
Description
BnaA04g17830DBnaA04g17830D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GWX0]
Coordinates
chrLK032241:+:100989..108012
Molecular Weight (calculated)
145251.0 Da
IEP (calculated)
8.046
GRAVY (calculated)
-0.429
Length
1307 amino acids
Sequence
(BLAST)
(BLAST)
0001: MGNKRFRSEN AAGKPSSVEA TRIWASKVIE DFRASGNEVY TFEHNLSNTE RGVIHQMCRK MGIQSKSSGQ GNQRRLSIFK DMYRNGKNKG AKEKSNKEKL
0101: RCVSFPPEAD AILQELFTYY PPCDGDTAAT SFNKYVGKSG KQGQWKDDFF RKPQMSGDEI LDKVASLSSR LRNDRALQEI SKLRSRLPIT SFRDAITSAV
0201: ESNQVILISG ETGCGKTTQV PQYLLDHMWS SKRETCKIVC TQPRRISAMS VSERISCERG ESIGDNIGYK VRLQSKGGRH SSVVFCTNGI LLRVLVGKGS
0301: GSYVSDITHI IVDEIHERDC YSDFMLAIIS CFASICHIGA HILFLFFSVD LLPSNPHLRL ILMSATLDAE RFSGYFGGCP VVRVPGFTYP VRTLYLEDVL
0401: SILKSGGDNH LSSANLSIPD QKLDLTDEDK LALDEAIILA WTNDEFDALL DLVSSQGSPE IYNYQHQSTL LTPLMVFAGK GRISDVCMLL SFGADWNLKS
0501: KDGMTALELA ETENQLEAAQ IIREHAESSQ SNSQQGQQLL DKYMATINPE QVDVSLIQQL MRKICGDSED GGAILVFLPG WDDINKTRMR LLDSPIFSDG
0601: SKFNIICLHS MVPAGEQKKV FSRPPRGCRK IVLATNIAES AVTIDDVVYV IDSGRMKEKS YDPYSNVSTL QSSWVSKANA KQREGRAGRC QPGICYHLYS
0701: RLRAASMPDF KVPEIKRMPV EELCLQVKIL DPNCKTNDFL QKLLDPPVDQ SIANALSILQ DIGALTPEEE LTELGEKFGH LPVHPLISKM LFFAVLVNCL
0801: DPALTLACAA DYKEPFTMPM SPVERQKAAT AKLELASLCG GDSDHLAVVA AFDCWKNAKE RGLAAEFCSQ YFVSPSAMKM LDQMRSQLES ELKRHGIIPN
0901: DISSCSQNSR DPGILRAVLA VGLYPMVGRL CPSFGNNRRS LVETASGAKV RVHSLSNNFN LSSRKYDESL VVFDEITRGD GGMHIRNCTV ARDLPLLLVS
1001: TEIAVAPTES SEADDKEDEE EGMNIHKAES RREENMMSSP ENSVKLVVDR WLPFKTTALE VAQMYILRER LTASILFKVR HPRENLPPHL GASMYAIARI
1101: LSYDGHAGLS SPSESMRPKH SRTEMYETGG WEEKPNSFLN SLFWSLSLKE SKPSSSGHVN RNRQHGFNTV PTEVASMHTQ QNIKQTKSAI NGDPGKKKEK
1201: MYVNHTNGIH QPEAASIAKQ SKHRSGNGSG SGNKKENMPS DQVYGNQQPN SAPREGASPV ANHQISKKTK NRPANISDFG KKKTQYVPKI DLHKKEREDK
1301: VEQRGNA
0101: RCVSFPPEAD AILQELFTYY PPCDGDTAAT SFNKYVGKSG KQGQWKDDFF RKPQMSGDEI LDKVASLSSR LRNDRALQEI SKLRSRLPIT SFRDAITSAV
0201: ESNQVILISG ETGCGKTTQV PQYLLDHMWS SKRETCKIVC TQPRRISAMS VSERISCERG ESIGDNIGYK VRLQSKGGRH SSVVFCTNGI LLRVLVGKGS
0301: GSYVSDITHI IVDEIHERDC YSDFMLAIIS CFASICHIGA HILFLFFSVD LLPSNPHLRL ILMSATLDAE RFSGYFGGCP VVRVPGFTYP VRTLYLEDVL
0401: SILKSGGDNH LSSANLSIPD QKLDLTDEDK LALDEAIILA WTNDEFDALL DLVSSQGSPE IYNYQHQSTL LTPLMVFAGK GRISDVCMLL SFGADWNLKS
0501: KDGMTALELA ETENQLEAAQ IIREHAESSQ SNSQQGQQLL DKYMATINPE QVDVSLIQQL MRKICGDSED GGAILVFLPG WDDINKTRMR LLDSPIFSDG
0601: SKFNIICLHS MVPAGEQKKV FSRPPRGCRK IVLATNIAES AVTIDDVVYV IDSGRMKEKS YDPYSNVSTL QSSWVSKANA KQREGRAGRC QPGICYHLYS
0701: RLRAASMPDF KVPEIKRMPV EELCLQVKIL DPNCKTNDFL QKLLDPPVDQ SIANALSILQ DIGALTPEEE LTELGEKFGH LPVHPLISKM LFFAVLVNCL
0801: DPALTLACAA DYKEPFTMPM SPVERQKAAT AKLELASLCG GDSDHLAVVA AFDCWKNAKE RGLAAEFCSQ YFVSPSAMKM LDQMRSQLES ELKRHGIIPN
0901: DISSCSQNSR DPGILRAVLA VGLYPMVGRL CPSFGNNRRS LVETASGAKV RVHSLSNNFN LSSRKYDESL VVFDEITRGD GGMHIRNCTV ARDLPLLLVS
1001: TEIAVAPTES SEADDKEDEE EGMNIHKAES RREENMMSSP ENSVKLVVDR WLPFKTTALE VAQMYILRER LTASILFKVR HPRENLPPHL GASMYAIARI
1101: LSYDGHAGLS SPSESMRPKH SRTEMYETGG WEEKPNSFLN SLFWSLSLKE SKPSSSGHVN RNRQHGFNTV PTEVASMHTQ QNIKQTKSAI NGDPGKKKEK
1201: MYVNHTNGIH QPEAASIAKQ SKHRSGNGSG SGNKKENMPS DQVYGNQQPN SAPREGASPV ANHQISKKTK NRPANISDFG KKKTQYVPKI DLHKKEREDK
1301: VEQRGNA
0001: MGNKRFRSDN NAGKPTSVEA TRIWATKVIE DFRASGNEVY TFEHNLSNNE RGVIHQMCRK MGIQSKSSGR GEQRRLSIFK SRHKNGNKNE ANEKSNKEKL
0101: KCVSFPPGAD VILQELFTHY PPCDGDTAAT SFTKYSGNKG KQGQWKDDFF RKPQISSEEI LEKVASLSSR LKKDKALKEI TKLRSKLPIT SFKDAITSAV
0201: ESNQVILISG ETGCGKTTQV PQYLLDHMWS SKRETCKIVC TQPRRISAMS VSERISCERG ESIGENIGYK VRLQSKGGRH SSVVFCTNGI LLRVLVGKGS
0301: VSSVSDITHI IVDEIHERDC YSDFMLAIIR DLLPSNPHLR LILMSATLDA ERFSGYFGGC PVVRVPGFTY PVRTLYLEDV LSILKSGGDN HLSSTNLSIS
0401: DHKLDLTDED KLALDEAIIL AWTNDEFDAL LDLVSSRGSH EIYNYQHQST WLTPLMVFAG KGRISDVCML LSFGADWSLK SKDGMTALEL AEAENQLEAA
0501: QIIREHADNS QSNSQQGQQL LDKYMATINP EQVDVSLIQQ LMRKICGDSE DGAILVFLPG WDDINKTRQR LLENPFFADS AKFDIICLHS MVPAGEQKKV
0601: FNRPPPGCRK IVLATNIAES AVTIDDVVYV IDSGRMKEKS YDPYNNVSTL QSSWVSKANA KQRQGRAGRC QPGICYHLYS RLRAASMPDF KVPEIKRMPV
0701: EELCLQVKIL DPNCKTNDFL QKLLDPPVDQ SIANALSILQ DIGALTPQEE LTELGEKFGH LPVHPLISKM LFFAVLVNCL DPALTLACAA DYKEPFTMPM
0801: SPVERQKAAA AKLELASLCG GDSDHLAVVA AFECWKNAKG RGLSAEFCSQ YFVSPSAMKM LDQMRSQLES ELKRHGIIPN DISSCSQNSR DPGILRAVLA
0901: VGLYPMVGRL CPAFGNNRRT IVETASGAKV RVHSLSNNFN LSSKKYDESL LVFDEITRGD GGMHIRNCTV ARDLPLLLIS TEIAVAPTGS SDSDDSNEEE
1001: EDDEEVAANT NEEVAANTNE EGMDIHKEES RRGAKMMSSP ENSVKLVVDR WLPFRTTALE VAQMYILRER LMASILFKVT HPREHLPPHL GASMHAIAGI
1101: LSYDGHAGLS CPPESMVPKH SRTEMYDTGG WEEKPNSFLN SLFWSLSLKE NKHPSHTNRN QQHNYNMAPT EAASIPRQQN YKQRNPKATN NTDSGKKKEK
1201: MFVNPTNRIN QPEAASTGKP SKHKSANSSG SSNKKENMPS DQAYGNKQHN TVPREAAAPM AKNQSSKKTK TRSGNNSDSG KKKEQYIPKR QREDKAEQK
0101: KCVSFPPGAD VILQELFTHY PPCDGDTAAT SFTKYSGNKG KQGQWKDDFF RKPQISSEEI LEKVASLSSR LKKDKALKEI TKLRSKLPIT SFKDAITSAV
0201: ESNQVILISG ETGCGKTTQV PQYLLDHMWS SKRETCKIVC TQPRRISAMS VSERISCERG ESIGENIGYK VRLQSKGGRH SSVVFCTNGI LLRVLVGKGS
0301: VSSVSDITHI IVDEIHERDC YSDFMLAIIR DLLPSNPHLR LILMSATLDA ERFSGYFGGC PVVRVPGFTY PVRTLYLEDV LSILKSGGDN HLSSTNLSIS
0401: DHKLDLTDED KLALDEAIIL AWTNDEFDAL LDLVSSRGSH EIYNYQHQST WLTPLMVFAG KGRISDVCML LSFGADWSLK SKDGMTALEL AEAENQLEAA
0501: QIIREHADNS QSNSQQGQQL LDKYMATINP EQVDVSLIQQ LMRKICGDSE DGAILVFLPG WDDINKTRQR LLENPFFADS AKFDIICLHS MVPAGEQKKV
0601: FNRPPPGCRK IVLATNIAES AVTIDDVVYV IDSGRMKEKS YDPYNNVSTL QSSWVSKANA KQRQGRAGRC QPGICYHLYS RLRAASMPDF KVPEIKRMPV
0701: EELCLQVKIL DPNCKTNDFL QKLLDPPVDQ SIANALSILQ DIGALTPQEE LTELGEKFGH LPVHPLISKM LFFAVLVNCL DPALTLACAA DYKEPFTMPM
0801: SPVERQKAAA AKLELASLCG GDSDHLAVVA AFECWKNAKG RGLSAEFCSQ YFVSPSAMKM LDQMRSQLES ELKRHGIIPN DISSCSQNSR DPGILRAVLA
0901: VGLYPMVGRL CPAFGNNRRT IVETASGAKV RVHSLSNNFN LSSKKYDESL LVFDEITRGD GGMHIRNCTV ARDLPLLLIS TEIAVAPTGS SDSDDSNEEE
1001: EDDEEVAANT NEEVAANTNE EGMDIHKEES RRGAKMMSSP ENSVKLVVDR WLPFRTTALE VAQMYILRER LMASILFKVT HPREHLPPHL GASMHAIAGI
1101: LSYDGHAGLS CPPESMVPKH SRTEMYDTGG WEEKPNSFLN SLFWSLSLKE NKHPSHTNRN QQHNYNMAPT EAASIPRQQN YKQRNPKATN NTDSGKKKEK
1201: MFVNPTNRIN QPEAASTGKP SKHKSANSSG SSNKKENMPS DQAYGNKQHN TVPREAAAPM AKNQSSKKTK TRSGNNSDSG KKKEQYIPKR QREDKAEQK
Arabidopsis Description
HVT1DExH-box ATP-dependent RNA helicase DExH6 [Source:UniProtKB/Swiss-Prot;Acc:F4INY4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.