Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY34159 | Canola | nucleus | 96.48 | 95.39 |
| Bra032998.1-P | Field mustard | nucleus | 96.08 | 94.99 |
| AT1G33390.2 | Thale cress | nucleus | 75.63 | 74.78 |
| VIT_07s0005g00860.t01 | Wine grape | nucleus | 55.11 | 51.02 |
| GSMUA_Achr3P08220_001 | Banana | nucleus | 42.52 | 48.37 |
| PGSC0003DMT400000297 | Potato | nucleus | 52.74 | 48.28 |
| Solyc01g095710.2.1 | Tomato | nucleus | 52.82 | 48.17 |
| KRH76262 | Soybean | nucleus | 50.86 | 47.09 |
| KRH65271 | Soybean | nucleus | 50.7 | 46.9 |
| Os02t0736600-01 | Rice | nucleus | 48.32 | 46.46 |
| KXG30805 | Sorghum | nucleus | 47.83 | 45.85 |
| Zm00001d017967_P003 | Maize | nucleus | 47.34 | 45.27 |
| HORVU0Hr1G039590.6 | Barley | nucleus | 46.85 | 44.52 |
| TraesCS6B01G206600.1 | Wheat | nucleus | 46.52 | 44.25 |
| TraesCS6A01G178200.1 | Wheat | nucleus | 43.74 | 43.53 |
| TraesCS6B01G329000.1 | Wheat | nucleus | 46.36 | 42.99 |
| TraesCS6D01G279300.1 | Wheat | nucleus | 46.61 | 42.99 |
| TraesCS6A01G299400.2 | Wheat | nucleus | 46.61 | 42.99 |
| CDX74061 | Canola | cytosol | 9.73 | 37.07 |
| CDX74059 | Canola | nucleus | 7.77 | 35.98 |
| CDY68405 | Canola | nucleus | 18.97 | 34.63 |
| CDY36075 | Canola | nucleus | 18.81 | 34.12 |
| CDY34567 | Canola | nucleus | 18.4 | 33.94 |
| CDY11413 | Canola | nucleus | 18.97 | 32.31 |
| CDY37024 | Canola | cytosol, mitochondrion | 8.5 | 32.1 |
| CDX76626 | Canola | nucleus | 18.81 | 32.03 |
| CDY11762 | Canola | nucleus | 18.4 | 31.96 |
| CDY02818 | Canola | nucleus | 17.25 | 31.78 |
| CDX90112 | Canola | nucleus | 18.32 | 31.77 |
| CDX95715 | Canola | cytosol | 18.81 | 31.72 |
| CDX83337 | Canola | cytosol | 18.72 | 31.67 |
| CDX85017 | Canola | cytosol, plastid | 18.48 | 31.3 |
| CDY32702 | Canola | nucleus | 17.66 | 31.21 |
| CDY16154 | Canola | nucleus, plastid | 18.23 | 30.84 |
| CDX99466 | Canola | nucleus | 17.5 | 30.57 |
| CDX78859 | Canola | nucleus | 17.42 | 30.52 |
| CDY23338 | Canola | cytosol | 10.47 | 30.33 |
| CDY40514 | Canola | nucleus | 20.85 | 29.62 |
| CDY60185 | Canola | nucleus | 20.61 | 29.34 |
| CDY51663 | Canola | nucleus | 1.39 | 26.98 |
| CDX91491 | Canola | nucleus | 1.31 | 25.4 |
| CDY23802 | Canola | nucleus | 10.87 | 25.33 |
| CDY26898 | Canola | nucleus | 21.5 | 25.19 |
| CDY32278 | Canola | endoplasmic reticulum | 21.42 | 25.1 |
| CDX83624 | Canola | nucleus | 21.83 | 23.95 |
| CDY13640 | Canola | nucleus | 21.83 | 23.73 |
| CDX85676 | Canola | nucleus | 21.42 | 20.99 |
| CDX91151 | Canola | nucleus | 21.34 | 20.9 |
| CDX79642 | Canola | nucleus, vacuole | 17.01 | 20.1 |
| CDX84588 | Canola | plastid, vacuole | 17.01 | 20.1 |
| CDY57512 | Canola | nucleus | 18.15 | 19.56 |
| CDY17694 | Canola | nucleus | 17.99 | 19.38 |
| CDX93688 | Canola | plastid | 18.32 | 18.98 |
| CDY40601 | Canola | nucleus, plastid | 18.32 | 18.97 |
| CDX70187 | Canola | mitochondrion | 17.25 | 18.25 |
| CDX98799 | Canola | mitochondrion | 17.17 | 18.2 |
| CDY10756 | Canola | nucleus | 15.7 | 17.63 |
| CDY39917 | Canola | nucleus | 17.58 | 15.22 |
| CDY10215 | Canola | nucleus | 15.78 | 15.03 |
| CDY29164 | Canola | nucleus | 17.42 | 14.96 |
| CDX97797 | Canola | nucleus | 15.62 | 14.79 |
| CDY29644 | Canola | nucleus | 15.54 | 14.54 |
| CDY63687 | Canola | nucleus, plastid | 12.26 | 13.51 |
| CDX78376 | Canola | plastid | 18.4 | 12.81 |
| CDX81170 | Canola | plastid | 18.07 | 12.54 |
| CDX69841 | Canola | plastid | 17.91 | 12.39 |
| CDX96996 | Canola | nucleus | 17.66 | 12.21 |
| Os02t0736800-01 | Rice | mitochondrion | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.20.120.1080 | Gene3D:3.40.50.300 | MapMan:35.1 | GO:A0A078IGS1 | UniProt:A0A078IGS1 | EnsemblPlants:CDY48353 |
| ProteinID:CDY48353 | ProteinID:CDY48353.1 | ncoils:Coil | InterPro:DNA/RNA_helicase_DEAH_CS | InterPro:DUF1605 | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0016787 |
| EnsemblPlantsGene:GSBRNA2T00089335001 | InterPro:Helicase-assoc_dom | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 |
| InterPro:P-loop_NTPase | PFAM:PF00271 | PFAM:PF04408 | PFAM:PF07717 | ScanProsite:PS00690 | PFscan:PS51192 |
| PFscan:PS51194 | PANTHER:PTHR18934 | PANTHER:PTHR18934:SF99 | SMART:SM00487 | SMART:SM00490 | SMART:SM00847 |
| SUPFAM:SSF52540 | UniParc:UPI0004EF4398 | SEG:seg | : | : | : |
Description
BnaCnng16150DBnaCnng16150D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IGS1]
Coordinates
chrLK032767:-:84284..88587
Molecular Weight (calculated)
138443.0 Da
IEP (calculated)
5.963
GRAVY (calculated)
-0.617
Length
1223 amino acids
Sequence
(BLAST)
(BLAST)
0001: MKGEDSNLDI MPPRKKKNTG PNKMGDKLNL KKTTLSKSQK RKLKKIEEEK EKELLSAKTA ELLDKYKISE DVSLLLQSSK AIGRSDTKLE KRRRPMQLSK
0101: AGVLSDEPVK ENDDSDSFMD DEPTTPVALQ TDSDQRIHDN ELDSKVIISA EEVREEDETK IREEDETMFK NLQTTRRDDD YEEGLQRMDE SEDVTPKGPA
0201: FVVHVSRPAE VEETRKELPI IMMEQEIMEA INYHPTVIIS GKTGCGKTTQ VPQFLYEAGY GSKQVSSRSG VIGITQPRRV AVLATAKRVA HELGVRLGQE
0301: VGFQVRYDKK IGENSAIKFM TDGILVREIK EDLLLMRYSV IILDEAHERS LNTDILIGML TRSIKMRQEL YRDQQKHLQA GGTIASKDVI WPLKLILMSA
0401: TLRVEDFVSG QRLFPKPPPV IEVPTRQYPV TIHFSKRTDE FNYMGEAYKK VMSIHKKLPQ GGILVFVTGQ REVENLCEKL RKSSKELKEK KLDDDDGDGS
0501: FGGVDMKEIS EAFDDASNTQ GYRFNSFGED PYETGNGEYD DFDEENMYES DEESDWETID DDGGLASSLV EDGKKVDALR AAFKALADKK GSESTETTTT
0601: STEAEEEKKP FTPGKLRVLP LYAMLSPDAQ LRVFAEVEEG ERLVVVATNV AETSLTIPGI KYVVDTGRAK AKSYDIKTGM DAYEVDWISQ ASASQRAGRA
0701: GRTGPGHCYR LYSSTVFSNT FEESSPPEIT RVPIDGVVLQ LKSMNIPKVE NFPFPTPPEP SSIKQSERCL KALEALDSDG RLTPLGNAMS NYPMSPRHSR
0801: MLLTVIQMLK EARNYSRANL VLAYAVAAAA ALSLENPLIM QFGEEKQNED REDDKQRKKD RKDKIKAARD RFSNPSSDAL TVAYVLHSYE VAEDGPDLFC
0901: ETNGLNMKTM NEMSKLKADL LRLVFRSSET ENLYTWTHGT IQDVEESWRN AALSKTPLLQ MEEELLGEAI CAGWADRVAR KTKSTQYQAC AVQEEPVYLH
1001: RWSSLINSAP ELLVYSELLR TNKPYMHGAT RVKPEWLVKH AKSLCVFSTP LKDPKPYYSR ELDRVFCWVV PSFGPHLWEL PAHSEAVNDD MYRAAVFGYA
1101: LLRGEVLPCL KSARALMAGK PETLLEREGW GLERVGSLVK ALKEKKIDSL GSLKKRWEQN PNVLYPEIEA WFQKKSRHHV KEMWQRMLQE AKVNVPGKLK
1201: RSVIPIERSD EKLKRPRAKV CFE
0101: AGVLSDEPVK ENDDSDSFMD DEPTTPVALQ TDSDQRIHDN ELDSKVIISA EEVREEDETK IREEDETMFK NLQTTRRDDD YEEGLQRMDE SEDVTPKGPA
0201: FVVHVSRPAE VEETRKELPI IMMEQEIMEA INYHPTVIIS GKTGCGKTTQ VPQFLYEAGY GSKQVSSRSG VIGITQPRRV AVLATAKRVA HELGVRLGQE
0301: VGFQVRYDKK IGENSAIKFM TDGILVREIK EDLLLMRYSV IILDEAHERS LNTDILIGML TRSIKMRQEL YRDQQKHLQA GGTIASKDVI WPLKLILMSA
0401: TLRVEDFVSG QRLFPKPPPV IEVPTRQYPV TIHFSKRTDE FNYMGEAYKK VMSIHKKLPQ GGILVFVTGQ REVENLCEKL RKSSKELKEK KLDDDDGDGS
0501: FGGVDMKEIS EAFDDASNTQ GYRFNSFGED PYETGNGEYD DFDEENMYES DEESDWETID DDGGLASSLV EDGKKVDALR AAFKALADKK GSESTETTTT
0601: STEAEEEKKP FTPGKLRVLP LYAMLSPDAQ LRVFAEVEEG ERLVVVATNV AETSLTIPGI KYVVDTGRAK AKSYDIKTGM DAYEVDWISQ ASASQRAGRA
0701: GRTGPGHCYR LYSSTVFSNT FEESSPPEIT RVPIDGVVLQ LKSMNIPKVE NFPFPTPPEP SSIKQSERCL KALEALDSDG RLTPLGNAMS NYPMSPRHSR
0801: MLLTVIQMLK EARNYSRANL VLAYAVAAAA ALSLENPLIM QFGEEKQNED REDDKQRKKD RKDKIKAARD RFSNPSSDAL TVAYVLHSYE VAEDGPDLFC
0901: ETNGLNMKTM NEMSKLKADL LRLVFRSSET ENLYTWTHGT IQDVEESWRN AALSKTPLLQ MEEELLGEAI CAGWADRVAR KTKSTQYQAC AVQEEPVYLH
1001: RWSSLINSAP ELLVYSELLR TNKPYMHGAT RVKPEWLVKH AKSLCVFSTP LKDPKPYYSR ELDRVFCWVV PSFGPHLWEL PAHSEAVNDD MYRAAVFGYA
1101: LLRGEVLPCL KSARALMAGK PETLLEREGW GLERVGSLVK ALKEKKIDSL GSLKKRWEQN PNVLYPEIEA WFQKKSRHHV KEMWQRMLQE AKVNVPGKLK
1201: RSVIPIERSD EKLKRPRAKV CFE
0001: MASVVGDDCN LDVMPPRKKK NKGSNKMQDK LNSNNNTGSK KSRKRKLNSN VNTVACKSQK RKLKKLEEDK EKEILFSKTA ELLDKYKISE DVSSLLQSSK
0101: VIGRSATKLE KRRRAMQLSK AGVETEHSDE SVEQNDNDDD SCMDEPTTPE HVEIETPTFV TDSEQQLVHA DLMISAEESS SKLEVDDTVD MIPLTTCRDD
0201: DEDSMDGLIE NEDVTVQGPR VPAFVVHVSR PAEVEETRKD LPIVMMEQEI MEAINRHPAV IISGQTGCGK TTQVPQFLYE AGFGSKQFSS RSGIIGITQP
0301: RRVAVLATAK RVAFELGVRL GKEVGFQVRY DKKIGENSSI KFMTDGILLR EIQNDFLLRR YSVIILDEAH ERSLNTDILI GMLTRVIKIR QEYYEEQQKS
0401: LQSGGTVTSE CQITPLKLIL MSATLRVEDF VSGKRLFPNI PPLIEVPTRQ YPVTIHFSKK TEIVDYIGEA YKKVMSIHKK LPQGGILVFV TGQREVDYLC
0501: EKLRKSSKEL VVQAAKRDAY VKKKCDDGSF GGVDMKEIAE AFDDDSNNQN SRFSSHGEDP SDIGDGNYDD DFEEEDMYES DEDRDWETVD DGFASSFVEE
0601: GKLDALRAAF NALADKNGSV SAEPAKSIAA ENQEAEQVKN KFSPGKLRVL PLYAMLSPAA QLRVFEEVEK EERLVVVATN VAETSLTIPG IKYVVDTGRV
0701: KVKNYDSKTG MESYEVDWIS QASASQRAGR AGRTGPGHCY RLYSSAVFSN IFEESSLPEI MKVPVDGVIL LMKSMNIPKV ENFPFPTPPE PSAIREAERC
0801: LKALEALDSN GGLTPLGKAM SHYPMSPRHS RMLLTVIQML KETRNYSRAN LILGYAVAAV AALSLPNPLI MEFEGEKKNE SKDADKTVKQ EDKQRKKDRK
0901: EKIKAARDRF SNPSSDALTV AYALHSFEVS ENGMGFCEAN GLHLKTMDEM SKLKDQLLRL VFNCCKPSET EDSFSWTHGT IQDVEKSWRI TTSTSSKTPL
1001: LQNEEELLGE AICAGWADRV ARKTRATEYQ ACAVQEPVFL HRWSSLINSA PELLVYSELL LTNRPYMHGA TRVRPEWLVK HAKSLCVFSA PLKDPKPYYS
1101: SEEDRVLCWV VPSFGPHNWE LPAHSVAITE DRDRAAAFGC ALLQGEVLTC LKSFRALLAG KPETLLEREA WGLERVGSLV MVLTEKKIDT LESLRKNWEQ
1201: NPNVLYSEIE VWFQKKFRHR VKDLWQTMLK EAHVRRS
0101: VIGRSATKLE KRRRAMQLSK AGVETEHSDE SVEQNDNDDD SCMDEPTTPE HVEIETPTFV TDSEQQLVHA DLMISAEESS SKLEVDDTVD MIPLTTCRDD
0201: DEDSMDGLIE NEDVTVQGPR VPAFVVHVSR PAEVEETRKD LPIVMMEQEI MEAINRHPAV IISGQTGCGK TTQVPQFLYE AGFGSKQFSS RSGIIGITQP
0301: RRVAVLATAK RVAFELGVRL GKEVGFQVRY DKKIGENSSI KFMTDGILLR EIQNDFLLRR YSVIILDEAH ERSLNTDILI GMLTRVIKIR QEYYEEQQKS
0401: LQSGGTVTSE CQITPLKLIL MSATLRVEDF VSGKRLFPNI PPLIEVPTRQ YPVTIHFSKK TEIVDYIGEA YKKVMSIHKK LPQGGILVFV TGQREVDYLC
0501: EKLRKSSKEL VVQAAKRDAY VKKKCDDGSF GGVDMKEIAE AFDDDSNNQN SRFSSHGEDP SDIGDGNYDD DFEEEDMYES DEDRDWETVD DGFASSFVEE
0601: GKLDALRAAF NALADKNGSV SAEPAKSIAA ENQEAEQVKN KFSPGKLRVL PLYAMLSPAA QLRVFEEVEK EERLVVVATN VAETSLTIPG IKYVVDTGRV
0701: KVKNYDSKTG MESYEVDWIS QASASQRAGR AGRTGPGHCY RLYSSAVFSN IFEESSLPEI MKVPVDGVIL LMKSMNIPKV ENFPFPTPPE PSAIREAERC
0801: LKALEALDSN GGLTPLGKAM SHYPMSPRHS RMLLTVIQML KETRNYSRAN LILGYAVAAV AALSLPNPLI MEFEGEKKNE SKDADKTVKQ EDKQRKKDRK
0901: EKIKAARDRF SNPSSDALTV AYALHSFEVS ENGMGFCEAN GLHLKTMDEM SKLKDQLLRL VFNCCKPSET EDSFSWTHGT IQDVEKSWRI TTSTSSKTPL
1001: LQNEEELLGE AICAGWADRV ARKTRATEYQ ACAVQEPVFL HRWSSLINSA PELLVYSELL LTNRPYMHGA TRVRPEWLVK HAKSLCVFSA PLKDPKPYYS
1101: SEEDRVLCWV VPSFGPHNWE LPAHSVAITE DRDRAAAFGC ALLQGEVLTC LKSFRALLAG KPETLLEREA WGLERVGSLV MVLTEKKIDT LESLRKNWEQ
1201: NPNVLYSEIE VWFQKKFRHR VKDLWQTMLK EAHVRRS
Arabidopsis Description
FAS4FAS4 [Source:UniProtKB/TrEMBL;Acc:A0A178WIP4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.