Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG30805 | Sorghum | nucleus | 92.73 | 92.95 |
| Os02t0736600-01 | Rice | nucleus | 74.67 | 75.08 |
| TraesCS6B01G206600.1 | Wheat | nucleus | 73.34 | 72.94 |
| HORVU0Hr1G039590.6 | Barley | nucleus | 73.03 | 72.57 |
| TraesCS6A01G178200.1 | Wheat | nucleus | 68.88 | 71.68 |
| TraesCS6D01G279300.1 | Wheat | nucleus | 72.09 | 69.53 |
| TraesCS6A01G299400.2 | Wheat | nucleus | 71.85 | 69.31 |
| TraesCS6B01G329000.1 | Wheat | nucleus | 71.38 | 69.22 |
| GSMUA_Achr3P08220_001 | Banana | nucleus | 51.13 | 60.84 |
| VIT_07s0005g00860.t01 | Wine grape | nucleus | 52.23 | 50.57 |
| Solyc01g095710.2.1 | Tomato | nucleus | 51.52 | 49.14 |
| PGSC0003DMT400000297 | Potato | nucleus | 50.74 | 48.58 |
| AT1G33390.2 | Thale cress | nucleus | 46.68 | 48.26 |
| CDY48353 | Canola | nucleus | 45.27 | 47.34 |
| KRH76262 | Soybean | nucleus | 48.71 | 47.16 |
| CDY34159 | Canola | nucleus | 45.58 | 47.13 |
| KRH65271 | Soybean | nucleus | 48.55 | 46.97 |
| Bra032998.1-P | Field mustard | nucleus | 45.11 | 46.65 |
| Zm00001d049980_P001 | Maize | plasma membrane | 18.06 | 33.09 |
| Zm00001d028923_P002 | Maize | nucleus | 18.3 | 32.45 |
| Zm00001d045147_P015 | Maize | nucleus | 17.9 | 32.44 |
| Zm00001d047601_P006 | Maize | nucleus | 18.45 | 30.53 |
| Zm00001d011963_P002 | Maize | plasma membrane | 17.2 | 30.51 |
| Zm00001d045376_P001 | Maize | cytosol | 6.65 | 25.76 |
| Zm00001d015893_P001 | Maize | nucleus, plasma membrane | 21.42 | 22.17 |
| Zm00001d039380_P001 | Maize | nucleus | 15.32 | 20.7 |
| Zm00001d032735_P001 | Maize | plastid | 16.34 | 20.21 |
| Zm00001d031581_P002 | Maize | nucleus | 20.64 | 19.94 |
| Zm00001d006459_P003 | Maize | plastid | 20.33 | 19.32 |
| Zm00001d034013_P002 | Maize | golgi, mitochondrion, vacuole | 17.67 | 18.85 |
| Zm00001d019056_P001 | Maize | nucleus | 2.74 | 17.5 |
| Zm00001d040082_P003 | Maize | plastid | 17.2 | 15.64 |
| Zm00001d003655_P006 | Maize | nucleus, plastid | 17.04 | 15.31 |
| Zm00001d012661_P002 | Maize | mitochondrion, plastid | 15.09 | 14.85 |
| Zm00001d022176_P002 | Maize | nucleus | 17.67 | 12.9 |
| Os02t0736800-01 | Rice | mitochondrion | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.20.120.1080 | EntrezGene:103627696 | Gene3D:3.40.50.300 | MapMan:35.1 | UniProt:A0A1D6HJM8 | ProteinID:AQK74665.1 |
| ProteinID:AQK74666.1 | ProteinID:AQK74668.1 | ProteinID:AQK74670.1 | ProteinID:AQK74671.1 | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom |
| InterPro:DNA/RNA_helicase_DEAH_CS | InterPro:DUF1605 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 |
| GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0016787 | InterPro:Helicase-assoc_dom | InterPro:Helicase_ATP-bd |
| InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 |
| PFAM:PF04408 | PFAM:PF07717 | ScanProsite:PS00690 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR18934 |
| PANTHER:PTHR18934:SF99 | SMART:SM00487 | SMART:SM00490 | SMART:SM00847 | SUPFAM:SSF52540 | UniParc:UPI0004DEB5F0 |
| EnsemblPlantsGene:Zm00001d017967 | EnsemblPlants:Zm00001d017967_P003 | EnsemblPlants:Zm00001d017967_T003 | SEG:seg | : | : |
Description
ATP-dependent RNA helicase DEAH13
Coordinates
chr5:+:210992943..211000013
Molecular Weight (calculated)
143956.0 Da
IEP (calculated)
8.233
GRAVY (calculated)
-0.472
Length
1279 amino acids
Sequence
(BLAST)
(BLAST)
0001: MEDSNALILP CKRKNKAQVK AKDGKKAKKE DPKMSKTKLK KLQKLEEEKK KKLLQAKSIE VLQKHKISED AYSLLHASGT IGQAETLKEK RRRAVQFSKA
0101: GLDVPEELSL FKKSGGTKVP ENSDVGEQVS PLKFVEPAPI VDSGRECNNK MKDLVKAIEC QPIMGFGAGI PEPETEEPSD DAHMLTNQKI QLSIPSCSGA
0201: ELDLQGKELG QGQHSVQECI NPPIVVPVSR LHEVEKARRD LPIIMMEQEI MEAIYENSVV ILCGETGCGK TTQVPQFLYE AGFGTSDRAD RKGMIGITQP
0301: RRVAVHATAK RVSYELGLKL GREVGFQVRH DRKVGSECSI KFMTDGILLR EIQGDFLLKR YSVIILDEAH ERSLNTDILI GMLSRIIKIR KDLYAKQQEK
0401: LRSGFKIKPE DKISQLKVVL MSATLQLKDF ISNRRLFGVI PPAVKVPVRQ FPVSVHFSKR THDDYLGLAY KKVMSIHKRL PPGGILVFVT GQREVEYLCK
0501: KLRRASKVQT AKNPGKTDGE DNGPCPKVDE KEIFEAYDID RDEPEHRYDM FSSYDDDGMY DDDGMNVETN IDSSDNETES EMDTETDDEE SVTIETTEED
0601: VPVLAFLKDA ESSSALKASF GALSGIPNVL ESVEELSDAK CEEKTSTSLR CFSKCTEHKP VSHGRLRVLP LYAKLSASQQ LQVFEDVPEG ERLVVVATNV
0701: AETSLTIPGI KYVVDTGKEK VKNYDHATGM SSYDVQWISK ASASQRAGRA GRTGPGHCYR LYSAAAYGKD DLFPEFAEPQ IKKIPVEGVV LMLKFMSIDK
0801: VENFPFPTPP NKESLVEAER CLKTLEALHS DGKLTPMGKA MAQYPMSPRH SRLLLTVIKN LKNKQQGFAR SNFILGYAAA AASGLNFTNP FLKQLDECDT
0901: YGESVENTNL EANGPWERKR QKKLKAVVRE AREKFSNPSS DALTIARALQ FFELSENPVE FCRANSLHLK TMEEMSKLRK QLLQLIFRHS KWCEEFAWNS
1001: GDSAEVERAW RNEPSILQLN EEELLGQGIC AGWADRVARR IHTYLKPSED DRKVRAVRYQ SCALDDTIYL HRSSSVAQVA PELVVYSELL STKRLYMHGV
1101: TTVKPGWLLK YASSLCTFSA PLEDPKPYYD PLNDQVYCYV SPVFSRHNWQ LPLHSLPIKD GASRLQVFAC ALLKGDVLPC LRDAKDFLAL SPSAVLGPAR
1201: QRRVGDLLSR MKIGPKLVDS RAALRGVWNF DPGFLYPELK LWYQDRFHDQ FDLVWEQMHQ QVLLEGRKLF PKRSKKVKG
0101: GLDVPEELSL FKKSGGTKVP ENSDVGEQVS PLKFVEPAPI VDSGRECNNK MKDLVKAIEC QPIMGFGAGI PEPETEEPSD DAHMLTNQKI QLSIPSCSGA
0201: ELDLQGKELG QGQHSVQECI NPPIVVPVSR LHEVEKARRD LPIIMMEQEI MEAIYENSVV ILCGETGCGK TTQVPQFLYE AGFGTSDRAD RKGMIGITQP
0301: RRVAVHATAK RVSYELGLKL GREVGFQVRH DRKVGSECSI KFMTDGILLR EIQGDFLLKR YSVIILDEAH ERSLNTDILI GMLSRIIKIR KDLYAKQQEK
0401: LRSGFKIKPE DKISQLKVVL MSATLQLKDF ISNRRLFGVI PPAVKVPVRQ FPVSVHFSKR THDDYLGLAY KKVMSIHKRL PPGGILVFVT GQREVEYLCK
0501: KLRRASKVQT AKNPGKTDGE DNGPCPKVDE KEIFEAYDID RDEPEHRYDM FSSYDDDGMY DDDGMNVETN IDSSDNETES EMDTETDDEE SVTIETTEED
0601: VPVLAFLKDA ESSSALKASF GALSGIPNVL ESVEELSDAK CEEKTSTSLR CFSKCTEHKP VSHGRLRVLP LYAKLSASQQ LQVFEDVPEG ERLVVVATNV
0701: AETSLTIPGI KYVVDTGKEK VKNYDHATGM SSYDVQWISK ASASQRAGRA GRTGPGHCYR LYSAAAYGKD DLFPEFAEPQ IKKIPVEGVV LMLKFMSIDK
0801: VENFPFPTPP NKESLVEAER CLKTLEALHS DGKLTPMGKA MAQYPMSPRH SRLLLTVIKN LKNKQQGFAR SNFILGYAAA AASGLNFTNP FLKQLDECDT
0901: YGESVENTNL EANGPWERKR QKKLKAVVRE AREKFSNPSS DALTIARALQ FFELSENPVE FCRANSLHLK TMEEMSKLRK QLLQLIFRHS KWCEEFAWNS
1001: GDSAEVERAW RNEPSILQLN EEELLGQGIC AGWADRVARR IHTYLKPSED DRKVRAVRYQ SCALDDTIYL HRSSSVAQVA PELVVYSELL STKRLYMHGV
1101: TTVKPGWLLK YASSLCTFSA PLEDPKPYYD PLNDQVYCYV SPVFSRHNWQ LPLHSLPIKD GASRLQVFAC ALLKGDVLPC LRDAKDFLAL SPSAVLGPAR
1201: QRRVGDLLSR MKIGPKLVDS RAALRGVWNF DPGFLYPELK LWYQDRFHDQ FDLVWEQMHQ QVLLEGRKLF PKRSKKVKG
0001: MASVVGDDCN LDVMPPRKKK NKGSNKMQDK LNSNNNTGSK KSRKRKLNSN VNTVACKSQK RKLKKLEEDK EKEILFSKTA ELLDKYKISE DVSSLLQSSK
0101: VIGRSATKLE KRRRAMQLSK AGVETEHSDE SVEQNDNDDD SCMDEPTTPE HVEIETPTFV TDSEQQLVHA DLMISAEESS SKLEVDDTVD MIPLTTCRDD
0201: DEDSMDGLIE NEDVTVQGPR VPAFVVHVSR PAEVEETRKD LPIVMMEQEI MEAINRHPAV IISGQTGCGK TTQVPQFLYE AGFGSKQFSS RSGIIGITQP
0301: RRVAVLATAK RVAFELGVRL GKEVGFQVRY DKKIGENSSI KFMTDGILLR EIQNDFLLRR YSVIILDEAH ERSLNTDILI GMLTRVIKIR QEYYEEQQKS
0401: LQSGGTVTSE CQITPLKLIL MSATLRVEDF VSGKRLFPNI PPLIEVPTRQ YPVTIHFSKK TEIVDYIGEA YKKVMSIHKK LPQGGILVFV TGQREVDYLC
0501: EKLRKSSKEL VVQAAKRDAY VKKKCDDGSF GGVDMKEIAE AFDDDSNNQN SRFSSHGEDP SDIGDGNYDD DFEEEDMYES DEDRDWETVD DGFASSFVEE
0601: GKLDALRAAF NALADKNGSV SAEPAKSIAA ENQEAEQVKN KFSPGKLRVL PLYAMLSPAA QLRVFEEVEK EERLVVVATN VAETSLTIPG IKYVVDTGRV
0701: KVKNYDSKTG MESYEVDWIS QASASQRAGR AGRTGPGHCY RLYSSAVFSN IFEESSLPEI MKVPVDGVIL LMKSMNIPKV ENFPFPTPPE PSAIREAERC
0801: LKALEALDSN GGLTPLGKAM SHYPMSPRHS RMLLTVIQML KETRNYSRAN LILGYAVAAV AALSLPNPLI MEFEGEKKNE SKDADKTVKQ EDKQRKKDRK
0901: EKIKAARDRF SNPSSDALTV AYALHSFEVS ENGMGFCEAN GLHLKTMDEM SKLKDQLLRL VFNCCKPSET EDSFSWTHGT IQDVEKSWRI TTSTSSKTPL
1001: LQNEEELLGE AICAGWADRV ARKTRATEYQ ACAVQEPVFL HRWSSLINSA PELLVYSELL LTNRPYMHGA TRVRPEWLVK HAKSLCVFSA PLKDPKPYYS
1101: SEEDRVLCWV VPSFGPHNWE LPAHSVAITE DRDRAAAFGC ALLQGEVLTC LKSFRALLAG KPETLLEREA WGLERVGSLV MVLTEKKIDT LESLRKNWEQ
1201: NPNVLYSEIE VWFQKKFRHR VKDLWQTMLK EAHVRRS
0101: VIGRSATKLE KRRRAMQLSK AGVETEHSDE SVEQNDNDDD SCMDEPTTPE HVEIETPTFV TDSEQQLVHA DLMISAEESS SKLEVDDTVD MIPLTTCRDD
0201: DEDSMDGLIE NEDVTVQGPR VPAFVVHVSR PAEVEETRKD LPIVMMEQEI MEAINRHPAV IISGQTGCGK TTQVPQFLYE AGFGSKQFSS RSGIIGITQP
0301: RRVAVLATAK RVAFELGVRL GKEVGFQVRY DKKIGENSSI KFMTDGILLR EIQNDFLLRR YSVIILDEAH ERSLNTDILI GMLTRVIKIR QEYYEEQQKS
0401: LQSGGTVTSE CQITPLKLIL MSATLRVEDF VSGKRLFPNI PPLIEVPTRQ YPVTIHFSKK TEIVDYIGEA YKKVMSIHKK LPQGGILVFV TGQREVDYLC
0501: EKLRKSSKEL VVQAAKRDAY VKKKCDDGSF GGVDMKEIAE AFDDDSNNQN SRFSSHGEDP SDIGDGNYDD DFEEEDMYES DEDRDWETVD DGFASSFVEE
0601: GKLDALRAAF NALADKNGSV SAEPAKSIAA ENQEAEQVKN KFSPGKLRVL PLYAMLSPAA QLRVFEEVEK EERLVVVATN VAETSLTIPG IKYVVDTGRV
0701: KVKNYDSKTG MESYEVDWIS QASASQRAGR AGRTGPGHCY RLYSSAVFSN IFEESSLPEI MKVPVDGVIL LMKSMNIPKV ENFPFPTPPE PSAIREAERC
0801: LKALEALDSN GGLTPLGKAM SHYPMSPRHS RMLLTVIQML KETRNYSRAN LILGYAVAAV AALSLPNPLI MEFEGEKKNE SKDADKTVKQ EDKQRKKDRK
0901: EKIKAARDRF SNPSSDALTV AYALHSFEVS ENGMGFCEAN GLHLKTMDEM SKLKDQLLRL VFNCCKPSET EDSFSWTHGT IQDVEKSWRI TTSTSSKTPL
1001: LQNEEELLGE AICAGWADRV ARKTRATEYQ ACAVQEPVFL HRWSSLINSA PELLVYSELL LTNRPYMHGA TRVRPEWLVK HAKSLCVFSA PLKDPKPYYS
1101: SEEDRVLCWV VPSFGPHNWE LPAHSVAITE DRDRAAAFGC ALLQGEVLTC LKSFRALLAG KPETLLEREA WGLERVGSLV MVLTEKKIDT LESLRKNWEQ
1201: NPNVLYSEIE VWFQKKFRHR VKDLWQTMLK EAHVRRS
Arabidopsis Description
FAS4FAS4 [Source:UniProtKB/TrEMBL;Acc:A0A178WIP4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.