Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G206600.1 | Wheat | nucleus | 95.04 | 90.82 |
| HORVU0Hr1G039590.6 | Barley | nucleus | 92.6 | 88.42 |
| TraesCS6A01G299400.2 | Wheat | nucleus | 81.69 | 75.72 |
| KXG30805 | Sorghum | nucleus | 74.37 | 71.63 |
| Os02t0736600-01 | Rice | nucleus | 73.39 | 70.91 |
| Zm00001d017967_P003 | Maize | nucleus | 71.68 | 68.88 |
| GSMUA_Achr3P08220_001 | Banana | nucleus | 49.8 | 56.93 |
| VIT_07s0005g00860.t01 | Wine grape | nucleus | 51.67 | 48.07 |
| Solyc01g095710.2.1 | Tomato | nucleus | 49.39 | 45.26 |
| AT1G33390.2 | Thale cress | nucleus | 45.24 | 44.95 |
| PGSC0003DMT400000297 | Potato | nucleus | 48.58 | 44.69 |
| KRH65271 | Soybean | nucleus | 47.84 | 44.48 |
| KRH76262 | Soybean | nucleus | 47.76 | 44.44 |
| CDY48353 | Canola | nucleus | 43.53 | 43.74 |
| CDY34159 | Canola | nucleus | 43.86 | 43.57 |
| Bra032998.1-P | Field mustard | nucleus | 43.53 | 43.25 |
| TraesCS4A01G239500.2 | Wheat | nucleus | 18.8 | 32.77 |
| TraesCS4A01G124200.2 | Wheat | cytosol | 18.96 | 32.41 |
| TraesCS3A01G131800.1 | Wheat | nucleus | 17.82 | 31.24 |
| TraesCS7A01G156700.1 | Wheat | plastid | 18.06 | 31.14 |
| TraesCS1A01G243400.1 | Wheat | nucleus | 20.18 | 23.4 |
| TraesCS4A01G158200.1 | Wheat | nucleus | 21.4 | 21.31 |
| TraesCS1A01G151100.1 | Wheat | nucleus | 17.25 | 20.6 |
| TraesCS2A01G233700.1 | Wheat | nucleus | 20.59 | 20.03 |
| TraesCS5A01G387700.2 | Wheat | golgi, nucleus | 17.33 | 18.44 |
| TraesCS3A01G021300.1 | Wheat | extracellular | 17.49 | 17.28 |
| TraesCS3A01G298900.1 | Wheat | nucleus | 15.3 | 16.0 |
| TraesCS2A01G304100.1 | Wheat | nucleus, plastid | 16.52 | 14.21 |
| TraesCS5A01G074100.1 | Wheat | nucleus | 17.33 | 12.68 |
| TraesCS3A01G111000.1 | Wheat | nucleus | 17.17 | 12.03 |
| TraesCS2A01G164100.1 | Wheat | nucleus | 16.76 | 11.37 |
| Os02t0736800-01 | Rice | mitochondrion | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.20.120.1080 | Gene3D:3.40.50.300 | MapMan:35.1 | InterPro:DEAD/DEAH_box_helicase_dom | InterPro:DNA/RNA_helicase_DEAH_CS | InterPro:DUF1605 |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004386 | GO:GO:0005488 |
| GO:GO:0005524 | GO:GO:0016787 | InterPro:Helicase-assoc_dom | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 |
| InterPro:IPR014001 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFAM:PF04408 | PFAM:PF07717 |
| ScanProsite:PS00690 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR18934 | PANTHER:PTHR18934:SF99 | SMART:SM00487 |
| SMART:SM00490 | SMART:SM00847 | SUPFAM:SSF52540 | EnsemblPlantsGene:TraesCS6A01G178200 | EnsemblPlants:TraesCS6A01G178200.1 | TIGR:cd00046 |
| TIGR:cd00079 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr6A:-:199994741..200005140
Molecular Weight (calculated)
138696.0 Da
IEP (calculated)
6.692
GRAVY (calculated)
-0.511
Length
1229 amino acids
Sequence
(BLAST)
(BLAST)
0001: MEEDSNALIL PCKRKNKTQG IGKEEKQKKA LQAKSIEFLQ KHMIADDVFS LLDTTCSVGQ AATMKEKFRR AVQFSTHGLD VPEELLLFKK HCDRKGVPGD
0101: SEAVPEVSPV KFIKAAKLDH PGSERKNHEK DSMEPMMDLG VSILEQKTEG TNDDAGISVR QIILGQKTEE TNDDADILAH QPIQSPVQNC SAAEIDLQDK
0201: ELQQSEAALQ ECFNPPIVVP VSRPQEVEKA RRDLPIIMME QEIMEAVYEN SVVILCGETG CGKTTQVPQF LYEAGFGTSN RAGRKGMIGI TQPRRVAVLA
0301: TSKRVAYELG LKLGKEVGFE VRHDKEVGSK CSIKFMTDGI LLREIQSDIL LKHYSVIILD EAHERSLNTD ILIGMLCRII KLRKDIYADQ QKKIRSGKNI
0401: KPEDMISQLK VVLMSATLQL KEFISNRRLF DVIPPTVEIP ARQFPVTILL EYRTHDDYLA QAYKKVLSIH KSLPPGGILV FVTGQREVDY LCKKLQRASK
0501: GQIGKKPERV GDECGSRPEI DEKEIFEAYD IDRTEAEHQE DMFSSYVEDE MDDGLNVDSS DAETESETDT DSDEDSAAHE TTEDGPVSSF LKHAESSSVL
0601: KASFKAISGI SGESEAAEES SNVTIAEKSN PSNPSFSKRT EPTSVSHGRL RVLPLYAMQP ASQQLRVFRD IPEEERLVVV ATNVAETSLT IPGITYVVDT
0701: GKEKVKNYDH ATGMASYEVQ WISKASASQR AGRAGRTGPG HCYRLYSGAA YGKDDLFPEF SEPEIKKMPV DGLVLMLKFM KIDKVENFPF PTPPNDESLV
0801: EAKRCLKTLE ALDSKEKLTS MGKAMAQYPM SPQTFAQQGY ARSNFILGYA TAAASALSYA NPFLIQGDTS RESNQDGPDP EHKDQDERRR QKKLKAMVRE
0901: ARKDFSIPSS DALTISHALR SFECSRNPVE FCREYSLHLK TMEGMSKLRK QLLRLIFHHS KFCDEFSWNY GGSEDVEQAW RKRIFKVAKK INTFSGLSKE
1001: DRKVRAGRYQ SCILNDTIYL HRSSSVAQTP PEFVVYSELL NTKRLYMHGV TSVKPGWLFK YASSLCTFSA PLEDPKPYYE PQNDQVYCYV SPIFSRHNWQ
1101: LPLHSLPIED PTRRLQVFAW ALLKGDVLPC LRVVQKFLAL SPSAVLEPAS QRRVGDLLSR MKMGGKLKDS RRALRDAWRG DPDFLYPEIQ AWIQDKYQSQ
1201: FEAIWEQMHQ EVWLEGHELF PKRFKKVEG
0101: SEAVPEVSPV KFIKAAKLDH PGSERKNHEK DSMEPMMDLG VSILEQKTEG TNDDAGISVR QIILGQKTEE TNDDADILAH QPIQSPVQNC SAAEIDLQDK
0201: ELQQSEAALQ ECFNPPIVVP VSRPQEVEKA RRDLPIIMME QEIMEAVYEN SVVILCGETG CGKTTQVPQF LYEAGFGTSN RAGRKGMIGI TQPRRVAVLA
0301: TSKRVAYELG LKLGKEVGFE VRHDKEVGSK CSIKFMTDGI LLREIQSDIL LKHYSVIILD EAHERSLNTD ILIGMLCRII KLRKDIYADQ QKKIRSGKNI
0401: KPEDMISQLK VVLMSATLQL KEFISNRRLF DVIPPTVEIP ARQFPVTILL EYRTHDDYLA QAYKKVLSIH KSLPPGGILV FVTGQREVDY LCKKLQRASK
0501: GQIGKKPERV GDECGSRPEI DEKEIFEAYD IDRTEAEHQE DMFSSYVEDE MDDGLNVDSS DAETESETDT DSDEDSAAHE TTEDGPVSSF LKHAESSSVL
0601: KASFKAISGI SGESEAAEES SNVTIAEKSN PSNPSFSKRT EPTSVSHGRL RVLPLYAMQP ASQQLRVFRD IPEEERLVVV ATNVAETSLT IPGITYVVDT
0701: GKEKVKNYDH ATGMASYEVQ WISKASASQR AGRAGRTGPG HCYRLYSGAA YGKDDLFPEF SEPEIKKMPV DGLVLMLKFM KIDKVENFPF PTPPNDESLV
0801: EAKRCLKTLE ALDSKEKLTS MGKAMAQYPM SPQTFAQQGY ARSNFILGYA TAAASALSYA NPFLIQGDTS RESNQDGPDP EHKDQDERRR QKKLKAMVRE
0901: ARKDFSIPSS DALTISHALR SFECSRNPVE FCREYSLHLK TMEGMSKLRK QLLRLIFHHS KFCDEFSWNY GGSEDVEQAW RKRIFKVAKK INTFSGLSKE
1001: DRKVRAGRYQ SCILNDTIYL HRSSSVAQTP PEFVVYSELL NTKRLYMHGV TSVKPGWLFK YASSLCTFSA PLEDPKPYYE PQNDQVYCYV SPIFSRHNWQ
1101: LPLHSLPIED PTRRLQVFAW ALLKGDVLPC LRVVQKFLAL SPSAVLEPAS QRRVGDLLSR MKMGGKLKDS RRALRDAWRG DPDFLYPEIQ AWIQDKYQSQ
1201: FEAIWEQMHQ EVWLEGHELF PKRFKKVEG
0001: MASVVGDDCN LDVMPPRKKK NKGSNKMQDK LNSNNNTGSK KSRKRKLNSN VNTVACKSQK RKLKKLEEDK EKEILFSKTA ELLDKYKISE DVSSLLQSSK
0101: VIGRSATKLE KRRRAMQLSK AGVETEHSDE SVEQNDNDDD SCMDEPTTPE HVEIETPTFV TDSEQQLVHA DLMISAEESS SKLEVDDTVD MIPLTTCRDD
0201: DEDSMDGLIE NEDVTVQGPR VPAFVVHVSR PAEVEETRKD LPIVMMEQEI MEAINRHPAV IISGQTGCGK TTQVPQFLYE AGFGSKQFSS RSGIIGITQP
0301: RRVAVLATAK RVAFELGVRL GKEVGFQVRY DKKIGENSSI KFMTDGILLR EIQNDFLLRR YSVIILDEAH ERSLNTDILI GMLTRVIKIR QEYYEEQQKS
0401: LQSGGTVTSE CQITPLKLIL MSATLRVEDF VSGKRLFPNI PPLIEVPTRQ YPVTIHFSKK TEIVDYIGEA YKKVMSIHKK LPQGGILVFV TGQREVDYLC
0501: EKLRKSSKEL VVQAAKRDAY VKKKCDDGSF GGVDMKEIAE AFDDDSNNQN SRFSSHGEDP SDIGDGNYDD DFEEEDMYES DEDRDWETVD DGFASSFVEE
0601: GKLDALRAAF NALADKNGSV SAEPAKSIAA ENQEAEQVKN KFSPGKLRVL PLYAMLSPAA QLRVFEEVEK EERLVVVATN VAETSLTIPG IKYVVDTGRV
0701: KVKNYDSKTG MESYEVDWIS QASASQRAGR AGRTGPGHCY RLYSSAVFSN IFEESSLPEI MKVPVDGVIL LMKSMNIPKV ENFPFPTPPE PSAIREAERC
0801: LKALEALDSN GGLTPLGKAM SHYPMSPRHS RMLLTVIQML KETRNYSRAN LILGYAVAAV AALSLPNPLI MEFEGEKKNE SKDADKTVKQ EDKQRKKDRK
0901: EKIKAARDRF SNPSSDALTV AYALHSFEVS ENGMGFCEAN GLHLKTMDEM SKLKDQLLRL VFNCCKPSET EDSFSWTHGT IQDVEKSWRI TTSTSSKTPL
1001: LQNEEELLGE AICAGWADRV ARKTRATEYQ ACAVQEPVFL HRWSSLINSA PELLVYSELL LTNRPYMHGA TRVRPEWLVK HAKSLCVFSA PLKDPKPYYS
1101: SEEDRVLCWV VPSFGPHNWE LPAHSVAITE DRDRAAAFGC ALLQGEVLTC LKSFRALLAG KPETLLEREA WGLERVGSLV MVLTEKKIDT LESLRKNWEQ
1201: NPNVLYSEIE VWFQKKFRHR VKDLWQTMLK EAHVRRS
0101: VIGRSATKLE KRRRAMQLSK AGVETEHSDE SVEQNDNDDD SCMDEPTTPE HVEIETPTFV TDSEQQLVHA DLMISAEESS SKLEVDDTVD MIPLTTCRDD
0201: DEDSMDGLIE NEDVTVQGPR VPAFVVHVSR PAEVEETRKD LPIVMMEQEI MEAINRHPAV IISGQTGCGK TTQVPQFLYE AGFGSKQFSS RSGIIGITQP
0301: RRVAVLATAK RVAFELGVRL GKEVGFQVRY DKKIGENSSI KFMTDGILLR EIQNDFLLRR YSVIILDEAH ERSLNTDILI GMLTRVIKIR QEYYEEQQKS
0401: LQSGGTVTSE CQITPLKLIL MSATLRVEDF VSGKRLFPNI PPLIEVPTRQ YPVTIHFSKK TEIVDYIGEA YKKVMSIHKK LPQGGILVFV TGQREVDYLC
0501: EKLRKSSKEL VVQAAKRDAY VKKKCDDGSF GGVDMKEIAE AFDDDSNNQN SRFSSHGEDP SDIGDGNYDD DFEEEDMYES DEDRDWETVD DGFASSFVEE
0601: GKLDALRAAF NALADKNGSV SAEPAKSIAA ENQEAEQVKN KFSPGKLRVL PLYAMLSPAA QLRVFEEVEK EERLVVVATN VAETSLTIPG IKYVVDTGRV
0701: KVKNYDSKTG MESYEVDWIS QASASQRAGR AGRTGPGHCY RLYSSAVFSN IFEESSLPEI MKVPVDGVIL LMKSMNIPKV ENFPFPTPPE PSAIREAERC
0801: LKALEALDSN GGLTPLGKAM SHYPMSPRHS RMLLTVIQML KETRNYSRAN LILGYAVAAV AALSLPNPLI MEFEGEKKNE SKDADKTVKQ EDKQRKKDRK
0901: EKIKAARDRF SNPSSDALTV AYALHSFEVS ENGMGFCEAN GLHLKTMDEM SKLKDQLLRL VFNCCKPSET EDSFSWTHGT IQDVEKSWRI TTSTSSKTPL
1001: LQNEEELLGE AICAGWADRV ARKTRATEYQ ACAVQEPVFL HRWSSLINSA PELLVYSELL LTNRPYMHGA TRVRPEWLVK HAKSLCVFSA PLKDPKPYYS
1101: SEEDRVLCWV VPSFGPHNWE LPAHSVAITE DRDRAAAFGC ALLQGEVLTC LKSFRALLAG KPETLLEREA WGLERVGSLV MVLTEKKIDT LESLRKNWEQ
1201: NPNVLYSEIE VWFQKKFRHR VKDLWQTMLK EAHVRRS
Arabidopsis Description
FAS4FAS4 [Source:UniProtKB/TrEMBL;Acc:A0A178WIP4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.