Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g095710.2.1 | Tomato | nucleus | 94.69 | 94.33 |
| VIT_07s0005g00860.t01 | Wine grape | nucleus | 63.1 | 63.82 |
| GSMUA_Achr3P08220_001 | Banana | nucleus | 45.06 | 56.0 |
| KRH65271 | Soybean | nucleus | 54.57 | 55.14 |
| KRH76262 | Soybean | nucleus | 54.42 | 55.03 |
| AT1G33390.2 | Thale cress | nucleus | 50.75 | 54.81 |
| CDY48353 | Canola | nucleus | 48.28 | 52.74 |
| CDY34159 | Canola | nucleus | 48.5 | 52.38 |
| Bra032998.1-P | Field mustard | nucleus | 48.05 | 51.9 |
| Os02t0736600-01 | Rice | nucleus | 49.33 | 51.81 |
| KXG30805 | Sorghum | nucleus | 48.8 | 51.1 |
| Zm00001d017967_P003 | Maize | nucleus | 48.58 | 50.74 |
| HORVU0Hr1G039590.6 | Barley | nucleus | 47.98 | 49.81 |
| TraesCS6B01G206600.1 | Wheat | nucleus | 47.46 | 49.3 |
| TraesCS6A01G178200.1 | Wheat | nucleus | 44.69 | 48.58 |
| TraesCS6B01G329000.1 | Wheat | nucleus | 47.9 | 48.52 |
| TraesCS6D01G279300.1 | Wheat | nucleus | 47.98 | 48.34 |
| TraesCS6A01G299400.2 | Wheat | nucleus | 47.83 | 48.19 |
| PGSC0003DMT400038620 | Potato | cytosol, nucleus, plastid | 12.05 | 46.13 |
| PGSC0003DMT400023284 | Potato | nucleus | 17.59 | 32.5 |
| PGSC0003DMT400046188 | Potato | nucleus | 16.24 | 31.45 |
| PGSC0003DMT400084916 | Potato | nucleus | 18.79 | 31.34 |
| PGSC0003DMT400005723 | Potato | nucleus | 19.24 | 31.27 |
| PGSC0003DMT400009842 | Potato | mitochondrion | 8.53 | 30.24 |
| PGSC0003DMT400039875 | Potato | nucleus | 19.39 | 28.06 |
| PGSC0003DMT400063370 | Potato | nucleus | 20.58 | 26.19 |
| PGSC0003DMT400055058 | Potato | nucleus | 15.79 | 24.71 |
| PGSC0003DMT400056692 | Potato | nucleus | 19.54 | 22.87 |
| PGSC0003DMT400018531 | Potato | nucleus | 19.91 | 20.7 |
| PGSC0003DMT400055091 | Potato | mitochondrion | 17.29 | 19.85 |
| PGSC0003DMT400041805 | Potato | nucleus | 16.92 | 13.93 |
| PGSC0003DMT400060759 | Potato | nucleus | 17.29 | 13.36 |
| PGSC0003DMT400063366 | Potato | plastid | 0.52 | 4.9 |
| PGSC0003DMT400041647 | Potato | cytosol | 0.9 | 3.27 |
| Os02t0736800-01 | Rice | mitochondrion | 0.07 | 1.04 |
Protein Annotations
| Gene3D:1.20.120.1080 | EntrezGene:102604659 | Gene3D:3.40.50.300 | MapMan:35.1 | InterPro:AAA+_ATPase | ncoils:Coil |
| InterPro:DEAD/DEAH_box_helicase_dom | InterPro:DNA/RNA_helicase_DEAH_CS | InterPro:DUF1605 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003824 | GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0016787 | InterPro:Helicase-assoc_dom |
| InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | UniProt:M0ZGH2 | InterPro:P-loop_NTPase |
| PFAM:PF00270 | PFAM:PF00271 | PFAM:PF04408 | PFAM:PF07717 | EnsemblPlantsGene:PGSC0003DMG401000100 | PGSC:PGSC0003DMG401000100 |
| EnsemblPlants:PGSC0003DMT400000297 | ScanProsite:PS00690 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR18934 | PANTHER:PTHR18934:SF99 |
| SMART:SM00382 | SMART:SM00487 | SMART:SM00490 | SMART:SM00847 | SUPFAM:SSF52540 | UniParc:UPI000296BC11 |
| RefSeq:XP_006339691.1 | SEG:seg | : | : | : | : |
Description
Helicase domain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG401000100]
Coordinates
chr1:+:73281977..73291177
Molecular Weight (calculated)
150556.0 Da
IEP (calculated)
8.064
GRAVY (calculated)
-0.471
Length
1336 amino acids
Sequence
(BLAST)
(BLAST)
0001: MEFSANMNLD TDNWSQNDQD SNALILPDKK KKKKKEKEQV SKKLKPKNNS IKLSQSQKKK LKKLEEDKEK AVLLAESIKT LKKHQIQDDV YSLMWSSRNL
0101: GQGETNREKR RREIQFSRAG LDVPHRDRPV KKRTVDDLSS EVLHDSEEMQ LSPIVNGNLW QSSIGEGGVP SDAPITPGSP QELACHSELL VCDRDTSVPS
0201: KQEEDRTAEC LNSDYQQNHL PIHDCHNEER RKSTDVAKAV QNAILSNSTN SANCLPERDL TTPVVVHVSR PKEVENNRSN LPIVMMEQEI MEAINDNTCV
0301: IVCGETGCGK TTQVPQFLYE AGYGSNHSNA RGGIIGVTQP RRVAVLATAK RVAFELGVRL GKEVGFQVRH DRRIGDNCSI KFMTDGILLR ELQNDFLLRR
0401: YSILILDEAH ERSLNTDILI GMLSRILRER QKEYEEQQKK LLSGQTIIPE ERVYPLKLVL MSATLRVEDF MSGRKIFRDP PPVMEVPTRQ YPVTIHFSKR
0501: TEMVDYVGQA YKKILSIHKR LPPGGILVFV TGQREVEFLC QKLRKASKEI VDRASKDHSE LSLASEGNAI RVKVDKEISE AFDVERSSVN EITERFNSYD
0601: EDHGESYEDD SEISYDSADD SDLDVYSDDD AGLLNQKYPS SDGKVDVLGE EGSLTSLKAA FEALAGKRTS EPDSCRKELV PITEEGTASN ESESLLSKVR
0701: IGANGTCAGP MCVLPLYAML PASAQLRVFE EVKEGERLVV VATNVAETSL TIPGIKYVVD TGREKVKKYN SSNGMEAYEI QFISKASAAQ RAGRAGRTGP
0801: GHCYRLYSSA VFNDMFFDFS NAEILKVPVD GVVLLLKSMH IDKVANFPFP TPPEPTALVE AERCLKVLEA LDSNGRLTPL GKAMAQYPMS PRHSRMLLTA
0901: IQIMQKVKDY SRANTVLAYA VAAAAALSLS NPFLMEFEGK YKDLDGLKQD EKPGSAETGR DLGKEERMRI KKLKETARVS RAKFSNPTSD VLSVAYALQC
1001: FELSGKPLEF CTDNTLHFKT MEEMSKLRKQ LINLVFNSKL CDSQQKFSWP HGTLEDVECA WKIPSNKCPL QLNEEEILGQ AICAGWADRV AKRIKDVSSL
1101: AESDMHVHAV RYQACLVKEI VFLNRRSSIS RSAPQYLVYT ELLHTKRPYI QGATSVKENW LIKYAPSLCS FSAPLSDPKP YYDPLKDQVL CWVRPTFGPH
1201: LWKLPLHGLP IVDDFLRVAV FASSLLEGKV LPCLKAVQKF LAASPASILK PEALGLKRVG DLIYKMRIKK KGIDSCAKLR KLWDDNPREL FPEILDWFQE
1301: GFHEHFEDLW AKMQLEVLLY PKKRFSEKVK RKKRKS
0101: GQGETNREKR RREIQFSRAG LDVPHRDRPV KKRTVDDLSS EVLHDSEEMQ LSPIVNGNLW QSSIGEGGVP SDAPITPGSP QELACHSELL VCDRDTSVPS
0201: KQEEDRTAEC LNSDYQQNHL PIHDCHNEER RKSTDVAKAV QNAILSNSTN SANCLPERDL TTPVVVHVSR PKEVENNRSN LPIVMMEQEI MEAINDNTCV
0301: IVCGETGCGK TTQVPQFLYE AGYGSNHSNA RGGIIGVTQP RRVAVLATAK RVAFELGVRL GKEVGFQVRH DRRIGDNCSI KFMTDGILLR ELQNDFLLRR
0401: YSILILDEAH ERSLNTDILI GMLSRILRER QKEYEEQQKK LLSGQTIIPE ERVYPLKLVL MSATLRVEDF MSGRKIFRDP PPVMEVPTRQ YPVTIHFSKR
0501: TEMVDYVGQA YKKILSIHKR LPPGGILVFV TGQREVEFLC QKLRKASKEI VDRASKDHSE LSLASEGNAI RVKVDKEISE AFDVERSSVN EITERFNSYD
0601: EDHGESYEDD SEISYDSADD SDLDVYSDDD AGLLNQKYPS SDGKVDVLGE EGSLTSLKAA FEALAGKRTS EPDSCRKELV PITEEGTASN ESESLLSKVR
0701: IGANGTCAGP MCVLPLYAML PASAQLRVFE EVKEGERLVV VATNVAETSL TIPGIKYVVD TGREKVKKYN SSNGMEAYEI QFISKASAAQ RAGRAGRTGP
0801: GHCYRLYSSA VFNDMFFDFS NAEILKVPVD GVVLLLKSMH IDKVANFPFP TPPEPTALVE AERCLKVLEA LDSNGRLTPL GKAMAQYPMS PRHSRMLLTA
0901: IQIMQKVKDY SRANTVLAYA VAAAAALSLS NPFLMEFEGK YKDLDGLKQD EKPGSAETGR DLGKEERMRI KKLKETARVS RAKFSNPTSD VLSVAYALQC
1001: FELSGKPLEF CTDNTLHFKT MEEMSKLRKQ LINLVFNSKL CDSQQKFSWP HGTLEDVECA WKIPSNKCPL QLNEEEILGQ AICAGWADRV AKRIKDVSSL
1101: AESDMHVHAV RYQACLVKEI VFLNRRSSIS RSAPQYLVYT ELLHTKRPYI QGATSVKENW LIKYAPSLCS FSAPLSDPKP YYDPLKDQVL CWVRPTFGPH
1201: LWKLPLHGLP IVDDFLRVAV FASSLLEGKV LPCLKAVQKF LAASPASILK PEALGLKRVG DLIYKMRIKK KGIDSCAKLR KLWDDNPREL FPEILDWFQE
1301: GFHEHFEDLW AKMQLEVLLY PKKRFSEKVK RKKRKS
0001: MASVVGDDCN LDVMPPRKKK NKGSNKMQDK LNSNNNTGSK KSRKRKLNSN VNTVACKSQK RKLKKLEEDK EKEILFSKTA ELLDKYKISE DVSSLLQSSK
0101: VIGRSATKLE KRRRAMQLSK AGVETEHSDE SVEQNDNDDD SCMDEPTTPE HVEIETPTFV TDSEQQLVHA DLMISAEESS SKLEVDDTVD MIPLTTCRDD
0201: DEDSMDGLIE NEDVTVQGPR VPAFVVHVSR PAEVEETRKD LPIVMMEQEI MEAINRHPAV IISGQTGCGK TTQVPQFLYE AGFGSKQFSS RSGIIGITQP
0301: RRVAVLATAK RVAFELGVRL GKEVGFQVRY DKKIGENSSI KFMTDGILLR EIQNDFLLRR YSVIILDEAH ERSLNTDILI GMLTRVIKIR QEYYEEQQKS
0401: LQSGGTVTSE CQITPLKLIL MSATLRVEDF VSGKRLFPNI PPLIEVPTRQ YPVTIHFSKK TEIVDYIGEA YKKVMSIHKK LPQGGILVFV TGQREVDYLC
0501: EKLRKSSKEL VVQAAKRDAY VKKKCDDGSF GGVDMKEIAE AFDDDSNNQN SRFSSHGEDP SDIGDGNYDD DFEEEDMYES DEDRDWETVD DGFASSFVEE
0601: GKLDALRAAF NALADKNGSV SAEPAKSIAA ENQEAEQVKN KFSPGKLRVL PLYAMLSPAA QLRVFEEVEK EERLVVVATN VAETSLTIPG IKYVVDTGRV
0701: KVKNYDSKTG MESYEVDWIS QASASQRAGR AGRTGPGHCY RLYSSAVFSN IFEESSLPEI MKVPVDGVIL LMKSMNIPKV ENFPFPTPPE PSAIREAERC
0801: LKALEALDSN GGLTPLGKAM SHYPMSPRHS RMLLTVIQML KETRNYSRAN LILGYAVAAV AALSLPNPLI MEFEGEKKNE SKDADKTVKQ EDKQRKKDRK
0901: EKIKAARDRF SNPSSDALTV AYALHSFEVS ENGMGFCEAN GLHLKTMDEM SKLKDQLLRL VFNCCKPSET EDSFSWTHGT IQDVEKSWRI TTSTSSKTPL
1001: LQNEEELLGE AICAGWADRV ARKTRATEYQ ACAVQEPVFL HRWSSLINSA PELLVYSELL LTNRPYMHGA TRVRPEWLVK HAKSLCVFSA PLKDPKPYYS
1101: SEEDRVLCWV VPSFGPHNWE LPAHSVAITE DRDRAAAFGC ALLQGEVLTC LKSFRALLAG KPETLLEREA WGLERVGSLV MVLTEKKIDT LESLRKNWEQ
1201: NPNVLYSEIE VWFQKKFRHR VKDLWQTMLK EAHVRRS
0101: VIGRSATKLE KRRRAMQLSK AGVETEHSDE SVEQNDNDDD SCMDEPTTPE HVEIETPTFV TDSEQQLVHA DLMISAEESS SKLEVDDTVD MIPLTTCRDD
0201: DEDSMDGLIE NEDVTVQGPR VPAFVVHVSR PAEVEETRKD LPIVMMEQEI MEAINRHPAV IISGQTGCGK TTQVPQFLYE AGFGSKQFSS RSGIIGITQP
0301: RRVAVLATAK RVAFELGVRL GKEVGFQVRY DKKIGENSSI KFMTDGILLR EIQNDFLLRR YSVIILDEAH ERSLNTDILI GMLTRVIKIR QEYYEEQQKS
0401: LQSGGTVTSE CQITPLKLIL MSATLRVEDF VSGKRLFPNI PPLIEVPTRQ YPVTIHFSKK TEIVDYIGEA YKKVMSIHKK LPQGGILVFV TGQREVDYLC
0501: EKLRKSSKEL VVQAAKRDAY VKKKCDDGSF GGVDMKEIAE AFDDDSNNQN SRFSSHGEDP SDIGDGNYDD DFEEEDMYES DEDRDWETVD DGFASSFVEE
0601: GKLDALRAAF NALADKNGSV SAEPAKSIAA ENQEAEQVKN KFSPGKLRVL PLYAMLSPAA QLRVFEEVEK EERLVVVATN VAETSLTIPG IKYVVDTGRV
0701: KVKNYDSKTG MESYEVDWIS QASASQRAGR AGRTGPGHCY RLYSSAVFSN IFEESSLPEI MKVPVDGVIL LMKSMNIPKV ENFPFPTPPE PSAIREAERC
0801: LKALEALDSN GGLTPLGKAM SHYPMSPRHS RMLLTVIQML KETRNYSRAN LILGYAVAAV AALSLPNPLI MEFEGEKKNE SKDADKTVKQ EDKQRKKDRK
0901: EKIKAARDRF SNPSSDALTV AYALHSFEVS ENGMGFCEAN GLHLKTMDEM SKLKDQLLRL VFNCCKPSET EDSFSWTHGT IQDVEKSWRI TTSTSSKTPL
1001: LQNEEELLGE AICAGWADRV ARKTRATEYQ ACAVQEPVFL HRWSSLINSA PELLVYSELL LTNRPYMHGA TRVRPEWLVK HAKSLCVFSA PLKDPKPYYS
1101: SEEDRVLCWV VPSFGPHNWE LPAHSVAITE DRDRAAAFGC ALLQGEVLTC LKSFRALLAG KPETLLEREA WGLERVGSLV MVLTEKKIDT LESLRKNWEQ
1201: NPNVLYSEIE VWFQKKFRHR VKDLWQTMLK EAHVRRS
Arabidopsis Description
FAS4FAS4 [Source:UniProtKB/TrEMBL;Acc:A0A178WIP4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.