Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os02t0301500-01 | Rice | nucleus | 63.17 | 92.67 |
| CDY51663 | Canola | nucleus | 7.12 | 90.48 |
| CDX91491 | Canola | nucleus | 6.99 | 88.89 |
| CDY23338 | Canola | cytosol | 46.19 | 87.68 |
| KRG97372 | Soybean | nucleus | 87.52 | 72.49 |
| Solyc01g110990.2.1 | Tomato | nucleus | 99.25 | 71.56 |
| CDX83624 | Canola | nucleus | 91.51 | 65.74 |
| CDY13640 | Canola | nucleus | 91.76 | 65.33 |
| VIT_08s0056g00470.t01 | Wine grape | nucleus | 94.26 | 64.26 |
| GSMUA_Achr10P... | Banana | nucleus | 77.4 | 63.59 |
| PGSC0003DMT400056692 | Potato | nucleus | 90.39 | 63.45 |
| AT3G26560.1 | Thale cress | nucleus | 91.76 | 62.93 |
| Bra025211.1-P | Field mustard | nucleus | 91.76 | 62.77 |
| KRH05918 | Soybean | nucleus | 93.01 | 62.24 |
| KRH17401 | Soybean | nucleus | 93.01 | 61.93 |
| EES15324 | Sorghum | nucleus | 80.65 | 60.32 |
| Os06t0343100-01 | Rice | nucleus | 81.52 | 60.24 |
| TraesCS4B01G148500.1 | Wheat | nucleus | 92.38 | 59.97 |
| EER95349 | Sorghum | nucleus | 92.88 | 59.9 |
| TraesCS4A01G158200.1 | Wheat | nucleus | 92.26 | 59.89 |
| Zm00001d015893_P001 | Maize | nucleus, plasma membrane | 92.38 | 59.87 |
| HORVU0Hr1G007860.1 | Barley | nucleus | 92.13 | 59.42 |
| Bra040091.1-P | Field mustard | nucleus | 58.3 | 59.04 |
| TraesCS7B01G245800.1 | Wheat | nucleus | 78.9 | 58.74 |
| TraesCS7D01G341800.1 | Wheat | nucleus | 78.9 | 58.41 |
| TraesCS4D01G147900.1 | Wheat | nucleus | 92.38 | 57.41 |
| PGSC0003DMT400038620 | Potato | cytosol, nucleus, plastid | 23.97 | 55.01 |
| PGSC0003DMT400023284 | Potato | nucleus | 44.07 | 48.82 |
| Zm00001d031581_P002 | Maize | nucleus | 80.4 | 48.64 |
| PGSC0003DMT400046188 | Potato | nucleus | 39.95 | 46.38 |
| PGSC0003DMT400005723 | Potato | nucleus | 45.44 | 44.28 |
| PGSC0003DMT400009842 | Potato | mitochondrion | 20.6 | 43.77 |
| PGSC0003DMT400039875 | Potato | nucleus | 46.69 | 40.52 |
| PGSC0003DMT400063370 | Potato | nucleus | 47.44 | 36.19 |
| PGSC0003DMT400018531 | Potato | nucleus | 48.56 | 30.27 |
| PGSC0003DMT400055058 | Potato | nucleus | 31.96 | 29.98 |
| PGSC0003DMT400055091 | Potato | mitochondrion | 30.84 | 21.22 |
| PGSC0003DMT400000297 | Potato | nucleus | 31.34 | 18.79 |
| PGSC0003DMT400041805 | Potato | nucleus | 29.84 | 14.73 |
| PGSC0003DMT400060759 | Potato | nucleus | 30.34 | 14.05 |
| PGSC0003DMT400041647 | Potato | cytosol | 0.25 | 0.54 |
| PGSC0003DMT400063366 | Potato | plastid | 0.0 | 0.0 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | InterPro:DNA/RNA_helicase_DEAH_CS | InterPro:DUF1605 |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004386 | GO:GO:0005488 |
| GO:GO:0005524 | GO:GO:0016787 | InterPro:Helicase-assoc_dom | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 |
| InterPro:IPR014001 | UniProt:M1D8C5 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFAM:PF04408 |
| PFAM:PF07717 | EnsemblPlantsGene:PGSC0003DMG400034487 | PGSC:PGSC0003DMG400034487 | EnsemblPlants:PGSC0003DMT400084916 | ScanProsite:PS00690 | PFscan:PS51192 |
| PFscan:PS51194 | PANTHER:PTHR18934 | PANTHER:PTHR18934:SF120 | SMART:SM00487 | SMART:SM00490 | SMART:SM00847 |
| SUPFAM:SSF52540 | UniParc:UPI0002963583 | SEG:seg | : | : | : |
Description
ATP-dependent RNA helicase [Source:PGSC_GENE;Acc:PGSC0003DMG400034487]
Coordinates
chr1:+:87094453..87096858
Molecular Weight (calculated)
90915.3 Da
IEP (calculated)
5.994
GRAVY (calculated)
-0.392
Length
801 amino acids
Sequence
(BLAST)
(BLAST)
001: MFDEEGDGML YQEEGGVDEE LEVELNEDEP PFLQGQSRYS VDMSPVKIFK NPEGSLSRAA ALQSALIKER REVREQQQRT MLDSIPKDLN RPWEDPMPET
101: GERHLAQELR GVGLSAYDMP EWKKDAYGKA VTFGQRSKLS LQEQRQSLPI YKLKKELVQA VHDNQVLVVI GETGSGKTTQ VTQYLAEAGY TTRGKIGCTQ
201: PRRVAATSVA KRVAEEFGCR LGEEVGYAIR FEDCTGPETV IKYMTDGMLW REILIDDNLS QYSVIMLDEA HERTINTDVL FGLLKQLLKR RPDLRLIVTS
301: ATLDAEKFSG YFFDCNIFTI PGRTFPVEIL YTKQPESDYL DASLITVMQI HLTEPEGDIL LFLTGQEEID YACQCLYERM KGLGKNVPEL IILPVYSALP
401: SEMQSRIFDP APPGKRKVVV ATNIAEASLT IDGIYYVIDP GFAKQNVYNP KQGLDSLVIT PISQASAKQR AGRAGRTGPG KCYRLYTESA FHSEMSPTAV
501: PEIQRINLGN TVIMMKAMGI NDLLSFDFMD PPTPQALISA MEQLYTLGAL DEEGLLTKLG RKMAEFPLDP PLSKMLLASV DFGCSDEILT IIAMIQTGNV
601: FYRPREKQAQ ADQKKAKFFQ PEGDHLTLLA VYEAWKAKNF SGPWCFENFV QSRSLRRAQD VRKQLLSIMD KYKLDVVSAG KNFAKIQKAI GAGFFFHAAR
701: KDPQEGYRTL VENQPVYIHP SSALFQRQPD WVIYHELVMT TKEYMREVTV VDPKWLVELA PRFFKTADPT KLTKRKRQER IEPLYDRYNE PNSWRLSKRR
801: A
101: GERHLAQELR GVGLSAYDMP EWKKDAYGKA VTFGQRSKLS LQEQRQSLPI YKLKKELVQA VHDNQVLVVI GETGSGKTTQ VTQYLAEAGY TTRGKIGCTQ
201: PRRVAATSVA KRVAEEFGCR LGEEVGYAIR FEDCTGPETV IKYMTDGMLW REILIDDNLS QYSVIMLDEA HERTINTDVL FGLLKQLLKR RPDLRLIVTS
301: ATLDAEKFSG YFFDCNIFTI PGRTFPVEIL YTKQPESDYL DASLITVMQI HLTEPEGDIL LFLTGQEEID YACQCLYERM KGLGKNVPEL IILPVYSALP
401: SEMQSRIFDP APPGKRKVVV ATNIAEASLT IDGIYYVIDP GFAKQNVYNP KQGLDSLVIT PISQASAKQR AGRAGRTGPG KCYRLYTESA FHSEMSPTAV
501: PEIQRINLGN TVIMMKAMGI NDLLSFDFMD PPTPQALISA MEQLYTLGAL DEEGLLTKLG RKMAEFPLDP PLSKMLLASV DFGCSDEILT IIAMIQTGNV
601: FYRPREKQAQ ADQKKAKFFQ PEGDHLTLLA VYEAWKAKNF SGPWCFENFV QSRSLRRAQD VRKQLLSIMD KYKLDVVSAG KNFAKIQKAI GAGFFFHAAR
701: KDPQEGYRTL VENQPVYIHP SSALFQRQPD WVIYHELVMT TKEYMREVTV VDPKWLVELA PRFFKTADPT KLTKRKRQER IEPLYDRYNE PNSWRLSKRR
801: A
0001: MEKEELNKLN HLSLVSNVCN ELETHLGSAE KVLAEFIIDL GRHSETVDEF DKNLKEAGAE MPDYFVRSLL TTIHGIYPPK PKSEKKKEEG DDQKFKGLAI
0101: KDTKDKVKEL EKEIEREAEE RRREEDRNRD RDRRESGRDR DRDRNRDRDD RRDRHRDRER NRGDEEGEDR RSDRRHRERG RGDGGEGEDR RRDRRAKDEY
0201: VEEDKGGANE PELYQVYKGR VTRVMDAGCF VQFDKFRGKE GLVHVSQMAT RRVDKAKEFV KRDMEVYVKV ISISSDKYSL SMRDVDQNTG RDLIPLRKPS
0301: DEDDSSRSNP SYRTKDGQVT KTGISGIRIV EENDVAPSRR PLKKMSSPER WEAKQLIASG VLRVDEFPMY DEDGDGMLYQ EEGAEEELEI EMNEDEPAFL
0401: QGQTRYSVDM SPVKIFKNPE GSLSRAAALQ SALTKERREM REQQQRTMLD SIPKDLNRPW EDPMPETGER HLAQELRGVG LSAYDMPEWK KDAFGKTPTF
0501: GQRSKLSIQE QRESLPIYKL KKELIQAVHD NQVLVVIGET GSGKTTQVTQ YLAEAGYTTK GKIGCTQPRR VAAMSVAKRV AEEFGCRLGE EVGYAIRFED
0601: CTGPDTVIKY MTDGMLLREI LIDENLSQYS VIMLDEAHER TIHTDVLFGL LKKLMKRRLD LRLIVTSATL DAEKFSGYFF NCNIFTIPGR TFPVEILYTK
0701: QPETDYLDAA LITVLQIHLT EPEGDILVFL TGQEEIDSAC QSLYERMKGL GKNVPELIIL PVYSALPSEM QSRIFDPPPP GKRKVVVATN IAEASLTIDG
0801: IYYVVDPGFA KQNVYNPKQG LESLVITPIS QASAKQRAGR AGRTGPGKCY RLYTESAYRN EMPPTSIPEI QRINLGMTTL TMKAMGINDL LSFDFMDPPQ
0901: PQALISAMEQ LYSLGALDEE GLLTKLGRKM AEFPLEPPLS KMLLASVDLG CSDEILTMIA MIQTGNIFYR PREKQAQADQ KRAKFFQPEG DHLTLLAVYE
1001: AWKAKNFSGP WCFENFIQSR SLRRAQDVRK QLLSIMDKYK LDVVTAGKNF TKIRKAITAG FFFHGARKDP QEGYRTLVEN QPVYIHPSSA LFQRQPDWVI
1101: YHDLVMTTKE YMREVTVIDP KWLVELAPRF FKVSDPTKMS KRKRQERIEP LYDRYHEPNS WRLSKRRA
0101: KDTKDKVKEL EKEIEREAEE RRREEDRNRD RDRRESGRDR DRDRNRDRDD RRDRHRDRER NRGDEEGEDR RSDRRHRERG RGDGGEGEDR RRDRRAKDEY
0201: VEEDKGGANE PELYQVYKGR VTRVMDAGCF VQFDKFRGKE GLVHVSQMAT RRVDKAKEFV KRDMEVYVKV ISISSDKYSL SMRDVDQNTG RDLIPLRKPS
0301: DEDDSSRSNP SYRTKDGQVT KTGISGIRIV EENDVAPSRR PLKKMSSPER WEAKQLIASG VLRVDEFPMY DEDGDGMLYQ EEGAEEELEI EMNEDEPAFL
0401: QGQTRYSVDM SPVKIFKNPE GSLSRAAALQ SALTKERREM REQQQRTMLD SIPKDLNRPW EDPMPETGER HLAQELRGVG LSAYDMPEWK KDAFGKTPTF
0501: GQRSKLSIQE QRESLPIYKL KKELIQAVHD NQVLVVIGET GSGKTTQVTQ YLAEAGYTTK GKIGCTQPRR VAAMSVAKRV AEEFGCRLGE EVGYAIRFED
0601: CTGPDTVIKY MTDGMLLREI LIDENLSQYS VIMLDEAHER TIHTDVLFGL LKKLMKRRLD LRLIVTSATL DAEKFSGYFF NCNIFTIPGR TFPVEILYTK
0701: QPETDYLDAA LITVLQIHLT EPEGDILVFL TGQEEIDSAC QSLYERMKGL GKNVPELIIL PVYSALPSEM QSRIFDPPPP GKRKVVVATN IAEASLTIDG
0801: IYYVVDPGFA KQNVYNPKQG LESLVITPIS QASAKQRAGR AGRTGPGKCY RLYTESAYRN EMPPTSIPEI QRINLGMTTL TMKAMGINDL LSFDFMDPPQ
0901: PQALISAMEQ LYSLGALDEE GLLTKLGRKM AEFPLEPPLS KMLLASVDLG CSDEILTMIA MIQTGNIFYR PREKQAQADQ KRAKFFQPEG DHLTLLAVYE
1001: AWKAKNFSGP WCFENFIQSR SLRRAQDVRK QLLSIMDKYK LDVVTAGKNF TKIRKAITAG FFFHGARKDP QEGYRTLVEN QPVYIHPSSA LFQRQPDWVI
1101: YHDLVMTTKE YMREVTVIDP KWLVELAPRF FKVSDPTKMS KRKRQERIEP LYDRYHEPNS WRLSKRRA
Arabidopsis Description
Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 [Source:UniProtKB/Swiss-Prot;Acc:Q38953]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.