Factsheet for Bra025211.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY13640	Canola	nucleus	95.13	99.02
CDX83624	Canola	nucleus	94.11	98.83
Os02t0301500-01	Rice	nucleus	43.89	94.14
PGSC0003DMT400084916	Potato	nucleus	62.77	91.76
AT3G26560.1	Thale cress	nucleus	89.92	90.15
Bra040091.1-P	Field mustard	nucleus	59.27	87.74
VIT_08s0056g00470.t01	Wine grape	nucleus	83.26	82.98
Solyc01g110990.2.1	Tomato	nucleus	76.52	80.65
GSMUA_Achr10P...	Banana	nucleus	66.78	80.21
Solyc07g039550.2.1	Tomato	nucleus	81.13	79.83
PGSC0003DMT400056692	Potato	nucleus	76.0	78.0
Zm00001d015893_P001	Maize	nucleus, plasma membrane	79.59	75.4
EER95349	Sorghum	nucleus	79.76	75.2
TraesCS4B01G148500.1	Wheat	nucleus	78.74	74.72
TraesCS4A01G158200.1	Wheat	nucleus	78.48	74.47
HORVU0Hr1G007860.1	Barley	nucleus	78.65	74.15
EES15324	Sorghum	nucleus	66.18	72.36
Os06t0343100-01	Rice	nucleus	66.78	72.14
TraesCS4D01G147900.1	Wheat	nucleus	78.65	71.45
TraesCS7B01G245800.1	Wheat	nucleus	65.24	71.0
TraesCS7D01G341800.1	Wheat	nucleus	65.33	70.7
Zm00001d031581_P002	Maize	nucleus	65.67	58.08
Bra040328.1-P	Field mustard	cytosol, mitochondrion	9.31	50.93
Bra003744.1-P	Field mustard	nucleus	28.69	50.15
Bra007671.1-P	Field mustard	nucleus	30.74	50.14
Bra000445.1-P	Field mustard	cytosol	30.57	49.52
Bra001237.1-P	Field mustard	cytosol	17.59	47.69
Bra001238.1-P	Field mustard	cytosol, mitochondrion	10.25	45.45
Bra011023.1-P	Field mustard	nucleus	26.47	44.99
Bra038498.1-P	Field mustard	nucleus	33.99	44.17
Bra013313.1-P	Field mustard	nucleus	26.22	44.05
Bra010915.1-P	Field mustard	nucleus	24.94	41.42
Bra024720.1-P	Field mustard	nucleus	25.96	41.3
Bra010168.1-P	Field mustard	nucleus	36.04	40.42
Bra023387.1-P	Field mustard	nucleus	36.64	34.38
Bra023043.1-P	Field mustard	nucleus	21.43	25.23
Bra018747.1-P	Field mustard	plastid	22.46	22.29
Bra009414.1-P	Field mustard	mitochondrion	21.78	22.08
Bra024903.1-P	Field mustard	nucleus	20.92	21.59
Bra032998.1-P	Field mustard	nucleus	22.46	21.26
Bra021665.1-P	Field mustard	nucleus	18.62	16.7
Bra018293.1-P	Field mustard	plasma membrane, vacuole	18.36	16.29
Bra027890.1-P	Field mustard	nucleus	18.02	15.86
Bra006057.1-P	Field mustard	plastid	22.37	14.93
Bra009038.1-P	Field mustard	plastid	22.29	14.77

Protein Annotations

Gene3D:2.40.50.140	Gene3D:3.40.50.300	MapMan:35.1	EnsemblPlantsGene:Bra025211	EnsemblPlants:Bra025211.1	EnsemblPlants:Bra025211.1-P
ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DNA/RNA_helicase_DEAH_CS	InterPro:DUF1605	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787
InterPro:Helicase-assoc_dom	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR003029	InterPro:IPR014001
UniProt:M4E8V5	InterPro:NA-bd_OB-fold	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF00575
PFAM:PF04408	PFAM:PF07717	ScanProsite:PS00690	PFscan:PS50126	PFscan:PS51192	PFscan:PS51194
PANTHER:PTHR18934	PANTHER:PTHR18934:SF120	InterPro:S1_dom	InterPro:S1_domain	SMART:SM00316	SMART:SM00487
SMART:SM00490	SMART:SM00847	SUPFAM:SSF50249	SUPFAM:SSF52540	UniParc:UPI000253F694	SEG:seg

Description

AT3G26560 (E=0.0) | ATP-dependent RNA helicase, putative

Coordinates

chrA06:+:22737052..22741016

Molecular Weight (calculated)

133655.0 Da

IEP (calculated)

6.936

GRAVY (calculated)

-0.704

Length

1171 amino acids

Sequence
(BLAST)

0001: MEKKELNKLN HLSLVSNICN ELETHLGQAP KDLAEYIIHL GRNSETADEL DKKLKKDGAE LPDYFVRSLL TVIHGIYPPQ PKSDDVEEDG GEKERFKGLA
0101: IRDTKDKVKE LEKEIEREAQ ERQREEDRNR RGSGRDRDRD DRRDRYGDGD DRRSDRHRGR YDEGDRHRGR DRGDDRGGRH RGRSRGDDEG GEGRSDRRRD
0201: RGVQDEYTGA NEPELYQVYK GRVTRVMDSG CFVQFDRFRG KEGLVHVSQM ATRRVDRAES VVKRDMEVYV KVVSIKEGGK YSLSMKDVDQ NTGRDLIPLK
0301: KPSDDDDLGR SNPSYRTKDG QVTKTGISGI RIVEESNVAP SRRPLKKMSS PERWEAKQLI AAGALKASEF PDYDEDGDGM LYQEEGAEEE LEIEMNEEEP
0401: AFLQGQTRYS VDMSPVKIFK NPEGSLSRAA ALQSALTKER REMREQQQRT MLDSIPKDLN RPWEDPMPET GERHLAQELR GVGLSAYDMP EWKKDAFGKT
0501: PTFGQRSKLS IQEQRESLPI YKLKKELIQA VHDNQVLVVI GETGSGKTTQ VTQYLAEAGY TTKGKIGCTQ PRRVAAMSVA KRVAEEFGCR LGEEVGYAIR
0601: FEDCTGPDTV IKYMTDGMLL REILIDENLS QYSVIMLDEA HERTIHTDVL FGLLKKLLKR RLDLRLIVTS ATLDAEKFSG YFFNCNIFTI PGRTFPVEIL
0701: YTKQPESDYL DAALITVLQI HLTEPEGDIL LFLTGQEEID SACQSLYERM KNLGKNVPEL IILPVYSALP SEMQSRIFDP PPPGTRKVVV ATNIAEASLT
0801: IDGIYYVVDP GFAKQNVYNP KQGLESLVIT PISQASAKQR AGRAGRTGPG KCYRLYTESA YRNEMPPTSI PEIQRINLGM TTLTMKAMGI NDLLSFDFMD
0901: PPQPQALISA MEQLYSLGAL DEEGLLTKLG RKMAEFPLEP PLSKMLLASV DLGCSDEILT MIAMIQTGNI FYRPREKQAQ ADQKRAKFFQ PEGDHLTLLA
1001: VYEAWKAKNF SGPWCFENFI QSRSLRRAQD VRKQLLSIMD KYKLDVVSAG KNFTKIRKAI TAGFFFHGAR KDPQEGYRTL VENQPVYIHP SSALFQRQPD
1101: WVIYHDLVMT TKEYMREVTV IDPKWLVELA PRFFKVADPT HMSKRKRQER IEPLYDRYHE PNSWRLSKRR A

Best Arabidopsis Sequence Match ( AT3G26560.1 )
(BLAST)

0001: MEKEELNKLN HLSLVSNVCN ELETHLGSAE KVLAEFIIDL GRHSETVDEF DKNLKEAGAE MPDYFVRSLL TTIHGIYPPK PKSEKKKEEG DDQKFKGLAI
0101: KDTKDKVKEL EKEIEREAEE RRREEDRNRD RDRRESGRDR DRDRNRDRDD RRDRHRDRER NRGDEEGEDR RSDRRHRERG RGDGGEGEDR RRDRRAKDEY
0201: VEEDKGGANE PELYQVYKGR VTRVMDAGCF VQFDKFRGKE GLVHVSQMAT RRVDKAKEFV KRDMEVYVKV ISISSDKYSL SMRDVDQNTG RDLIPLRKPS
0301: DEDDSSRSNP SYRTKDGQVT KTGISGIRIV EENDVAPSRR PLKKMSSPER WEAKQLIASG VLRVDEFPMY DEDGDGMLYQ EEGAEEELEI EMNEDEPAFL
0401: QGQTRYSVDM SPVKIFKNPE GSLSRAAALQ SALTKERREM REQQQRTMLD SIPKDLNRPW EDPMPETGER HLAQELRGVG LSAYDMPEWK KDAFGKTPTF
0501: GQRSKLSIQE QRESLPIYKL KKELIQAVHD NQVLVVIGET GSGKTTQVTQ YLAEAGYTTK GKIGCTQPRR VAAMSVAKRV AEEFGCRLGE EVGYAIRFED
0601: CTGPDTVIKY MTDGMLLREI LIDENLSQYS VIMLDEAHER TIHTDVLFGL LKKLMKRRLD LRLIVTSATL DAEKFSGYFF NCNIFTIPGR TFPVEILYTK
0701: QPETDYLDAA LITVLQIHLT EPEGDILVFL TGQEEIDSAC QSLYERMKGL GKNVPELIIL PVYSALPSEM QSRIFDPPPP GKRKVVVATN IAEASLTIDG
0801: IYYVVDPGFA KQNVYNPKQG LESLVITPIS QASAKQRAGR AGRTGPGKCY RLYTESAYRN EMPPTSIPEI QRINLGMTTL TMKAMGINDL LSFDFMDPPQ
0901: PQALISAMEQ LYSLGALDEE GLLTKLGRKM AEFPLEPPLS KMLLASVDLG CSDEILTMIA MIQTGNIFYR PREKQAQADQ KRAKFFQPEG DHLTLLAVYE
1001: AWKAKNFSGP WCFENFIQSR SLRRAQDVRK QLLSIMDKYK LDVVTAGKNF TKIRKAITAG FFFHGARKDP QEGYRTLVEN QPVYIHPSSA LFQRQPDWVI
1101: YHDLVMTTKE YMREVTVIDP KWLVELAPRF FKVSDPTKMS KRKRQERIEP LYDRYHEPNS WRLSKRRA

Arabidopsis Description

Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 [Source:UniProtKB/Swiss-Prot;Acc:Q38953]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.