Factsheet for Bra010168.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY26898	Canola	nucleus	99.71	99.71
Bra040328.1-P	Field mustard	cytosol, mitochondrion	19.06	92.99
AT1G32490.1	Thale cress	cytosol	92.82	92.82
Os08t0335000-00	Rice	cytosol, nucleus	28.74	81.74
GSMUA_Achr4P23370_001	Banana	nucleus	54.69	76.13
Zm00001d049980_P001	Maize	plasma membrane	49.9	74.64
KXG30390	Sorghum	nucleus	70.4	70.27
TraesCS4B01G374800.1	Wheat	nucleus	69.73	69.6
EES02741	Sorghum	nucleus	69.73	69.6
TraesCS4D01G362600.1	Wheat	nucleus	69.54	69.41
HORVU4Hr1G088270.17	Barley	mitochondrion	67.15	64.91
Bra038498.1-P	Field mustard	nucleus	53.35	61.82
Bra003744.1-P	Field mustard	nucleus	32.09	50.0
Bra007671.1-P	Field mustard	nucleus	33.33	48.47
Bra001237.1-P	Field mustard	cytosol	19.83	47.92
Bra000445.1-P	Field mustard	cytosol	32.28	46.61
Bra001238.1-P	Field mustard	cytosol, mitochondrion	11.69	46.21
Bra011023.1-P	Field mustard	nucleus	29.21	44.27
Bra013313.1-P	Field mustard	nucleus	29.41	44.05
Bra024720.1-P	Field mustard	nucleus	29.41	41.71
Bra010915.1-P	Field mustard	nucleus	27.11	40.14
Bra025211.1-P	Field mustard	nucleus	40.42	36.04
Bra023387.1-P	Field mustard	nucleus	36.59	30.61
Bra040091.1-P	Field mustard	nucleus	22.99	30.34
Bra023043.1-P	Field mustard	nucleus	23.85	25.03
Bra024903.1-P	Field mustard	nucleus	24.14	22.2
Bra018747.1-P	Field mustard	plastid	24.71	21.86
Bra032998.1-P	Field mustard	nucleus	25.19	21.26
Bra009414.1-P	Field mustard	mitochondrion	22.89	20.69
Bra021665.1-P	Field mustard	nucleus	20.21	16.17
Bra018293.1-P	Field mustard	plasma membrane, vacuole	20.31	16.06
Bra027890.1-P	Field mustard	nucleus	19.92	15.64
Bra009038.1-P	Field mustard	plastid	24.43	14.43
Bra006057.1-P	Field mustard	plastid	24.04	14.3

Protein Annotations

Gene3D:1.20.120.1080	MapMan:16.4.7.1.5	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra010168	EnsemblPlants:Bra010168.1	EnsemblPlants:Bra010168.1-P
ncoils:Coil	InterPro:DNA/RNA_helicase_DEAH_CS	InterPro:DUF1605	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787	InterPro:Helicase-assoc_dom	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	UniProt:M4D119	InterPro:P-loop_NTPase	PFAM:PF00271
PFAM:PF04408	PFAM:PF07717	ScanProsite:PS00690	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR18934
PANTHER:PTHR18934:SF117	SMART:SM00487	SMART:SM00490	SMART:SM00847	SUPFAM:SSF52540	UniParc:UPI000253F7DA
SEG:seg	:	:	:	:	:

Description

AT1G32490 (E=0.0) EMB2733, ESP3 | ESP3 (ENHANCED SILENCING PHENOTYPE 3); ATP binding / ATP-dependent RNA helicase/ ATP-dependent helicase/ helicase/ nucleic acid binding

Coordinates

chrA06:-:20414789..20421609

Molecular Weight (calculated)

119010.0 Da

IEP (calculated)

5.258

GRAVY (calculated)

-0.627

Length

1044 amino acids

Sequence
(BLAST)

0001: MASNDLKTWV SDKLMGLLGY SQITLVNYVI VKAKQSKSPA ELVGVLMDNG FASSGDTRSF AEEIFARVPH QTAAVNLYQQ REAEAAMLVR KQQTYALIDD
0101: DDDDEDEVVK EKKPSASESK KSDKGKKRFR KKSGQSDDSD EEVPVREDSR HVRRKVSEDE DDGSESEEER VRDQKEKEEL EQHIRDRDTA RTRKLTEQKL
0201: SKKEQEEALR RANALEEDDL NSLRKVSRQE YLRKREQKKL EELRDEIEDE QYLFADEKLT ETELREFRYK KELYDLVKKR TQDEDNVEEY RIPDAYDDQE
0301: GGVDQEKRFA VAVQRYKDLD SREKMDPFAE QEAWEDHQIG KARLKFGSKN KKASDDYQFV FEDQINFIKE SVMAGENYED DMHPKEAQDA AEKTALEELQ
0401: EVRKSLPIYG YREQLLQAVE EHQVLVIVGD TGSGKTTQIP QYLHEAGYTK RGKVGCTQPR RVAAMSVAAR VAQEMGVKLG HEVGYSIRFE DCTSDKTVLK
0501: YMTDGMLLRE LLGEPDLASY SVVIVDEAHE RTLSTDILFG LDIARFRPDL KLLISSATMD AEKFSDYFDT APIFSFPGRR YPVEINFTSA PEADYMDAAI
0601: VTVLTIHVRE PLGDILVFLT GQEEIETAEE ILKQRIRGLG TKIRELIICP IYANLPSELQ AKIFEPTPEG ARKVVLATNI AETSLTIDGI KYVVDPGFSK
0701: MKSYNPRTGM ESLLITPISK ASATQRAGRA GRTSAGKCYR LYTAFNYNND LEENTVPEVQ RTNLASVVLA LKSLGIHDLI NFDFMDPPPA EALVKALELL
0801: FALGALNKLG ELTKAGRRMA EFPLDPMLSK MIVVSDKYKC SDEVISIAAM LSVGGSIFYR PKDKQVHADN ARMNFHTGNV GDHIALLKVY SSWKETNYST
0901: QWCYENYIQV RSMKRARDIR DQLEGLLERV EIEISSNMNE LDSVRKSIVA GFFPHTAKLQ KNGSYRTVKH PQTVHIHPNS GLSQVLPRWV VYHELVLTSK
1001: EYMRQVTELK PEWLIELAPH YYQRKDVEDD ASKKMPKGAG KAAI

Best Arabidopsis Sequence Match ( AT1G32490.1 )
(BLAST)

0001: MASNDLKTWV SDKLMMLLGY SQAAVVNYLI AMAKKTKSPT ELVGELVDYG FSSSGDTRSF AEEIFARVPR KTAGVNLYQK HEAEAAMLVR KQKTYALLDA
0101: DDDEDEVVVE KKSSVSESRK SDKGKKRFRK KSGQSDESDG EVAVREDSRH VRRKVSEEDD GSESEEERVR DQKEREELEQ HLKDRDTART RKLTEQTLSK
0201: KEKEEAVRRA NALEKDDLYS LRKVSRQEYL KKREQKKLDE LRDEIEDEQY LFGGEKLTET ELREFRYKKE LYDLVKKRTQ DEDNVEEYRI PDAYDQEGGV
0301: DQEKRFSVAV QRYRDLDSTE KMNPFAEQEA WEDHQIGKAT LKFGAKNKQA SDDYQFVFED QINFIKESVM AGENYEDAMD AKQKSQDLAE KTALEELQEV
0401: RRSLPIYTYR DQLLKAVEEH QVLVIVGDTG SGKTTQIPQY LHEAGYTKRG KVGCTQPRRV AAMSVAARVA QEMGVKLGHE VGYSIRFEDC TSDKTVLKYM
0501: TDGMLLRELL GEPDLASYSV VIVDEAHERT LSTDILFGLV KDIARFRPDL KLLISSATMD AEKFSDYFDT APIFSFPGRR YPVEINYTSA PEADYMDAAI
0601: VTILTIHVRE PLGDILVFFT GQEEIETAEE ILKHRIRGLG TKIRELIICP IYANLPSELQ AKIFEPTPEG ARKVVLATNI AETSLTIDGI KYVVDPGFSK
0701: MKSYNPRTGM ESLLITPISK ASATQRAGRA GRTSPGKCYR LYTAFNYNND LEENTVPEVQ RTNLASVVLA LKSLGIHDLI NFDFMDPPPA EALVKSLELL
0801: FALGALNKLG ELTKAGRRMA EFPLDPMLSK MIVVSDKYKC SDEIISIAAM LSIGGSIFYR PKDKQVHADN ARMNFHTGNV GDHIALLKVY SSWKETNFST
0901: QWCYENYIQV RSMKRARDIR DQLEGLLERV EIDISSNLNE LDSVRKSIVA GFFPHTAKLQ KNGSYRTVKH PQTVHIHPNS GLSQVLPRWV VYHELVLTSK
1001: EYMRQVTELK PEWLIELAPH YYQLKDVEDA ASKKMPKGAG KAAM

Arabidopsis Description

ESP3ESP3 [Source:UniProtKB/TrEMBL;Acc:A0A178W3A5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.