Factsheet for Bra023387.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85676	Canola	nucleus	99.52	99.52
CDX91151	Canola	nucleus	99.04	98.96
AT5G13010.1	Thale cress	nucleus	90.22	89.72
VIT_01s0010g02920.t01	Wine grape	nucleus	62.18	88.69
Solyc12g089010.1.1	Tomato	nucleus	52.0	80.12
TraesCS3D01G264900.1	Wheat	plastid	56.49	76.55
Solyc10g076910.1.1	Tomato	nucleus	77.8	75.56
PGSC0003DMT400018531	Potato	nucleus	77.8	75.56
KRH23170	Soybean	nucleus	76.52	75.14
KRH10165	Soybean	nucleus	76.2	74.76
PGSC0003DMT400039875	Potato	nucleus	54.65	73.89
TraesCS2B01G249700.1	Wheat	nucleus	73.0	72.13
HORVU2Hr1G047870.2	Barley	nucleus	72.84	71.97
TraesCS2A01G233700.1	Wheat	nucleus	72.68	71.81
KXG36287	Sorghum	nucleus	72.92	70.82
Os07t0508000-01	Rice	nucleus	72.6	70.78
Zm00001d006459_P003	Maize	plastid	71.79	66.57
TraesCS2D01G231900.1	Wheat	nucleus	72.84	64.79
Bra040328.1-P	Field mustard	cytosol, mitochondrion	7.93	46.26
Bra003744.1-P	Field mustard	nucleus	23.16	43.13
Bra001237.1-P	Field mustard	cytosol	14.66	42.36
Bra007671.1-P	Field mustard	nucleus	23.8	41.36
Bra000445.1-P	Field mustard	cytosol	23.88	41.22
Bra013313.1-P	Field mustard	nucleus	22.6	40.46
Bra010915.1-P	Field mustard	nucleus	22.68	40.14
Bra001238.1-P	Field mustard	cytosol, mitochondrion	8.41	39.77
Bra011023.1-P	Field mustard	nucleus	21.15	38.32
Bra038498.1-P	Field mustard	nucleus	27.4	37.96
Bra024720.1-P	Field mustard	nucleus	22.12	37.5
Bra025211.1-P	Field mustard	nucleus	34.38	36.64
Bra010168.1-P	Field mustard	nucleus	30.61	36.59
Bra040091.1-P	Field mustard	nucleus	20.11	31.73
Bra023043.1-P	Field mustard	nucleus	19.39	24.32
Bra018747.1-P	Field mustard	plastid	21.31	22.54
Bra009414.1-P	Field mustard	mitochondrion	20.51	22.16
Bra024903.1-P	Field mustard	nucleus	20.11	22.11
Bra032998.1-P	Field mustard	nucleus	20.75	20.94
Bra021665.1-P	Field mustard	nucleus	17.55	16.78
Bra018293.1-P	Field mustard	plasma membrane, vacuole	17.71	16.74
Bra027890.1-P	Field mustard	nucleus	16.03	15.04
Bra006057.1-P	Field mustard	plastid	19.55	13.9
Bra009038.1-P	Field mustard	plastid	19.39	13.7

Protein Annotations

Gene3D:1.20.120.1080	MapMan:16.4.7.1.6	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra023387	EnsemblPlants:Bra023387.1	EnsemblPlants:Bra023387.1-P
ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DUF1605	GO:GO:0000003	GO:GO:0000166	GO:GO:0000398
GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006412
GO:GO:0006950	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008380	GO:GO:0009058
GO:GO:0009605	GO:GO:0009607	GO:GO:0009653	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793
GO:GO:0009817	GO:GO:0009987	GO:GO:0010051	GO:GO:0010467	GO:GO:0016049	GO:GO:0016246
GO:GO:0016787	GO:GO:0019538	GO:GO:0030154	GO:GO:0031053	GO:GO:0033120	GO:GO:0040007
GO:GO:0040029	GO:GO:0048364	GO:GO:0048767	InterPro:Helicase-assoc_dom	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	UniProt:M4E3N4	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271
PFAM:PF04408	PFAM:PF07717	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR18934	PANTHER:PTHR18934:SF91
SMART:SM00487	SMART:SM00490	SMART:SM00847	SUPFAM:SSF52540	UniParc:UPI0002543416	SEG:seg

Description

AT5G13010 (E=0.0) EMB3011 | EMB3011 (embryo defective 3011); ATP binding / RNA helicase/ helicase/ nucleic acid binding

Coordinates

chrA02:+:3138637..3144594

Molecular Weight (calculated)

141085.0 Da

IEP (calculated)

6.500

GRAVY (calculated)

-0.702

Length

1248 amino acids

Sequence
(BLAST)

0001: MGVDPFKAAE TSETEKETGG DLPVKEKLTF TAPERKSRLG LDVRAMEKRE SAKSQGEFKV PRKPAVSVSA SMDEDDRSGV SGIDDGGDNS RPDHSSRRYR
0101: DKSSRSETPQ ESTVTTEKAA ASATPRTSRY ERDDSSRNRN EYRYDRSETP RSRQRSTYDE MDRYRGRESY RESPRDYHGE KRGRYSVDRR TPGRSDWDDG
0201: RWEWEDSPRG DRDSTYNKRH QPSPSPMLGA ASPDARLASP WLDTPRSTMA SASPWDIGAP SPVPIRASGS SVRSSGSRYG GRSNQRADSR EGDLTKEGHP
0301: DEDRSEGAEE FNHEITDTMR REMEYHSDLA WYDTDEGNSL FDADSASFFL GDDASVQKKE AELAKRLVRR DGSKMSLAQS KKYSQLNADN AQWEDRQLLR
0401: SGAVRGTEVQ TEFDSEEERK AILLVHDTKP PFLDGRIVFT KQAEPVMPIK DPTSDMAIIS RKGSGLVREI REKQSMHKSR QRFWELAGSN LGNILGVEKT
0501: AEQIDADTAE VGDEGEVDFK NEAKFAQHMK KGEAVSEFAM SKTMAQQRQY LPIFSVRDDL LQVIRENQVI VVVGETGSGK TTQLTQYLHE DGYTVNGIVG
0601: CTQPRRVAAM SVAKRVSEEM ETELGDKVGY AIRFEDVTGP NTVIKYMTDG VLLRETLKDS DLDKYRVVVM DEAHERSLNT DVLFGILKKV VARRRDFKLI
0701: VTSATLNAQK FSDFFGSVPI FNIPGRTFPV NILYSKSPCE DYVEAAVKQA MTIHITSPPG DILIFMTGQD EIEAACFSLK ERMEQLIASS KRDVTNLLIL
0801: PIYSQLPADL QAKIFQKPED GARKCIVATN IAETSLTVDG IYYVIDTGYG KMKVFNPRMG MDALQVFPIS RAASDQRAGR AGRTGPGTCY RLYTESAYLN
0901: EMLPSPVPEI QRTNLGNVVL LLKSLKIDNL LEFDFMDPPP QENILNSMYQ LWVLGALSNV GGLTDLGWKM VEFPLDPPLA KMLLMGERLD CIDEVLTIVS
1001: MLSVPSVFFR PKERAEESDA AREKFFVPES DHLTLLNVYK QWKEHDYRGD WCNDHYLQVK GLRKAREVRS QLLDILKQLK IPLKSCGPDW DIVRKAICSA
1101: YFHNSARLKG VGEYVNCRTG MPCHLHPSSA LYGLGYTPDY VVYHELILTT KEYMQCATSV EPHWLAELGP MFFSVKDSDT SMLEHKKKQK EEKTAMEEEM
1201: EKLRRDQAEA EVRSKEREKR KRAKQQQQVS GPGMKKGTTY LRPKKFGL

Best Arabidopsis Sequence Match ( AT5G13010.1 )
(BLAST)

0001: MGVDPFKTTE TLEADKETNG GVPVKDKLTF KAPERKSRLG LDARAIEKKD NAKTEGEFKV PKKSAISVTS SLDEEDKSDV SGLDFGTENT RPVHSSRRYR
0101: EKSSRSQSAQ ESTVTTENAG TSDISITPRT LSCTSSYERG GSNRHREEHR RDRSETPRSR QRNTYDEMDH YRRRESYRQS DRDYHGEKRR RYNSDWRTPG
0201: RSDWDDGQDE WERSPHGDRG SSYSRRPQPS PSPMLAAASP DARLASPWLD TPRSTMSSAS PWDMGAPSPI PIRASGSSIR SSSSRYGGRS NQLAYSREGD
0301: LTNEGHSDED RSQGAEEFKH EITETMRVEM EYQSDRAWYD TDEGNSLFDA DSASFFLGDD ASLQKKETEL AKRLVRRDGS KMSLAQSKKY SQLNADNAQW
0401: EDRQLLRSGA VRGTEVQTEF DSEEERKAIL LVHDTKPPFL DGRVVYTKQA EPVMPVKDPT SDMAIISRKG SGLVKEIREK QSANKSRQRF WELAGSNLGN
0501: ILGIEKSAEQ IDADTAVVGD DGEVDFKGEA KFAQHMKKGE AVSEFAMSKT MAEQRQYLPI FSVRDELLQV IRENQVIVVV GETGSGKTTQ LTQYLHEDGY
0601: TINGIVGCTQ PRRVAAMSVA KRVSEEMETE LGDKIGYAIR FEDVTGPNTV IKYMTDGVLL RETLKDSDLD KYRVVVMDEA HERSLNTDVL FGILKKVVAR
0701: RRDFKLIVTS ATLNAQKFSN FFGSVPIFNI PGRTFPVNIL YSKTPCEDYV EAAVKQAMTI HITSPPGDIL IFMTGQDEIE AACFSLKERM EQLVSSSSRE
0801: ITNLLILPIY SQLPADLQAK IFQKPEDGAR KCIVATNIAE TSLTVDGIYY VIDTGYGKMK VFNPRMGMDA LQVFPISRAA SDQRAGRAGR TGPGTCYRLY
0901: TESAYLNEML PSPVPEIQRT NLGNVVLLLK SLKIDNLLDF DFMDPPPQEN ILNSMYQLWV LGALNNVGGL TDLGWKMVEF PLDPPLAKML LMGERLDCID
1001: EVLTIVSMLS VPSVFFRPKE RAEESDAARE KFFVPESDHL TLLNVYQQWK EHDYRGDWCN DHYLQVKGLR KAREVRSQLL DILKQLKIEL RSCGPDWDIV
1101: RKAICSAYFH NSARLKGVGE YVNCRTGMPC HLHPSSALYG LGYTPDYVVY HELILTTKEY MQCATSVEPH WLAELGPMFF SVKDSDTSML EHKKKQKEEK
1201: SGMEEEMEKL RRDQVESELR SKERERKKRA KQQQQISGPG LKKGTTFLRP KKLGL

Arabidopsis Description

CUVPre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 [Source:UniProtKB/Swiss-Prot;Acc:F4K2E9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.