Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra023387.1-P | Field mustard | nucleus | 98.96 | 99.04 |
| CDX85676 | Canola | nucleus | 98.8 | 98.88 |
| AT5G13010.1 | Thale cress | nucleus | 89.59 | 89.16 |
| VIT_01s0010g02920.t01 | Wine grape | nucleus | 62.21 | 88.8 |
| CDY23802 | Canola | nucleus | 34.03 | 80.95 |
| Solyc12g089010.1.1 | Tomato | nucleus | 51.96 | 80.12 |
| TraesCS3D01G264900.1 | Wheat | plastid | 56.45 | 76.55 |
| Solyc10g076910.1.1 | Tomato | nucleus | 77.5 | 75.33 |
| PGSC0003DMT400018531 | Potato | nucleus | 77.5 | 75.33 |
| KRH23170 | Soybean | nucleus | 76.3 | 74.98 |
| KRH10165 | Soybean | nucleus | 75.98 | 74.61 |
| PGSC0003DMT400039875 | Potato | nucleus | 54.68 | 74.0 |
| TraesCS2B01G249700.1 | Wheat | nucleus | 72.86 | 72.05 |
| HORVU2Hr1G047870.2 | Barley | nucleus | 72.7 | 71.89 |
| TraesCS2A01G233700.1 | Wheat | nucleus | 72.54 | 71.73 |
| Os07t0508000-01 | Rice | nucleus | 72.54 | 70.78 |
| KXG36287 | Sorghum | nucleus | 72.7 | 70.66 |
| Zm00001d006459_P003 | Maize | plastid | 71.74 | 66.57 |
| TraesCS2D01G231900.1 | Wheat | nucleus | 72.7 | 64.72 |
| CDY23338 | Canola | cytosol | 15.85 | 46.92 |
| CDY37024 | Canola | cytosol, mitochondrion | 11.61 | 44.75 |
| CDY68405 | Canola | nucleus | 22.98 | 42.84 |
| CDX74061 | Canola | cytosol | 10.89 | 42.37 |
| CDX95715 | Canola | cytosol | 24.02 | 41.38 |
| CDX76626 | Canola | nucleus | 23.78 | 41.36 |
| CDY11413 | Canola | nucleus | 23.78 | 41.36 |
| CDX83337 | Canola | cytosol | 23.86 | 41.22 |
| CDX74059 | Canola | nucleus | 8.65 | 40.91 |
| CDX99466 | Canola | nucleus | 22.66 | 40.43 |
| CDY11762 | Canola | nucleus | 22.66 | 40.2 |
| CDX90112 | Canola | nucleus | 22.66 | 40.14 |
| CDX78859 | Canola | nucleus | 22.42 | 40.11 |
| CDY40514 | Canola | nucleus | 27.38 | 39.72 |
| CDY60185 | Canola | nucleus | 27.3 | 39.7 |
| CDY34567 | Canola | nucleus | 20.42 | 38.46 |
| CDY36075 | Canola | nucleus | 20.66 | 38.28 |
| CDX85017 | Canola | cytosol, plastid | 22.1 | 38.23 |
| CDY16154 | Canola | nucleus, plastid | 22.1 | 38.17 |
| CDX83624 | Canola | nucleus | 33.95 | 38.03 |
| CDY13640 | Canola | nucleus | 34.19 | 37.96 |
| CDY32702 | Canola | nucleus | 20.42 | 36.85 |
| CDY32278 | Canola | endoplasmic reticulum | 30.58 | 36.59 |
| CDY26898 | Canola | nucleus | 30.58 | 36.59 |
| CDY02818 | Canola | nucleus | 19.22 | 36.14 |
| CDY51663 | Canola | nucleus | 1.68 | 33.33 |
| CDX91491 | Canola | nucleus | 1.6 | 31.75 |
| CDX79642 | Canola | nucleus, vacuole | 19.38 | 23.38 |
| CDX84588 | Canola | plastid, vacuole | 19.38 | 23.38 |
| CDX93688 | Canola | plastid | 21.3 | 22.54 |
| CDY40601 | Canola | nucleus, plastid | 21.22 | 22.44 |
| CDY17694 | Canola | nucleus | 20.26 | 22.29 |
| CDX98799 | Canola | mitochondrion | 20.58 | 22.27 |
| CDX70187 | Canola | mitochondrion | 20.58 | 22.23 |
| CDY57512 | Canola | nucleus | 20.1 | 22.11 |
| CDY48353 | Canola | nucleus | 20.9 | 21.34 |
| CDY34159 | Canola | nucleus | 20.98 | 21.18 |
| CDY10756 | Canola | nucleus | 17.29 | 19.83 |
| CDX97797 | Canola | nucleus | 17.45 | 16.89 |
| CDY29644 | Canola | nucleus | 17.53 | 16.76 |
| CDY29164 | Canola | nucleus | 18.9 | 16.57 |
| CDY39917 | Canola | nucleus | 18.65 | 16.49 |
| CDY63687 | Canola | nucleus, plastid | 14.17 | 15.95 |
| CDY10215 | Canola | nucleus | 16.25 | 15.81 |
| CDX78376 | Canola | plastid | 19.7 | 14.0 |
| CDX81170 | Canola | plastid | 19.38 | 13.73 |
| CDX69841 | Canola | plastid | 19.3 | 13.64 |
| CDX96996 | Canola | nucleus | 19.3 | 13.62 |
Protein Annotations
| Gene3D:1.20.120.1080 | MapMan:16.4.7.1.6 | Gene3D:3.40.50.300 | GO:A0A078DPL6 | EnsemblPlants:CDX91151 | ProteinID:CDX91151 |
| ProteinID:CDX91151.1 | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | InterPro:DUF1605 | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0016787 |
| EnsemblPlantsGene:GSBRNA2T00151944001 | InterPro:Helicase-assoc_dom | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 |
| InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFAM:PF04408 | PFAM:PF07717 | PFscan:PS51192 |
| PFscan:PS51194 | PANTHER:PTHR18934 | PANTHER:PTHR18934:SF91 | SMART:SM00487 | SMART:SM00490 | SMART:SM00847 |
| SUPFAM:SSF52540 | UniParc:UPI0004EEC939 | SEG:seg | : | : | : |
Description
BnaC02g04460D
Coordinates
chrLK031865:-:1036063..1042222
Molecular Weight (calculated)
140978.0 Da
IEP (calculated)
6.357
GRAVY (calculated)
-0.700
Length
1249 amino acids
Sequence
(BLAST)
(BLAST)
0001: MQVDPLKAAD TSETEKESGG GGGGDLPVKE KLTFTAPERK SRLGLDVRAM EKRESAKSQG EFKVPKKPAV SVSASMDEDD RSGVSGIDDG GDNSRPDHSS
0101: RRYRDKSSRS ETPQESTVTT EKAAASDTPR TSRYERDDSS RSRNEYRYDR SETPRSRQRS TYDEIDRYRG RESYRESPRD YHGEKRGRYS VDRRTPDWDD
0201: GRWEWEDSPR GDRDSTYNKR HQPSPSPMLG AASPDARLAS PWLDTPRSTM ASASPWDIGA PSPVPIRASG SSVRSSGSRY GGRSNQRADS REGDLTKEGH
0301: PDEDRSEGAE EFNHEITDTM RREMEYHSDL AWYDTDEGNS LFDADSASFF LGDDASVQKK EAELAKRLVR RDGSKMSLAQ SKKYSQLNAD NAQWEDRQLL
0401: RSGAVRGTEV QTEFDSEEER KAILLVHDTK PPFLDGRIVF TKQAEPVMPI KDPTSDMAII SRKGSGLVRE IREKQSMHKS RQRFWELAGS NLGNILGVEK
0501: TAEQIDADTA EVGDEGEVDF KNEAKFAQHM KKGEAVSEFA MSKTMAQQRQ YLPIFSVRDD LLQVIRENQV IVVVGETGSG KTTQLTQYLH EDGYTVNGIV
0601: GCTQPRRVAA MSVAKRVSEE METELGDKVG YAIRFEDVTG PNTVIKYMTD GVLLRETLKD SDLDKYRVVV MDEAHERSLN TDVLFGILKK VVARRRDFKL
0701: IVTSATLNAQ KFSDFFGSVP IFNIPGRTFP VNILYSKSPC EDYVEAAVKQ AMTIHITSPP GDILIFMTGQ DEIEAACFSL KERMEQLIAS SKRDVTNLLI
0801: LPIYSQLPAD LQAKIFQKPE DGARKCIVAT NIAETSLTVD GIYYVIDTGY GKMKVFNPRM GMDALQVFPI SRAASDQRAG RAGRTGPGTC YRLYTESAYL
0901: NEMLPSPVPE IQRTNLGNVV LLLKSLKIDN LLEFDFMDPP PQENILNSMY QLWVLGALSN VGGLTDLGWK MVEFPLDPPL AKMLLMGERL DCIDEVLTIV
1001: SMLSVPSVFF RPKERAEESD AAREKFFVPE SDHLTLLNVY KQWKEHDYRG DWCNDHYLQV KGLRKAREVR SQLLDILKQL KIPLKSCGPD WDIVRKAICS
1101: AYFHNSARLK GVGEYVNCRT GMPCHLHPSS ALYGLGYTPD YVVYHELILT TKEYMQCATS VEPHWLAELG PMFFSVKDSD TSMLEHKKKQ KEEKTAMEEE
1201: MEKLRRDQAE AEVRSKEREK RKRAKQQQQV SGPGMKKGST YLRPKKFGL
0101: RRYRDKSSRS ETPQESTVTT EKAAASDTPR TSRYERDDSS RSRNEYRYDR SETPRSRQRS TYDEIDRYRG RESYRESPRD YHGEKRGRYS VDRRTPDWDD
0201: GRWEWEDSPR GDRDSTYNKR HQPSPSPMLG AASPDARLAS PWLDTPRSTM ASASPWDIGA PSPVPIRASG SSVRSSGSRY GGRSNQRADS REGDLTKEGH
0301: PDEDRSEGAE EFNHEITDTM RREMEYHSDL AWYDTDEGNS LFDADSASFF LGDDASVQKK EAELAKRLVR RDGSKMSLAQ SKKYSQLNAD NAQWEDRQLL
0401: RSGAVRGTEV QTEFDSEEER KAILLVHDTK PPFLDGRIVF TKQAEPVMPI KDPTSDMAII SRKGSGLVRE IREKQSMHKS RQRFWELAGS NLGNILGVEK
0501: TAEQIDADTA EVGDEGEVDF KNEAKFAQHM KKGEAVSEFA MSKTMAQQRQ YLPIFSVRDD LLQVIRENQV IVVVGETGSG KTTQLTQYLH EDGYTVNGIV
0601: GCTQPRRVAA MSVAKRVSEE METELGDKVG YAIRFEDVTG PNTVIKYMTD GVLLRETLKD SDLDKYRVVV MDEAHERSLN TDVLFGILKK VVARRRDFKL
0701: IVTSATLNAQ KFSDFFGSVP IFNIPGRTFP VNILYSKSPC EDYVEAAVKQ AMTIHITSPP GDILIFMTGQ DEIEAACFSL KERMEQLIAS SKRDVTNLLI
0801: LPIYSQLPAD LQAKIFQKPE DGARKCIVAT NIAETSLTVD GIYYVIDTGY GKMKVFNPRM GMDALQVFPI SRAASDQRAG RAGRTGPGTC YRLYTESAYL
0901: NEMLPSPVPE IQRTNLGNVV LLLKSLKIDN LLEFDFMDPP PQENILNSMY QLWVLGALSN VGGLTDLGWK MVEFPLDPPL AKMLLMGERL DCIDEVLTIV
1001: SMLSVPSVFF RPKERAEESD AAREKFFVPE SDHLTLLNVY KQWKEHDYRG DWCNDHYLQV KGLRKAREVR SQLLDILKQL KIPLKSCGPD WDIVRKAICS
1101: AYFHNSARLK GVGEYVNCRT GMPCHLHPSS ALYGLGYTPD YVVYHELILT TKEYMQCATS VEPHWLAELG PMFFSVKDSD TSMLEHKKKQ KEEKTAMEEE
1201: MEKLRRDQAE AEVRSKEREK RKRAKQQQQV SGPGMKKGST YLRPKKFGL
0001: MGVDPFKTTE TLEADKETNG GVPVKDKLTF KAPERKSRLG LDARAIEKKD NAKTEGEFKV PKKSAISVTS SLDEEDKSDV SGLDFGTENT RPVHSSRRYR
0101: EKSSRSQSAQ ESTVTTENAG TSDISITPRT LSCTSSYERG GSNRHREEHR RDRSETPRSR QRNTYDEMDH YRRRESYRQS DRDYHGEKRR RYNSDWRTPG
0201: RSDWDDGQDE WERSPHGDRG SSYSRRPQPS PSPMLAAASP DARLASPWLD TPRSTMSSAS PWDMGAPSPI PIRASGSSIR SSSSRYGGRS NQLAYSREGD
0301: LTNEGHSDED RSQGAEEFKH EITETMRVEM EYQSDRAWYD TDEGNSLFDA DSASFFLGDD ASLQKKETEL AKRLVRRDGS KMSLAQSKKY SQLNADNAQW
0401: EDRQLLRSGA VRGTEVQTEF DSEEERKAIL LVHDTKPPFL DGRVVYTKQA EPVMPVKDPT SDMAIISRKG SGLVKEIREK QSANKSRQRF WELAGSNLGN
0501: ILGIEKSAEQ IDADTAVVGD DGEVDFKGEA KFAQHMKKGE AVSEFAMSKT MAEQRQYLPI FSVRDELLQV IRENQVIVVV GETGSGKTTQ LTQYLHEDGY
0601: TINGIVGCTQ PRRVAAMSVA KRVSEEMETE LGDKIGYAIR FEDVTGPNTV IKYMTDGVLL RETLKDSDLD KYRVVVMDEA HERSLNTDVL FGILKKVVAR
0701: RRDFKLIVTS ATLNAQKFSN FFGSVPIFNI PGRTFPVNIL YSKTPCEDYV EAAVKQAMTI HITSPPGDIL IFMTGQDEIE AACFSLKERM EQLVSSSSRE
0801: ITNLLILPIY SQLPADLQAK IFQKPEDGAR KCIVATNIAE TSLTVDGIYY VIDTGYGKMK VFNPRMGMDA LQVFPISRAA SDQRAGRAGR TGPGTCYRLY
0901: TESAYLNEML PSPVPEIQRT NLGNVVLLLK SLKIDNLLDF DFMDPPPQEN ILNSMYQLWV LGALNNVGGL TDLGWKMVEF PLDPPLAKML LMGERLDCID
1001: EVLTIVSMLS VPSVFFRPKE RAEESDAARE KFFVPESDHL TLLNVYQQWK EHDYRGDWCN DHYLQVKGLR KAREVRSQLL DILKQLKIEL RSCGPDWDIV
1101: RKAICSAYFH NSARLKGVGE YVNCRTGMPC HLHPSSALYG LGYTPDYVVY HELILTTKEY MQCATSVEPH WLAELGPMFF SVKDSDTSML EHKKKQKEEK
1201: SGMEEEMEKL RRDQVESELR SKERERKKRA KQQQQISGPG LKKGTTFLRP KKLGL
0101: EKSSRSQSAQ ESTVTTENAG TSDISITPRT LSCTSSYERG GSNRHREEHR RDRSETPRSR QRNTYDEMDH YRRRESYRQS DRDYHGEKRR RYNSDWRTPG
0201: RSDWDDGQDE WERSPHGDRG SSYSRRPQPS PSPMLAAASP DARLASPWLD TPRSTMSSAS PWDMGAPSPI PIRASGSSIR SSSSRYGGRS NQLAYSREGD
0301: LTNEGHSDED RSQGAEEFKH EITETMRVEM EYQSDRAWYD TDEGNSLFDA DSASFFLGDD ASLQKKETEL AKRLVRRDGS KMSLAQSKKY SQLNADNAQW
0401: EDRQLLRSGA VRGTEVQTEF DSEEERKAIL LVHDTKPPFL DGRVVYTKQA EPVMPVKDPT SDMAIISRKG SGLVKEIREK QSANKSRQRF WELAGSNLGN
0501: ILGIEKSAEQ IDADTAVVGD DGEVDFKGEA KFAQHMKKGE AVSEFAMSKT MAEQRQYLPI FSVRDELLQV IRENQVIVVV GETGSGKTTQ LTQYLHEDGY
0601: TINGIVGCTQ PRRVAAMSVA KRVSEEMETE LGDKIGYAIR FEDVTGPNTV IKYMTDGVLL RETLKDSDLD KYRVVVMDEA HERSLNTDVL FGILKKVVAR
0701: RRDFKLIVTS ATLNAQKFSN FFGSVPIFNI PGRTFPVNIL YSKTPCEDYV EAAVKQAMTI HITSPPGDIL IFMTGQDEIE AACFSLKERM EQLVSSSSRE
0801: ITNLLILPIY SQLPADLQAK IFQKPEDGAR KCIVATNIAE TSLTVDGIYY VIDTGYGKMK VFNPRMGMDA LQVFPISRAA SDQRAGRAGR TGPGTCYRLY
0901: TESAYLNEML PSPVPEIQRT NLGNVVLLLK SLKIDNLLDF DFMDPPPQEN ILNSMYQLWV LGALNNVGGL TDLGWKMVEF PLDPPLAKML LMGERLDCID
1001: EVLTIVSMLS VPSVFFRPKE RAEESDAARE KFFVPESDHL TLLNVYQQWK EHDYRGDWCN DHYLQVKGLR KAREVRSQLL DILKQLKIEL RSCGPDWDIV
1101: RKAICSAYFH NSARLKGVGE YVNCRTGMPC HLHPSSALYG LGYTPDYVVY HELILTTKEY MQCATSVEPH WLAELGPMFF SVKDSDTSML EHKKKQKEEK
1201: SGMEEEMEKL RRDQVESELR SKERERKKRA KQQQQISGPG LKKGTTFLRP KKLGL
Arabidopsis Description
CUVPre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 [Source:UniProtKB/Swiss-Prot;Acc:F4K2E9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.