CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra024903.1-P	Field mustard	nucleus	99.03	99.03
CDY57512	Canola	nucleus	97.09	97.09
AT2G01130.1	Thale cress	nucleus	83.35	85.0
VIT_01s0011g04360.t01	Wine grape	plastid	74.63	71.72
KRH38164	Soybean	nucleus	68.02	70.05
Solyc04g007510.2.1	Tomato	plastid	70.75	69.58
CDY40601	Canola	nucleus, plastid	64.05	61.56
CDX93688	Canola	plastid	63.79	61.36
CDX98799	Canola	mitochondrion	56.39	55.46
CDX70187	Canola	mitochondrion	56.39	55.36
CDX79642	Canola	nucleus, vacuole	38.85	42.61
CDX84588	Canola	plastid, vacuole	38.77	42.51
CDY68405	Canola	nucleus	19.91	33.73
CDX95715	Canola	cytosol	20.79	32.55
CDX83337	Canola	cytosol	20.62	32.37
CDX76626	Canola	nucleus	20.44	32.31
CDY11413	Canola	nucleus	20.35	32.17
CDX74061	Canola	cytosol	8.99	31.78
CDY36075	Canola	nucleus	18.15	30.56
CDX90112	Canola	nucleus	18.94	30.5
CDY11762	Canola	nucleus	18.85	30.4
CDX78859	Canola	nucleus	18.68	30.37
CDY34567	Canola	nucleus	17.71	30.32
CDX74059	Canola	nucleus	7.05	30.3
CDX99466	Canola	nucleus	18.68	30.29
CDY37024	Canola	cytosol, mitochondrion	8.46	29.63
CDY10756	Canola	nucleus	28.02	29.2
CDY23338	Canola	cytosol	10.84	29.15
CDX85017	Canola	cytosol, plastid	18.15	28.53
CDY16154	Canola	nucleus, plastid	18.06	28.35
CDY32702	Canola	nucleus	16.74	27.46
CDY02818	Canola	nucleus	16.04	27.41
CDY60185	Canola	nucleus	20.44	27.01
CDY40514	Canola	nucleus	20.18	26.6
CDX97797	Canola	nucleus	28.99	25.48
CDY29644	Canola	nucleus	29.25	25.4
CDY10215	Canola	nucleus	28.19	24.92
CDY26898	Canola	nucleus	22.29	24.23
CDY32278	Canola	endoplasmic reticulum	22.29	24.23
CDY39917	Canola	nucleus	30.13	24.2
CDY29164	Canola	nucleus	29.87	23.81
CDX83624	Canola	nucleus	21.59	21.97
CDY13640	Canola	nucleus	21.67	21.87
CDY63687	Canola	nucleus, plastid	20.26	20.72
CDX91151	Canola	nucleus	22.29	20.26
CDX85676	Canola	nucleus	22.2	20.19
CDY23802	Canola	nucleus	8.72	18.86
CDY48353	Canola	nucleus	19.38	17.99
CDY34159	Canola	nucleus	19.3	17.7
CDX78376	Canola	plastid	22.73	14.68
CDX81170	Canola	plastid	22.64	14.58
CDX69841	Canola	plastid	22.2	14.26
CDX96996	Canola	nucleus	22.2	14.25
CDY51663	Canola	nucleus	0.53	9.52
CDX91491	Canola	nucleus	0.53	9.52

Protein Annotations

Gene3D:1.20.120.1080	Gene3D:3.30.160.20	Gene3D:3.40.50.300	MapMan:35.1	GO:A0A078FX25	UniProt:A0A078FX25
EnsemblPlants:CDY17694	ProteinID:CDY17694	ProteinID:CDY17694.1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DUF1605
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004386
GO:GO:0005488	GO:GO:0005524	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00001915001	InterPro:Helicase-assoc_dom	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014720	InterPro:P-loop_NTPase	PFAM:PF00035
PFAM:PF00270	PFAM:PF00271	PFAM:PF04408	PFAM:PF07717	PFscan:PS50137	PFscan:PS51192
PFscan:PS51194	PANTHER:PTHR18934	PANTHER:PTHR18934:SF146	SMART:SM00358	SMART:SM00487	SMART:SM00490
SMART:SM00847	SUPFAM:SSF52540	SUPFAM:SSF54768	UniParc:UPI0004EDE408	InterPro:dsRBD_dom	SEG:seg

Description

BnaA06g35130DBnaA06g35130D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FX25]

Coordinates

chrLK032076:+:627894..634045

Molecular Weight (calculated)

127357.0 Da

IEP (calculated)

8.393

GRAVY (calculated)

-0.266

Length

1135 amino acids

Sequence
(BLAST)

0001: MKDRLPPPSL YVPPHQRLRS TPPDYAFHPL PLAHTQSQKP PLLPTRFVSA YDDSVSEVAS LPEPVAFHCA NLDEWRRNLS MLLRDPVKQE VISREKKDRR
0101: DFDKLAALAT SLGLYSQAYA KVVVFSKIPL PNYRFDLDDK RPLREVSVHT DLVKRVDAYL KEHLSKKSKR TNGIPANSFS RTSSTSSMAT DEGLLEQPEL
0201: PAASKTALDK ILWQRSLQLR ERQDYWEKSV EGQRMLECRR CLPAYKQRDV VLSAISQNQV IVVSGETGCG KTTQIPQFIL ESEIEANRGA LCSIICTQPR
0301: KISAMSVSER VACERGEPLG ESVGYKVRLE GVRGRDTRLL FCTTGILLRR LLVDRSLRGV THVIVDEIHE RGMNEDFLLI ILKDLLPRRP ELKLILMSAT
0401: LDAELFSSYF GGAGVFHIPG FTYPVGSYFL EDILEMSRYR LTPYNQIDDY GQERLWKMNK QIPRKRKSQI ASVVEDALRA ADFKEFSPET RDSLSCWNPD
0501: CIGFNLIESL LCHICENERP GGILVFMTGW DDISSLKDKL QIHPIFSDPN RVMLLACHGS MASFEQRLIF EEPASGVRKI VLATNIAETS ITINDVAFVI
0601: DCGKAKETSY DALNNTPCLL PSWISKVSAQ QRRGRAGRVQ PGQCYHLYPK CLYDAFAEYQ LPEILRTPLQ SLCLQIKSLN FGTISEFLSR ALQSPELLAV
0701: QKAIEYLKTI GALDENEQLT ALGRYLAKLP MEPKLGKMLI LGAILGCLDT ILTVAAGLSV RDPFLTPLDK KDLAEAAKSQ FSRDHSDHLA LVRAYEGYKR
0801: AEEEAGVYDY CWKNFLSIQS MRAVDSLRKE FFSLLKDTGL IDGTPATCKS GGNDENLTRA VICYGLYPGI CSVVHNERAF SLKTMEDGQV LLYSNSVNAR
0901: ETKIPYPWLV FNEKIKVNSI FVRDSTAVSD SVLILFGGSV SKGDFDGHLK MLGGYLDFFM KPAVAEMYQT LKKELDELIQ SKLLNPKMDI QAHRDLLLAV
1001: RLLVSEDRCD GSFVFGRQAL KPLGTSAVST QPTLVSRTES GPGGDNSKSQ LQTMLTRAGH AAPMYKTKQL KNSKFQSTVE FNGTQIMGQP CSNKKTAEKD
1101: AAAEAIRWLM GGAKESHEHV NHMSNLLKRS KKVHL

Best Arabidopsis Sequence Match ( AT2G01130.1 )
(BLAST)

0001: MTNRLPPSLY VPPHQRLGSD YGFNPVPLSP VRYVSAYDDR VSEDRQPQEG TFHCADLDDW NKRFSMLLKD SLKQEVISRE KKDRRDFDKL AALATTLGLY
0101: SHAYAKVVVF SKIPLPNYRF DLDDKKPQRE VNLHTDLLQR VEAYLTEYLS KSSNRIDRVP ANSVSRTSSI SSTDEWFSEQ PLPISATKIL WQRSLQLRDR
0201: QQYWQASVEG QRMLDSRTSL PAFKQRHSVL TAISQNQVIV ISGETGCGKT TQIPQFILES EIEANRGAFS SIICTQPRRI SAMSVSERVA YERGEQLGES
0301: VGYKVRLEGV KGRDTRLLFC TTGILLRRLL VDRNLRGVTH VIVDEIHERG MNEDFLLIIL KDLLSRRSEL KLILMSATLD AELFSSYFGG AGVIYIPGFT
0401: YPVRSHFLED ILEMTRYRLT PYNQIDDYGQ ERTWKMNKQI PKKRKSQITF VVEDALRAAD FKEFSPETRE SLSCWYPDCI GFNLIEFLLC NICENEGPGG
0501: ILIFLTGWDD ISSLKEKLQI HPIFGNPDLV MLLACHGSME TFEQRLIFEE PASGVRKIVL ATNIAETSIT INDVAFVIDC GKAKETSYDA LNNTPCLLPS
0601: WISKVSAQQR RGRAGRVRPG QCYHLYPKCV YDAFAEYQLP EILRTPLHSL CLQIKSLNLG SISEFLSRAL QSPELLAVQK AIAFLKIIGA LDENEDLTTL
0701: GRYLSKLPME PKLGKMLILG AILGCLDPIL TVAAGLSVRD PFLTPQDKKD LAEAAKSQFS RDHSDHLALV RAYEGWKKAE EESAVYDYCW KNFLSIQSLR
0801: AIDSLRKEFF SLLKDTGLID GNPSICNSEG NDANLTRAVI CYGMYPGICS VVHNERSFSL KTMEDGQVLL YSNSENARET KIPYPWLVFN EKIKVNSVFL
0901: RDSTACSDST LILFGGSISK GDTDGHLKML GGYLEFFMKP DVAEIYQTLK KELDELIQNK LLNPKVDMQA HRELLSAIRL LVSEDGCDGR FVFGHQILRP
1001: LEISALSTKP SLFSRTESGP GGDNSKSQLQ TILTRAGYTV PMYKTKQLKN NKFQTTVEFN ETQIMGQPCS NKKSAEKDAA AEAIQWLKGG AKESHEQVNH
1101: MSKLLKKGKK DHL

Arabidopsis Description

DExH-box ATP-dependent RNA helicase DExH5, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:F4IM84]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.