Factsheet for VIT_01s0011g04360.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG90929	Soybean	plastid	75.44	78.23
Solyc04g007510.2.1	Tomato	plastid	76.38	78.16
VIT_17s0000g03030.t01	Wine grape	nucleus	69.09	77.2
CDY17694	Canola	nucleus	71.72	74.63
Bra024903.1-P	Field mustard	nucleus	71.63	74.54
CDY57512	Canola	nucleus	71.63	74.54
AT2G01130.1	Thale cress	nucleus	69.77	74.03
VIT_08s0032g01230.t01	Wine grape	nucleus, plastid	38.78	44.68
VIT_07s0005g01770.t01	Wine grape	nucleus	20.49	33.24
VIT_01s0010g02780.t01	Wine grape	nucleus	16.43	30.31
VIT_10s0003g00810.t01	Wine grape	nucleus	17.78	30.26
VIT_01s0137g00640.t01	Wine grape	nucleus	18.37	29.89
VIT_01s0010g02920.t01	Wine grape	nucleus	19.81	26.74
VIT_12s0028g01050.t01	Wine grape	nucleus	27.86	26.73
VIT_12s0035g00800.t01	Wine grape	nucleus	27.94	24.11
VIT_17s0000g06950.t01	Wine grape	nucleus	21.17	23.72
VIT_08s0056g00470.t01	Wine grape	nucleus	21.93	22.04
VIT_07s0005g00860.t01	Wine grape	nucleus	19.05	17.03
VIT_07s0191g00210.t01	Wine grape	nucleus	18.37	12.49

Protein Annotations

Gene3D:1.20.120.1080	EntrezGene:100264518	wikigene:100264518	Gene3D:3.30.160.20	Gene3D:3.40.50.300	MapMan:35.1
ProteinID:CBI26949	ProteinID:CBI26949.3	UniProt:D7T8X8	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DUF1605	EMBL:FN595752
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004004
GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	InterPro:Helicase-assoc_dom	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014720	EntrezGene:LOC100264518	wikigene:LOC100264518	InterPro:P-loop_NTPase
PFAM:PF00035	PFAM:PF00270	PFAM:PF00271	PFAM:PF04408	PFAM:PF07717	PFscan:PS50137
PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR18934	PANTHER:PTHR18934:SF146	SMART:SM00358	SMART:SM00487
SMART:SM00490	SMART:SM00847	SUPFAM:SSF52540	SUPFAM:SSF54768	TIGR:TC62211	UniParc:UPI0001BE29DE
ArrayExpress:VIT_01s0011g04360	EnsemblPlantsGene:VIT_01s0011g04360	EnsemblPlants:VIT_01s0011g04360.t01	RefSeq:XP_002280133	RefSeq:XP_002280133.1	InterPro:dsRBD_dom
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1:+:3945280..3976686

Molecular Weight (calculated)

133101.0 Da

IEP (calculated)

7.058

GRAVY (calculated)

-0.298

Length

1181 amino acids

Sequence
(BLAST)

0001: MKDRPPPSCV SRYIPPHHRL RSAVTSSASP NLNAASLDST SRDHQGTLLN PRNTSLPHSQ PQKLQQKDNS LYDFLYEEVS EEGSDREIES SSHGVSLIHL
0101: LVCEFGGASA PDTIDEWKWK FTMLLRNKDK QELVSREKKD RRDFEQIAIL ASRMGLYSHL YVKVVVFSKV PLPNYRFDLD DRRPQREVIL PLGLDRRVEA
0201: HLEEYLSQKF TTNENFQDIA FSRSSSTSSI ATDEGLFEQP EPLAVSRSVI EKIVWRRSLQ LRNQQQAWQE STEGRKMLEF RGSLPASKEK DALLTAISGN
0301: QVVIVSGETG CGKTTQIPQF ILESEIESVR GAVCSIICTQ PRRISAMSVS ERVAAERGEK LGESVGYKVR LEGMKGKDTC LLFCTTGILL RRLLVDRNLK
0401: GVTHVIVDEI HERGMNEDFL LIVLKDLLPR RPELRLILMS ATLDAELFSS YFDGAPVVHI PGFTYPIRTY FLENILEMTG YRLTPYNQVD DYGQEKMWKM
0501: NKQAPRKRKS QLAPVVEDAL RATDFKDYSP QTQESLSCWN PDCIGFNLIE NLLCHICENE CPGAVLVFMT GWDDISSLKD KLQAHPILGD SDQVLLLTCH
0601: GSMASAEQRL IFDEPRDGVR KIVLATNIAE TSITINDVVF VVDCGKAKET SYDALNNTPC LLPSWISKVS AQQRRGRAGR VQPGKCYHLY PRCVYDAFAD
0701: YQLPEILRTP LQSLCLQIKS LKLGSISEFL SRALQSPELL AVQNAIEYLK IIGALDENEN LTVLGRHLTM LPMEPKLGKM LILGAVFNCL DPILTIVAGL
0801: SVRDPFLTPL DKKDLAEAAK AQFSHDYSDH LALVRAYEGW KDAEKDQIGY EYCWKNFLSA QSMKAIDSLR KEFFSLLKDT DLVDGNMATY NAWSYDEHLI
0901: RAVICCGLYP GICSVVQNEK SFSLKTMEDG QVLLHSNSVN ARECKIPYPW LVFNEKIKVN SVFLRDSTAV SDSVLLLFGG DILRGDGDGH LKMLGGYLEF
1001: FMKPAIAEMY QSLRRELDEL IQNKLLNPRM GIHMYHELLS AVRLLISEDQ CDGRFVFSHQ VGRQVVKPSK TSVTVMPKAL VSRTESGPGG DNSKSQLQTL
1101: LTRAGYAAPT YKTKQLKNNQ FRSTVEFNGM QIMGQPCNNK KFAEKDAAAE ALQLLMGGTQ SGHEYIDHMS MLLKKSKKDH K

Best Arabidopsis Sequence Match ( AT2G01130.1 )
(BLAST)

0001: MTNRLPPSLY VPPHQRLGSD YGFNPVPLSP VRYVSAYDDR VSEDRQPQEG TFHCADLDDW NKRFSMLLKD SLKQEVISRE KKDRRDFDKL AALATTLGLY
0101: SHAYAKVVVF SKIPLPNYRF DLDDKKPQRE VNLHTDLLQR VEAYLTEYLS KSSNRIDRVP ANSVSRTSSI SSTDEWFSEQ PLPISATKIL WQRSLQLRDR
0201: QQYWQASVEG QRMLDSRTSL PAFKQRHSVL TAISQNQVIV ISGETGCGKT TQIPQFILES EIEANRGAFS SIICTQPRRI SAMSVSERVA YERGEQLGES
0301: VGYKVRLEGV KGRDTRLLFC TTGILLRRLL VDRNLRGVTH VIVDEIHERG MNEDFLLIIL KDLLSRRSEL KLILMSATLD AELFSSYFGG AGVIYIPGFT
0401: YPVRSHFLED ILEMTRYRLT PYNQIDDYGQ ERTWKMNKQI PKKRKSQITF VVEDALRAAD FKEFSPETRE SLSCWYPDCI GFNLIEFLLC NICENEGPGG
0501: ILIFLTGWDD ISSLKEKLQI HPIFGNPDLV MLLACHGSME TFEQRLIFEE PASGVRKIVL ATNIAETSIT INDVAFVIDC GKAKETSYDA LNNTPCLLPS
0601: WISKVSAQQR RGRAGRVRPG QCYHLYPKCV YDAFAEYQLP EILRTPLHSL CLQIKSLNLG SISEFLSRAL QSPELLAVQK AIAFLKIIGA LDENEDLTTL
0701: GRYLSKLPME PKLGKMLILG AILGCLDPIL TVAAGLSVRD PFLTPQDKKD LAEAAKSQFS RDHSDHLALV RAYEGWKKAE EESAVYDYCW KNFLSIQSLR
0801: AIDSLRKEFF SLLKDTGLID GNPSICNSEG NDANLTRAVI CYGMYPGICS VVHNERSFSL KTMEDGQVLL YSNSENARET KIPYPWLVFN EKIKVNSVFL
0901: RDSTACSDST LILFGGSISK GDTDGHLKML GGYLEFFMKP DVAEIYQTLK KELDELIQNK LLNPKVDMQA HRELLSAIRL LVSEDGCDGR FVFGHQILRP
1001: LEISALSTKP SLFSRTESGP GGDNSKSQLQ TILTRAGYTV PMYKTKQLKN NKFQTTVEFN ETQIMGQPCS NKKSAEKDAA AEAIQWLKGG AKESHEQVNH
1101: MSKLLKKGKK DHL

Arabidopsis Description

DExH-box ATP-dependent RNA helicase DExH5, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:F4IM84]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.