Factsheet for VIT_07s0005g01770.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH69191	Soybean	nucleus	92.58	93.35
KRH68290	Soybean	nucleus	92.31	93.33
KRG96553	Soybean	nucleus	91.9	92.79
Solyc01g079250.2.1	Tomato	nucleus	89.42	90.04
PGSC0003DMT400023284	Potato	nucleus	89.42	90.04
TraesCS4A01G124200.2	Wheat	cytosol	87.64	88.73
KXG39505	Sorghum	cytosol	87.77	88.5
TraesCS4D01G181700.1	Wheat	cytosol	87.5	88.35
TraesCS4B01G180200.1	Wheat	cytosol	87.5	88.35
CDX76626	Canola	nucleus	87.09	88.3
HORVU4Hr1G052730.3	Barley	cytosol	87.36	88.21
CDX83337	Canola	cytosol	87.5	88.11
Bra000445.1-P	Field mustard	cytosol	87.5	88.11
Zm00001d028923_P002	Maize	nucleus	87.23	88.07
CDX95715	Canola	cytosol	87.64	88.0
CDY11413	Canola	nucleus	86.68	87.88
Bra007671.1-P	Field mustard	nucleus	86.68	87.88
KRH31768	Soybean	cytosol, nucleus	68.41	86.31
Os03t0314100-01	Rice	cytosol, nucleus, plastid	65.11	84.04
GSMUA_Achr1P18470_001	Banana	cytosol	39.97	81.74
Zm00001d047601_P006	Maize	nucleus	86.68	81.63
Bra003744.1-P	Field mustard	nucleus	74.18	80.6
CDY68405	Canola	nucleus	73.63	80.0
AT5G14900.1	Thale cress	cytosol	30.91	74.75
CDX74061	Canola	cytosol	28.3	64.17
Bra001237.1-P	Field mustard	cytosol	37.36	62.96
CDX74059	Canola	nucleus	22.53	62.12
Bra001238.1-P	Field mustard	cytosol, mitochondrion	21.7	59.85
VIT_10s0003g00810.t01	Wine grape	nucleus	42.58	44.67
VIT_01s0137g00640.t01	Wine grape	nucleus	40.66	40.77
VIT_01s0010g02780.t01	Wine grape	nucleus	33.52	38.12
VIT_01s0010g02920.t01	Wine grape	nucleus	40.11	33.37
VIT_17s0000g06950.t01	Wine grape	nucleus	48.21	33.3
VIT_08s0056g00470.t01	Wine grape	nucleus	49.59	30.72
VIT_08s0032g01230.t01	Wine grape	nucleus, plastid	32.97	23.41
VIT_17s0000g03030.t01	Wine grape	nucleus	33.1	22.8
VIT_01s0011g04360.t01	Wine grape	plastid	33.24	20.49
VIT_07s0005g00860.t01	Wine grape	nucleus	33.24	18.32
VIT_12s0028g01050.t01	Wine grape	nucleus	29.26	17.3
VIT_12s0035g00800.t01	Wine grape	nucleus	28.71	15.27
VIT_07s0191g00210.t01	Wine grape	nucleus	29.67	12.44

Protein Annotations

Gene3D:1.20.120.1080	EntrezGene:100253689	wikigene:100253689	MapMan:16.4.7.3.3	Gene3D:3.40.50.300	UniProt:A5ADC4
EMBL:AM423680	ProteinID:CAN64445	ProteinID:CAN64445.1	ProteinID:CCB60032	ProteinID:CCB60032.1	ncoils:Coil
InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DUF1605	EMBL:FN596502	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006396
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	InterPro:Helicase-assoc_dom	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	EntrezGene:LOC100253689	wikigene:LOC100253689	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	PFAM:PF04408	PFAM:PF07717	PFscan:PS51192	PFscan:PS51194
PANTHER:PTHR18934	PANTHER:PTHR18934:SF193	SMART:SM00487	SMART:SM00490	SMART:SM00847	SUPFAM:SSF52540
TIGR:TC53771	UniParc:UPI000151E7C0	ArrayExpress:VIT_07s0005g01770	EnsemblPlantsGene:VIT_07s0005g01770	EnsemblPlants:VIT_07s0005g01770.t01	unigene:Vvi.14370
RefSeq:XP_002278247	RefSeq:XP_002278247.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr7:+:4252958..4259390

Molecular Weight (calculated)

82702.5 Da

IEP (calculated)

7.543

GRAVY (calculated)

-0.382

Length

728 amino acids

Sequence
(BLAST)

001: MGTERKRKVS LFDVVDETSV SAKISKSNGS GAINNNNNNN LVNRWNGRPY SQRYYEILEK RRTLPVWHQK EEFLQVLKAN QSLILVGETG SGKTTQIPQF
101: VLEAVDIETP DKRKKMMIAC TQPRRVAAMS VSRRVAEEMD VTIGEEVGYS IRFEDCSSAR TVLKYLTDGM LLREAMTDPL LERYKVIILD EAHERTLATD
201: VLFGLLKEVL KNRPDLKVVV MSATLEAEKF QGYFNGAPLM KVPGRLHPVE IFYTQEPERD YLEAAIRTVV QIHMCEGAGD ILVFLTGEEE IEDACKKISK
301: EIANLGDQVG PVKAVPLYST LPPAMQQKIF EPAPPPLTEG GPPGRKIVVS TNIAETSLTI DGIVFVIDPG FAKQKVYNPR VRVESLLVSP ISKASAHQRS
401: GRAGRTQPGK CFRLYTEKSF NNDLQPQTYP EILRSNLANT VLTLKKLGID DLVHFDFMDP PAPETLMRAL EVLNYLGALD DDGNLTKLGE IMSEFPLDPQ
501: MSKMLVVSPE FNCSNEILSI SAMLSVPNCF VRPREAQKAA DEAKARFGHI DGDHLTLLNV YHAYKQNNED PSWCYENFVN QRALKAADNV RQQLVRIMAR
601: FNLKLCSTDF NSRDYYINIR KAMLAGYFMQ VAHLERTGHY LTVKDNQVVH LHPSNCLDHK PEWVIYNEYV LTSRNFIRTV TDVRGEWLVD VAPHYYDLAN
701: FPNCEAKRVL EKLYKKREKD REESRNRK

Best Arabidopsis Sequence Match ( AT3G62310.1 )
(BLAST)

001: MGTERKRKIS LFDVMDDPSA PAKNAKTSGL PDGGINSLIN KWNGKPYSQR YYDILEKRRT LPVWLQKEEF LKTLNNNQTL ILVGETGSGK TTQIPQFVID
101: AVDAETSDKR RKWLVGCTQP RRVAAMSVSR RVAEEMDVTI GEEVGYSIRF EDCSSPRTVL KYLTDGMLLR EAMADPLLER YKVIILDEAH ERTLATDVLF
201: GLLKEVLKNR PDLKLVVMSA TLEAEKFQDY FSGAPLMKVP GRLHPVEIFY TQEPERDYLE AAIRTVVQIH MCEPPGDILV FLTGEEEIED ACRKINKEVG
301: NLGDQVGPIK VVPLYSTLPP AMQQKIFDPA PEPVTEGGPP GRKIVVSTNI AETSLTIDGI VYVIDPGFAK QKVYNPRIRV ESLLVSPISK ASAHQRSGRA
401: GRTRPGKCFR LYTEKSFNND LQPQTYPEIL RSNLANTVLT LKKLGIDDLV HFDFMDPPAP ETLMRALEVL NYLGALDDDG NLTKTGEIMS EFPLDPQMAK
501: MLIVSPEFNC SNEILSVSAM LSVPNCFIRP REAQKAADEA KARFGHIEGD HLTLLNVYHA FKQNNEDPNW CYENFINNRA MKSADNVRQQ LVRIMSRFNL
601: KMCSTDFNSR DYYINIRKAM LAGYFMQVAH LERTGHYLTV KDNQVVHLHP SNCLDHKPEW VIYNEYVLTS RNFIRTVTDI RGEWLVDVAS HYYDLSNFPN
701: CEAKRVIEKL YKKREREKEE SKKNRK

Arabidopsis Description

Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZQ9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.