Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX83337 | Canola | cytosol | 98.48 | 98.76 |
| AT2G47250.1 | Thale cress | nucleus | 95.03 | 94.51 |
| CDX76626 | Canola | nucleus | 91.45 | 92.34 |
| CDY11413 | Canola | nucleus | 90.76 | 91.64 |
| KRH69191 | Soybean | nucleus | 88.97 | 89.34 |
| KRH68290 | Soybean | nucleus | 88.14 | 88.75 |
| KRG96553 | Soybean | nucleus | 88.14 | 88.63 |
| PGSC0003DMT400023284 | Potato | nucleus | 87.59 | 87.83 |
| TraesCS4A01G124200.2 | Wheat | cytosol | 87.03 | 87.76 |
| Solyc01g079250.2.1 | Tomato | nucleus | 87.45 | 87.69 |
| VIT_07s0005g01770.t01 | Wine grape | nucleus | 88.0 | 87.64 |
| TraesCS4B01G180200.1 | Wheat | cytosol | 86.9 | 87.38 |
| TraesCS4D01G181700.1 | Wheat | cytosol | 86.9 | 87.38 |
| HORVU4Hr1G052730.3 | Barley | cytosol | 86.9 | 87.38 |
| Zm00001d028923_P002 | Maize | nucleus | 85.79 | 86.27 |
| KXG39505 | Sorghum | cytosol | 85.66 | 86.01 |
| KRH31768 | Soybean | cytosol, nucleus | 66.34 | 83.36 |
| CDY68405 | Canola | nucleus | 75.72 | 81.94 |
| Os03t0314100-01 | Rice | cytosol, nucleus, plastid | 63.17 | 81.21 |
| Zm00001d047601_P006 | Maize | nucleus | 84.55 | 79.3 |
| GSMUA_Achr1P18470_001 | Banana | cytosol | 38.21 | 77.81 |
| CDX74061 | Canola | cytosol | 28.83 | 65.11 |
| CDX74059 | Canola | nucleus | 23.17 | 63.64 |
| CDY23338 | Canola | cytosol | 26.34 | 45.26 |
| CDY37024 | Canola | cytosol, mitochondrion | 20.0 | 44.75 |
| CDX99466 | Canola | nucleus | 41.24 | 42.71 |
| CDX78859 | Canola | nucleus | 40.97 | 42.55 |
| CDY34567 | Canola | nucleus | 37.93 | 41.48 |
| CDX85017 | Canola | cytosol, plastid | 40.97 | 41.14 |
| CDY36075 | Canola | nucleus | 38.07 | 40.95 |
| CDY16154 | Canola | nucleus, plastid | 40.83 | 40.94 |
| CDY11762 | Canola | nucleus | 37.79 | 38.92 |
| CDX90112 | Canola | nucleus | 37.79 | 38.87 |
| CDY32702 | Canola | nucleus | 36.97 | 38.73 |
| CDY60185 | Canola | nucleus | 45.52 | 38.42 |
| CDY02818 | Canola | nucleus | 35.03 | 38.25 |
| CDY40514 | Canola | nucleus | 44.97 | 37.86 |
| CDY26898 | Canola | nucleus | 46.62 | 32.38 |
| CDY32278 | Canola | endoplasmic reticulum | 46.62 | 32.38 |
| CDX83624 | Canola | nucleus | 49.38 | 32.11 |
| CDY13640 | Canola | nucleus | 49.52 | 31.91 |
| CDX91491 | Canola | nucleus | 2.76 | 31.75 |
| CDY51663 | Canola | nucleus | 2.76 | 31.75 |
| CDY23802 | Canola | nucleus | 20.69 | 28.57 |
| CDX85676 | Canola | nucleus | 41.38 | 24.04 |
| CDX91151 | Canola | nucleus | 41.38 | 24.02 |
| CDX79642 | Canola | nucleus, vacuole | 32.28 | 22.61 |
| CDX84588 | Canola | plastid, vacuole | 32.14 | 22.51 |
| CDY17694 | Canola | nucleus | 32.55 | 20.79 |
| CDY57512 | Canola | nucleus | 32.28 | 20.62 |
| CDY40601 | Canola | nucleus, plastid | 33.24 | 20.41 |
| CDX93688 | Canola | plastid | 33.1 | 20.34 |
| CDX70187 | Canola | mitochondrion | 31.86 | 19.98 |
| CDX98799 | Canola | mitochondrion | 31.72 | 19.93 |
| CDY10756 | Canola | nucleus | 29.24 | 19.47 |
| CDY48353 | Canola | nucleus | 31.72 | 18.81 |
| CDY34159 | Canola | nucleus | 31.86 | 18.67 |
| CDX97797 | Canola | nucleus | 29.24 | 16.42 |
| CDY29644 | Canola | nucleus | 28.97 | 16.07 |
| CDY10215 | Canola | nucleus | 28.28 | 15.97 |
| CDY39917 | Canola | nucleus | 28.28 | 14.51 |
| CDY29164 | Canola | nucleus | 28.28 | 14.4 |
| CDY63687 | Canola | nucleus, plastid | 21.66 | 14.14 |
| CDX69841 | Canola | plastid | 30.48 | 12.51 |
| CDX81170 | Canola | plastid | 30.21 | 12.42 |
| CDX78376 | Canola | plastid | 30.07 | 12.41 |
| CDX96996 | Canola | nucleus | 30.21 | 12.38 |
Protein Annotations
| Gene3D:1.20.120.1080 | MapMan:16.4.7.3.3 | Gene3D:3.40.50.300 | GO:A0A078E1T2 | InterPro:AAA+_ATPase | EnsemblPlants:CDX95715 |
| ProteinID:CDX95715 | ProteinID:CDX95715.1 | ncoils:Coil | InterPro:DUF1605 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004386 | GO:GO:0016787 | EnsemblPlantsGene:GSBRNA2T00101613001 | InterPro:Helicase-assoc_dom | InterPro:Helicase_ATP-bd | InterPro:Helicase_C |
| InterPro:IPR001650 | InterPro:IPR014001 | InterPro:P-loop_NTPase | PFAM:PF00271 | PFAM:PF04408 | PFAM:PF07717 |
| PFAM:PF13401 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR18934 | PANTHER:PTHR18934:SF193 | SMART:SM00487 |
| SMART:SM00490 | SMART:SM00847 | SUPFAM:SSF52540 | UniParc:UPI0004EE6BD6 | SEG:seg | : |
Description
BnaC03g25960D
Coordinates
chrLK031890:-:895817..898879
Molecular Weight (calculated)
82530.2 Da
IEP (calculated)
7.360
GRAVY (calculated)
-0.418
Length
725 amino acids
Sequence
(BLAST)
(BLAST)
001: MGTERKRKVS LFDVMEDPSA KNNKSNVLGG AAAGISNLIN KWNGKPYSQR YYDILEKRRD LPVWLQKDEF LRTLQSNQTL ILVGETGSGK TTQIPQFVLD
101: AVEAENTNKH KKWLVGCTQP RRVAAMSVSR RVADEMDVAI GEEVGYSIRF EDCSGPRTML KYLTDGMLLR EAMADPLLER YKVIILDEAH ERTLATDVLF
201: GLLKEVLRNR PDLKLVVMSA TLEAEKFQEY FSGAPLMKVP GRLHPVEIFY TQDPERDYLE AAIRTVVQIH MCEPPGDVLV FLTGEEEIED ACRKINKEVS
301: NLGDQVGPVK VVPLYSTLPP AMQQKIFDPA PEPLTEGGPA GRKIVVSTNI AETSLTIDGI VYVIDPGFAK QKVYNPRIRV ESLLVSPISK ASAHQRSGRA
401: GRTRPGKCFR LYTEKSFNND LQPQTYPEIL RSNLANTVLT LKKLGIDDLV HFDFMDPPAP ETLMRALEVL NYLGALDDEG NLTRTGEIMS EFPLDPQMSK
501: MLIVSPEFNC SNEILSVSAM LSVPNCFVRP REAQKAADEA KSKFGHIDGD HLTLLNVYHA YKQNNEDPNW CFENFVNNRA MKSADNVRQQ LVRIMSRFNL
601: KMCSTDFNSR DYYVNIRKAM LSGYFMQVAH LERTGHYLTV KDNQVVHLHP SNCLDHKPEW VIYNEYVLTT RNFIRTVTDV RGDWLVDVAP HYYDLSNFPN
701: CEAKRVLEKL YKKRERERNE SKSRK
101: AVEAENTNKH KKWLVGCTQP RRVAAMSVSR RVADEMDVAI GEEVGYSIRF EDCSGPRTML KYLTDGMLLR EAMADPLLER YKVIILDEAH ERTLATDVLF
201: GLLKEVLRNR PDLKLVVMSA TLEAEKFQEY FSGAPLMKVP GRLHPVEIFY TQDPERDYLE AAIRTVVQIH MCEPPGDVLV FLTGEEEIED ACRKINKEVS
301: NLGDQVGPVK VVPLYSTLPP AMQQKIFDPA PEPLTEGGPA GRKIVVSTNI AETSLTIDGI VYVIDPGFAK QKVYNPRIRV ESLLVSPISK ASAHQRSGRA
401: GRTRPGKCFR LYTEKSFNND LQPQTYPEIL RSNLANTVLT LKKLGIDDLV HFDFMDPPAP ETLMRALEVL NYLGALDDEG NLTRTGEIMS EFPLDPQMSK
501: MLIVSPEFNC SNEILSVSAM LSVPNCFVRP REAQKAADEA KSKFGHIDGD HLTLLNVYHA YKQNNEDPNW CFENFVNNRA MKSADNVRQQ LVRIMSRFNL
601: KMCSTDFNSR DYYVNIRKAM LSGYFMQVAH LERTGHYLTV KDNQVVHLHP SNCLDHKPEW VIYNEYVLTT RNFIRTVTDV RGDWLVDVAP HYYDLSNFPN
701: CEAKRVLEKL YKKRERERNE SKSRK
001: MGTERKRKVS LFDVMEDPSL SSKNTKSNGL GLAAAAGGGS NLINKWNGKA YSQRYFEILE KRRDLPVWLQ KDDFLNTLNS NQTLILVGET GSGKTTQIPQ
101: FVLDAVVADN SDKGRKWLVG CTQPRRVAAM SVSRRVADEM DVSIGEEVGY SIRFEDCTSS RTMLKYLTDG MLLREAMADP LLERYKVIIL DEAHERTLAT
201: DVLFGLLKEV LRNRPDLKLV VMSATLEAEK FQEYFSGAPL MKVPGRLHPV EIFYTQEPER DYLEAAIRTV VQIHMCEPPG DILVFLTGEE EIEDACRKIN
301: KEVSNLGDQV GPVKVVPLYS TLPPAMQQKI FDPAPVPLTE GGPAGRKIVV STNIAETSLT IDGIVYVIDP GFAKQKVYNP RIRVESLLVS PISKASAHQR
401: SGRAGRTRPG KCFRLYTEKS FNNDLQPQTY PEILRSNLAN TVLTLKKLGI DDLVHFDFMD PPAPETLMRA LEVLNYLGAL DDEGNLTKTG EIMSEFPLDP
501: QMSKMLIVSP EFNCSNEILS VSAMLSVPNC FVRPREAQKA ADEAKARFGH IDGDHLTLLN VYHAYKQNNE DPNWCFENFV NNRAMKSADN VRQQLVRIMS
601: RFNLKMCSTD FNSRDYYVNI RKAMLAGYFM QVAHLERTGH YLTVKDNQVV HLHPSNCLDH KPEWVIYNEY VLTTRNFIRT VTDIRGEWLV DVAQHYYDLS
701: NFPNCEAKRA LEKLYKKRER EKNESKNRK
101: FVLDAVVADN SDKGRKWLVG CTQPRRVAAM SVSRRVADEM DVSIGEEVGY SIRFEDCTSS RTMLKYLTDG MLLREAMADP LLERYKVIIL DEAHERTLAT
201: DVLFGLLKEV LRNRPDLKLV VMSATLEAEK FQEYFSGAPL MKVPGRLHPV EIFYTQEPER DYLEAAIRTV VQIHMCEPPG DILVFLTGEE EIEDACRKIN
301: KEVSNLGDQV GPVKVVPLYS TLPPAMQQKI FDPAPVPLTE GGPAGRKIVV STNIAETSLT IDGIVYVIDP GFAKQKVYNP RIRVESLLVS PISKASAHQR
401: SGRAGRTRPG KCFRLYTEKS FNNDLQPQTY PEILRSNLAN TVLTLKKLGI DDLVHFDFMD PPAPETLMRA LEVLNYLGAL DDEGNLTKTG EIMSEFPLDP
501: QMSKMLIVSP EFNCSNEILS VSAMLSVPNC FVRPREAQKA ADEAKARFGH IDGDHLTLLN VYHAYKQNNE DPNWCFENFV NNRAMKSADN VRQQLVRIMS
601: RFNLKMCSTD FNSRDYYVNI RKAMLAGYFM QVAHLERTGH YLTVKDNQVV HLHPSNCLDH KPEWVIYNEY VLTTRNFIRT VTDIRGEWLV DVAQHYYDLS
701: NFPNCEAKRA LEKLYKKRER EKNESKNRK
Arabidopsis Description
Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH3 [Source:UniProtKB/Swiss-Prot;Acc:O22899]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.