Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX99466 | Canola | nucleus | 99.14 | 98.86 |
| Bra013313.1-P | Field mustard | nucleus | 97.85 | 97.99 |
| AT4G18465.1 | Thale cress | nucleus | 93.27 | 93.67 |
| PGSC0003DMT400046188 | Potato | nucleus | 76.5 | 77.39 |
| VIT_10s0003g00810.t01 | Wine grape | nucleus | 76.65 | 77.09 |
| Solyc09g097820.2.1 | Tomato | nucleus | 75.93 | 76.48 |
| KRH21325 | Soybean | nucleus | 72.21 | 75.68 |
| OQU86123 | Sorghum | nucleus | 75.64 | 75.43 |
| Os01t0212100-01 | Rice | nucleus | 75.07 | 74.86 |
| TraesCS3D01G148100.1 | Wheat | nucleus | 74.21 | 73.89 |
| TraesCS3B01G165500.1 | Wheat | nucleus | 73.93 | 73.61 |
| TraesCS3A01G131800.1 | Wheat | nucleus | 73.93 | 73.61 |
| GSMUA_Achr11P... | Banana | nucleus | 38.4 | 70.71 |
| HORVU3Hr1G028550.17 | Barley | cytosol | 69.91 | 70.01 |
| Zm00001d039380_P001 | Maize | nucleus | 64.47 | 47.52 |
| CDX74061 | Canola | cytosol | 20.92 | 45.48 |
| CDX74059 | Canola | nucleus | 16.48 | 43.56 |
| CDY68405 | Canola | nucleus | 41.69 | 43.43 |
| CDY37024 | Canola | cytosol, mitochondrion | 19.77 | 42.59 |
| CDX76626 | Canola | nucleus | 42.84 | 41.64 |
| CDY11413 | Canola | nucleus | 42.69 | 41.5 |
| CDX83337 | Canola | cytosol | 42.84 | 41.36 |
| CDX95715 | Canola | cytosol | 42.55 | 40.97 |
| CDY23338 | Canola | cytosol | 24.36 | 40.28 |
| CDY36075 | Canola | nucleus | 38.4 | 39.76 |
| CDY34567 | Canola | nucleus | 37.68 | 39.67 |
| CDX85017 | Canola | cytosol, plastid | 39.97 | 38.64 |
| CDY16154 | Canola | nucleus, plastid | 39.4 | 38.04 |
| CDY32702 | Canola | nucleus | 37.39 | 37.72 |
| CDY02818 | Canola | nucleus | 35.39 | 37.2 |
| CDY60185 | Canola | nucleus | 44.41 | 36.09 |
| CDY40514 | Canola | nucleus | 43.98 | 35.66 |
| CDY11762 | Canola | nucleus | 35.82 | 35.51 |
| CDX90112 | Canola | nucleus | 35.82 | 35.46 |
| CDY26898 | Canola | nucleus | 43.84 | 29.31 |
| CDY32278 | Canola | endoplasmic reticulum | 43.84 | 29.31 |
| CDY23802 | Canola | nucleus | 21.06 | 28.0 |
| CDX83624 | Canola | nucleus | 43.55 | 27.26 |
| CDY13640 | Canola | nucleus | 43.7 | 27.11 |
| CDY51663 | Canola | nucleus | 2.15 | 23.81 |
| CDX91491 | Canola | nucleus | 2.15 | 23.81 |
| CDX85676 | Canola | nucleus | 40.26 | 22.52 |
| CDX91151 | Canola | nucleus | 40.11 | 22.42 |
| CDX79642 | Canola | nucleus, vacuole | 30.95 | 20.87 |
| CDX84588 | Canola | plastid, vacuole | 30.95 | 20.87 |
| CDY17694 | Canola | nucleus | 30.37 | 18.68 |
| CDY57512 | Canola | nucleus | 29.94 | 18.41 |
| CDX93688 | Canola | plastid | 30.37 | 17.97 |
| CDY40601 | Canola | nucleus, plastid | 30.37 | 17.95 |
| CDY10756 | Canola | nucleus | 27.79 | 17.81 |
| CDX98799 | Canola | mitochondrion | 28.94 | 17.5 |
| CDX70187 | Canola | mitochondrion | 28.94 | 17.47 |
| CDY48353 | Canola | nucleus | 30.52 | 17.42 |
| CDY34159 | Canola | nucleus | 30.52 | 17.22 |
| CDX97797 | Canola | nucleus | 28.08 | 15.18 |
| CDY29644 | Canola | nucleus | 27.94 | 14.92 |
| CDY39917 | Canola | nucleus | 29.66 | 14.65 |
| CDY29164 | Canola | nucleus | 29.66 | 14.54 |
| CDY63687 | Canola | nucleus, plastid | 22.92 | 14.41 |
| CDY10215 | Canola | nucleus | 26.22 | 14.25 |
| CDX78376 | Canola | plastid | 31.23 | 12.41 |
| CDX81170 | Canola | plastid | 31.09 | 12.31 |
| CDX69841 | Canola | plastid | 31.09 | 12.28 |
| CDX96996 | Canola | nucleus | 31.09 | 12.27 |
Protein Annotations
| Gene3D:1.20.120.1080 | Gene3D:3.40.50.300 | MapMan:35.1 | GO:A0A078CS19 | EnsemblPlants:CDX78859 | ProteinID:CDX78859 |
| ProteinID:CDX78859.1 | InterPro:DNA/RNA_helicase_DEAH_CS | InterPro:DUF1605 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004386 |
| GO:GO:0016787 | EnsemblPlantsGene:GSBRNA2T00131335001 | InterPro:Helicase-assoc_dom | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 |
| InterPro:IPR014001 | InterPro:P-loop_NTPase | PFAM:PF00271 | PFAM:PF04408 | PFAM:PF07717 | ScanProsite:PS00690 |
| PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR18934 | PANTHER:PTHR18934:SF136 | SMART:SM00487 | SMART:SM00490 |
| SMART:SM00847 | SUPFAM:SSF52540 | UniParc:UPI0004EEF4CB | SEG:seg | : | : |
Description
BnaA01g09260D
Coordinates
chrLK031816:+:472636..477312
Molecular Weight (calculated)
78016.9 Da
IEP (calculated)
8.300
GRAVY (calculated)
-0.194
Length
698 amino acids
Sequence
(BLAST)
(BLAST)
001: MAFWKPGTEK PSFVEDEEGG IVLMSNNLSS SSSSSFGYAN IEKQRQRLPV YKYRTEILYL VENHATTIIV GETGSGKTTQ IPQYLKEAGW AEGGRVIACT
101: QPRRLAVQSV SARVADEIGV KLGDEVGYTI RFEDHTTSGV TSVKFLTDGV LIREMMEDPL LTKYSVIMVD EAHERSISTD ILLGLLKKIQ RRRPELRLII
201: SSATIEAKAM FNFFNTSKKR QAPEGSAQGP NLEPAILSVE GRGFSVKIHY VEEPVSDYIR SVVSTILLIN EREPPGDVLV FLTGQDDIET TIKLLAEEAH
301: SNQKNSSGLL PLPLYSGLSR TEQELIFTPT PRGKRKVILS TNIAETSLTL EARLLFVYVI DSGFSKQKFY NPISDIESLV VAPISKASAR QRSGRAGRVR
401: PGKCYRLYTE DYFLKEMPGE GIPEMQRSNL VSTVIQLKAL GIDNILGFDW PSPPSPQAMI RALEVLYSLQ ILDDDAKLTS PTGFQVAELP LDPMISKMIL
501: ASNELGCSDE IITIAAVLSI QSVWVIARGV QKEQDEAKLR FAAAEGDHVT FLNVYKGFLE SKKSSQWCYK NFLNYQSMKK VVEIRDQLKR IARRLGITLK
601: SCEGDIDAVR KAVTAGFFAN ACRLEPHSNG VFKTIRGSEE VYIHPSSVLF RVNPKWVVYQ SIVSTERQYM RNVVTINPSW LTEAAPHFYQ NRQNNISL
101: QPRRLAVQSV SARVADEIGV KLGDEVGYTI RFEDHTTSGV TSVKFLTDGV LIREMMEDPL LTKYSVIMVD EAHERSISTD ILLGLLKKIQ RRRPELRLII
201: SSATIEAKAM FNFFNTSKKR QAPEGSAQGP NLEPAILSVE GRGFSVKIHY VEEPVSDYIR SVVSTILLIN EREPPGDVLV FLTGQDDIET TIKLLAEEAH
301: SNQKNSSGLL PLPLYSGLSR TEQELIFTPT PRGKRKVILS TNIAETSLTL EARLLFVYVI DSGFSKQKFY NPISDIESLV VAPISKASAR QRSGRAGRVR
401: PGKCYRLYTE DYFLKEMPGE GIPEMQRSNL VSTVIQLKAL GIDNILGFDW PSPPSPQAMI RALEVLYSLQ ILDDDAKLTS PTGFQVAELP LDPMISKMIL
501: ASNELGCSDE IITIAAVLSI QSVWVIARGV QKEQDEAKLR FAAAEGDHVT FLNVYKGFLE SKKSSQWCYK NFLNYQSMKK VVEIRDQLKR IARRLGITLK
601: SCEGDIDAVR KAVTAGFFAN ACRLEPHSNG VFKTIRGSEE VYIHPSSVLF RVNPKWVVYQ SIVSTERQYM RNVVTINPSW LTEAAPHFYQ NRQNNISL
001: MAFWKPGTEK PRFEEDGEGG IVFMSNNLAS SSSSSYGYAN IEKQRQRLPV YKYRTEILYL VENHATTIIV GETGSGKTTQ IPQYLKEAGW AEGGRVIACT
101: QPRRLAVQAV SARVAEEMGV NLGEEVGYTI RFEDHTTSGV TSVKFLTDGV LIREMMEDPL LTKYSVIMID EAHERSISTD ILLGLLKKIQ RRRPELRLII
201: SSATIEAKTM SNFFNSSKKR HAPEGSTPGP KLEPAILSVE GRGFSVKIHY VEEPVSDYIR SVVSTILLIN EREPPGDVLV FLTGQEDIET AIKLLEEEAH
301: SNQKNSSGLL PLPLYSGLSR SEQELIFTPT PRGKRKVILS TNIAETSLTL EGVVYVIDSG FSKQKFYNPI SDIESLVVAP ISKASARQRS GRAGRVRPGK
401: CYRLYTEDYF LNQMPGEGIP EMQRSNLVST VIQLKALGID NILGFDWPAP PSSEAMIRAL EVLYSLQILD DDAKLTSPTG FQVAELPLDP MISKMILASS
501: ELGCSHEIIT IAAVLSVQSV WIIARGVQKE QDEAKLRFAA AEGDHVTFLN VYKGFLESKK PTQWCYKNFL NYQSMKKVVE IRDQLKRIAR RLGITLKSCD
601: GDMEAVRKAV TAGFFANACR LEPHSNGVYK TIRGSEEVYI HPSSVLFRVN PKWVVYQSIV STERQYMRNV VTINPSWLTE VAPHFYQNRQ NAMSF
101: QPRRLAVQAV SARVAEEMGV NLGEEVGYTI RFEDHTTSGV TSVKFLTDGV LIREMMEDPL LTKYSVIMID EAHERSISTD ILLGLLKKIQ RRRPELRLII
201: SSATIEAKTM SNFFNSSKKR HAPEGSTPGP KLEPAILSVE GRGFSVKIHY VEEPVSDYIR SVVSTILLIN EREPPGDVLV FLTGQEDIET AIKLLEEEAH
301: SNQKNSSGLL PLPLYSGLSR SEQELIFTPT PRGKRKVILS TNIAETSLTL EGVVYVIDSG FSKQKFYNPI SDIESLVVAP ISKASARQRS GRAGRVRPGK
401: CYRLYTEDYF LNQMPGEGIP EMQRSNLVST VIQLKALGID NILGFDWPAP PSSEAMIRAL EVLYSLQILD DDAKLTSPTG FQVAELPLDP MISKMILASS
501: ELGCSHEIIT IAAVLSVQSV WIIARGVQKE QDEAKLRFAA AEGDHVTFLN VYKGFLESKK PTQWCYKNFL NYQSMKKVVE IRDQLKRIAR RLGITLKSCD
601: GDMEAVRKAV TAGFFANACR LEPHSNGVYK TIRGSEEVYI HPSSVLFRVN PKWVVYQSIV STERQYMRNV VTINPSWLTE VAPHFYQNRQ NAMSF
Arabidopsis Description
Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9 [Source:UniProtKB/Swiss-Prot;Acc:F4JRJ6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.