Factsheet for VIT_10s0003g00810.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400046188	Potato	nucleus	81.84	82.32
Solyc09g097820.2.1	Tomato	nucleus	81.84	81.96
KRH21325	Soybean	nucleus	78.53	81.83
GSMUA_Achr11P...	Banana	nucleus	43.37	79.42
Os01t0212100-01	Rice	nucleus	77.95	77.29
AT4G18465.1	Thale cress	nucleus	77.38	77.27
Bra013313.1-P	Field mustard	nucleus	77.23	76.9
OQU86123	Sorghum	nucleus	77.52	76.86
TraesCS3D01G148100.1	Wheat	nucleus	77.52	76.75
CDX78859	Canola	nucleus	77.09	76.65
TraesCS3B01G165500.1	Wheat	nucleus	77.38	76.6
CDX99466	Canola	nucleus	77.09	76.43
TraesCS3A01G131800.1	Wheat	nucleus	76.95	76.18
HORVU3Hr1G028550.17	Barley	cytosol	73.05	72.74
Zm00001d039380_P001	Maize	nucleus	66.14	48.47
VIT_07s0005g01770.t01	Wine grape	nucleus	44.67	42.58
VIT_01s0137g00640.t01	Wine grape	nucleus	42.22	40.36
VIT_01s0010g02780.t01	Wine grape	nucleus	33.0	35.78
VIT_01s0010g02920.t01	Wine grape	nucleus	38.76	30.74
VIT_17s0000g06950.t01	Wine grape	nucleus	44.81	29.51
VIT_08s0056g00470.t01	Wine grape	nucleus	46.25	27.32
VIT_08s0032g01230.t01	Wine grape	nucleus, plastid	30.84	20.88
VIT_17s0000g03030.t01	Wine grape	nucleus	31.27	20.53
VIT_01s0011g04360.t01	Wine grape	plastid	30.26	17.78
VIT_07s0005g00860.t01	Wine grape	nucleus	33.43	17.56
VIT_12s0028g01050.t01	Wine grape	nucleus	28.24	15.92
VIT_12s0035g00800.t01	Wine grape	nucleus	28.96	14.68
VIT_07s0191g00210.t01	Wine grape	nucleus	30.4	12.15

Protein Annotations

Gene3D:1.20.120.1080	EntrezGene:100257193	wikigene:100257193	Gene3D:3.40.50.300	MapMan:35.1	ProteinID:CBI30650
ProteinID:CBI30650.3	ncoils:Coil	UniProt:D7TJH8	EntrezGene:DHX35	wikigene:DHX35	InterPro:DNA/RNA_helicase_DEAH_CS
InterPro:DUF1605	EMBL:FN595992	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005681	GO:GO:0005737	GO:GO:0006139
GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	InterPro:Helicase-assoc_dom
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:P-loop_NTPase	PFAM:PF00271
PFAM:PF04408	PFAM:PF07717	ScanProsite:PS00690	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR18934
PANTHER:PTHR18934:SF136	SMART:SM00487	SMART:SM00490	SMART:SM00847	SUPFAM:SSF52540	TIGR:TC61932
UniParc:UPI0001BE378F	ArrayExpress:VIT_10s0003g00810	EnsemblPlantsGene:VIT_10s0003g00810	EnsemblPlants:VIT_10s0003g00810.t01	RefSeq:XP_002276679	RefSeq:XP_002276679.2
RefSeq:XP_010655487.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr10:+:2051977..2083936

Molecular Weight (calculated)

77360.1 Da

IEP (calculated)

7.791

GRAVY (calculated)

-0.165

Length

694 amino acids

Sequence
(BLAST)

001: MSQFWKPGSE KPRLLDDEEG GVLFYSASAS SSSGFGYSNI EKQRQRLPVY KYRTAILYLV ETHATTIIVG ETGSGKTTQI PQYLKEAGWA DGGRVIACTQ
101: PRRLAVQAVA SRVAEEMGVK LGEEVGYTIR FEDLSKTGVT MVKFLTDGVL LREMMDDPLL TKYSVIMVDE AHERSLSTDI LLGLLKKIQR RRPELRLIIS
201: SATIEAKSMS TFFQTRKRRG LEGEESGPRT DPAILSVEGR GFNVQIHHIE EPVPDYLQAA VSTVLSIHEQ EPMGDILVFL TGENDIDAAV QLLNEEAQNN
301: GKHSSGLVVL PLYSGLSRAD QDLVFSPTPR GKRKVVISTN IAETSLTLEG IVYVVDSGFS KQRFYNPISD IENLVVAPIS KASARQRAGR AGRVRPGKCY
401: RLYTEEYFVN EMSAHAIPEM QRSNLVSCVI QLKALGIDNI LGFDWPASPS PEAMIRALEV LYSLGVLDDD AKLTSPLGFQ VAEIPLDPMI SKTILSSNQL
501: GCSEEIITIA AILSVQSIWV SARGAQRELD EAKMRFAAAE GDHVTYLSVY KGFIQSGKSS QWCYKNFINY HAMKKVIEIR EQLRRIAQRL GIVLKSCERD
601: MEVVRKAVTA GFFANACCLE AHSQGGMYKT IRSAQEVYIH PSSVLFRVNP KWIIYNSLVS TDRQYMRNVI SIDPSWLMEA APHFYRQQRN PIAS

Best Arabidopsis Sequence Match ( AT4G18465.1 )
(BLAST)

001: MAFWKPGTEK PRFEEDGEGG IVFMSNNLAS SSSSSYGYAN IEKQRQRLPV YKYRTEILYL VENHATTIIV GETGSGKTTQ IPQYLKEAGW AEGGRVIACT
101: QPRRLAVQAV SARVAEEMGV NLGEEVGYTI RFEDHTTSGV TSVKFLTDGV LIREMMEDPL LTKYSVIMID EAHERSISTD ILLGLLKKIQ RRRPELRLII
201: SSATIEAKTM SNFFNSSKKR HAPEGSTPGP KLEPAILSVE GRGFSVKIHY VEEPVSDYIR SVVSTILLIN EREPPGDVLV FLTGQEDIET AIKLLEEEAH
301: SNQKNSSGLL PLPLYSGLSR SEQELIFTPT PRGKRKVILS TNIAETSLTL EGVVYVIDSG FSKQKFYNPI SDIESLVVAP ISKASARQRS GRAGRVRPGK
401: CYRLYTEDYF LNQMPGEGIP EMQRSNLVST VIQLKALGID NILGFDWPAP PSSEAMIRAL EVLYSLQILD DDAKLTSPTG FQVAELPLDP MISKMILASS
501: ELGCSHEIIT IAAVLSVQSV WIIARGVQKE QDEAKLRFAA AEGDHVTFLN VYKGFLESKK PTQWCYKNFL NYQSMKKVVE IRDQLKRIAR RLGITLKSCD
601: GDMEAVRKAV TAGFFANACR LEPHSNGVYK TIRGSEEVYI HPSSVLFRVN PKWVVYQSIV STERQYMRNV VTINPSWLTE VAPHFYQNRQ NAMSF

Arabidopsis Description

Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9 [Source:UniProtKB/Swiss-Prot;Acc:F4JRJ6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.