Factsheet for TraesCS3B01G165500.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G148100.1	Wheat	nucleus	99.71	99.71
TraesCS3A01G131800.1	Wheat	nucleus	98.86	98.86
HORVU3Hr1G028550.17	Barley	cytosol	93.87	94.4
OQU86123	Sorghum	nucleus	91.87	92.0
Os01t0212100-01	Rice	nucleus	91.73	91.86
GSMUA_Achr11P...	Banana	nucleus	41.94	77.57
VIT_10s0003g00810.t01	Wine grape	nucleus	76.6	77.38
PGSC0003DMT400046188	Potato	nucleus	74.04	75.22
Solyc09g097820.2.1	Tomato	nucleus	74.32	75.18
Bra013313.1-P	Field mustard	nucleus	73.75	74.17
AT4G18465.1	Thale cress	nucleus	73.47	74.1
CDX78859	Canola	nucleus	73.61	73.93
KRH21325	Soybean	nucleus	70.19	73.87
CDX99466	Canola	nucleus	73.75	73.86
Zm00001d039380_P001	Maize	nucleus	77.6	57.44
TraesCS4B01G180200.1	Wheat	cytosol	42.94	41.75
TraesCS7B01G060800.1	Wheat	plastid	39.94	39.27
TraesCS1B01G398400.1	Wheat	cytosol	20.97	37.22
TraesCS4B01G075500.1	Wheat	nucleus	35.95	35.74
TraesCS1B01G398100.1	Wheat	cytosol	30.67	31.2
TraesCS7B01G245800.1	Wheat	nucleus	45.93	29.93
TraesCS1B01G254900.1	Wheat	nucleus	45.22	29.91
TraesCS4B01G374800.1	Wheat	nucleus	44.22	29.64
TraesCS4B01G148500.1	Wheat	nucleus	47.08	26.74
TraesCS2B01G249700.1	Wheat	nucleus	40.8	22.64
TraesCS1B01G168700.3	Wheat	nucleus	31.81	21.63
TraesCS5B01G392800.1	Wheat	nucleus	30.24	18.43
TraesCS3B01G024900.1	Wheat	mitochondrion	31.67	17.8
TraesCS6B01G206600.1	Wheat	nucleus	32.52	17.73
TraesCS6B01G329000.1	Wheat	nucleus	31.95	16.98
TraesCS3B01G337600.3	Wheat	nucleus	26.11	15.31
TraesCS2B01G320800.1	Wheat	nucleus, plastid	29.1	14.29
TraesCS3B01G129700.1	Wheat	nucleus	30.24	13.04
TraesCS5B01G080500.1	Wheat	nucleus	24.11	12.77
TraesCS2B01G190100.1	Wheat	nucleus	30.81	12.46

Protein Annotations

Gene3D:1.20.120.1080	Gene3D:3.40.50.300	MapMan:35.1	InterPro:DNA/RNA_helicase_DEAH_CS	InterPro:DUF1605	GO:GO:0003674
GO:GO:0003824	GO:GO:0004386	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0009506	GO:GO:0016787	InterPro:Helicase-assoc_dom	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:P-loop_NTPase	PFAM:PF00271	PFAM:PF04408	PFAM:PF07717
ScanProsite:PS00690	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR18934	PANTHER:PTHR18934:SF136	SMART:SM00487
SMART:SM00490	SMART:SM00847	SUPFAM:SSF52540	EnsemblPlantsGene:TraesCS3B01G165500	EnsemblPlants:TraesCS3B01G165500.1	TIGR:cd00046
TIGR:cd00079	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3B:-:163691282..163709102

Molecular Weight (calculated)

78465.7 Da

IEP (calculated)

7.811

GRAVY (calculated)

-0.172

Length

701 amino acids

Sequence
(BLAST)

001: MSRFWRPGSE KPSASLVDDE EGGVLFLPTN TNASSSSSGF GYASLERLRQ RLPVYKYRKA ILYLVERHAT TIIVGETGSG KSTQIPQYLK EAGWAEGGRL
101: IGCTQPRRLA VQTVASRVAE EVGVKLGEEV GYTIRFEDET NPGMTMIKFL TDGVLIREMM EDPLLSKYSV IMIDEAHERS ISTDILLGLL KKIQRRRPEL
201: RLIISSATIE ARSMSTFFSN RRKNSLLKPA DGLPNPEPAI LSVEGRGYTV ETHYLEEPVS DYLQAAVNTV LIIHEKEPPG DILVFLTGQD DIDAALKLLN
301: DEIQHLGKHY FDLVILPLYS GLPRGDQDLI FAPTSKGKRK VVISTNIAET SLTLEGVVYV VDSGFSKQKC YNPISDLESL VVAPISKASA RQRAGRAGRV
401: RPGKCFRLYT EEYYLNEMQS DGIPEMQRSN LVSCIIQLKA LGIDNILGFD WPASPSPEAM IRALEILFSL GILDEDAKLT VPIGFQVAEM PLDPMISKMI
501: LSANDFGCSD EILTIAAFLS VQSVWVSMRG VKKEFDEAKL RFAAAEGDHV TFLNIYKGFH QSGKSSQWCY KNFLNHQALK KVIEIRAQLV RVMKRFGIQL
601: KSCDRDMQAV RKAIIAGSFA NSCHLEEYGQ NGMYKTIRTS QEVYIHPSSA LFRVNPKWVV YQSLVSTDKH YMRNVIAIEP SWLTEAAPHF YQFRTPNPAP
701: H

Best Arabidopsis Sequence Match ( AT4G18465.1 )
(BLAST)

001: MAFWKPGTEK PRFEEDGEGG IVFMSNNLAS SSSSSYGYAN IEKQRQRLPV YKYRTEILYL VENHATTIIV GETGSGKTTQ IPQYLKEAGW AEGGRVIACT
101: QPRRLAVQAV SARVAEEMGV NLGEEVGYTI RFEDHTTSGV TSVKFLTDGV LIREMMEDPL LTKYSVIMID EAHERSISTD ILLGLLKKIQ RRRPELRLII
201: SSATIEAKTM SNFFNSSKKR HAPEGSTPGP KLEPAILSVE GRGFSVKIHY VEEPVSDYIR SVVSTILLIN EREPPGDVLV FLTGQEDIET AIKLLEEEAH
301: SNQKNSSGLL PLPLYSGLSR SEQELIFTPT PRGKRKVILS TNIAETSLTL EGVVYVIDSG FSKQKFYNPI SDIESLVVAP ISKASARQRS GRAGRVRPGK
401: CYRLYTEDYF LNQMPGEGIP EMQRSNLVST VIQLKALGID NILGFDWPAP PSSEAMIRAL EVLYSLQILD DDAKLTSPTG FQVAELPLDP MISKMILASS
501: ELGCSHEIIT IAAVLSVQSV WIIARGVQKE QDEAKLRFAA AEGDHVTFLN VYKGFLESKK PTQWCYKNFL NYQSMKKVVE IRDQLKRIAR RLGITLKSCD
601: GDMEAVRKAV TAGFFANACR LEPHSNGVYK TIRGSEEVYI HPSSVLFRVN PKWVVYQSIV STERQYMRNV VTINPSWLTE VAPHFYQNRQ NAMSF

Arabidopsis Description

Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9 [Source:UniProtKB/Swiss-Prot;Acc:F4JRJ6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.