Factsheet for Os01t0212100-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU86123	Sorghum	nucleus	93.0	93.0
TraesCS3D01G148100.1	Wheat	nucleus	92.14	92.01
TraesCS3B01G165500.1	Wheat	nucleus	91.86	91.73
TraesCS3A01G131800.1	Wheat	nucleus	91.57	91.44
HORVU3Hr1G028550.17	Barley	cytosol	86.57	86.94
GSMUA_Achr11P...	Banana	nucleus	42.71	78.89
VIT_10s0003g00810.t01	Wine grape	nucleus	77.29	77.95
Bra013313.1-P	Field mustard	nucleus	75.0	75.32
CDX99466	Canola	nucleus	75.14	75.14
CDX78859	Canola	nucleus	74.86	75.07
AT4G18465.1	Thale cress	nucleus	74.14	74.68
PGSC0003DMT400046188	Potato	nucleus	73.57	74.64
Solyc09g097820.2.1	Tomato	nucleus	73.57	74.31
KRH21325	Soybean	nucleus	70.43	74.02
Zm00001d039380_P001	Maize	nucleus	78.0	57.66
Os02t0301500-01	Rice	nucleus	37.0	47.44
Os08t0335000-00	Rice	cytosol, nucleus	24.57	46.87
Os03t0314100-01	Rice	cytosol, nucleus, plastid	35.57	44.15
Os06t0192500-02	Rice	mitochondrion	22.57	38.73
Os11t0310800-01	Rice	nucleus	37.43	37.01
Os06t0343100-01	Rice	nucleus	45.71	29.52
Os05t0389800-01	Rice	nucleus	44.86	29.35
Os07t0508000-01	Rice	nucleus	41.14	22.5
Os10t0471350-01	Rice	nucleus	32.0	22.44
Os01t0118100-01	Rice	cytosol, mitochondrion, nucleus	25.71	22.0
Os03t0748800-01	Rice	mitochondrion	31.0	18.87
Os02t0736600-01	Rice	nucleus	31.14	17.14
Os01t0767700-01	Rice	nucleus	28.43	16.27
Os07t0621500-01	Rice	cytosol, nucleus	19.29	10.49
Os04t0432200-00	Rice	extracellular	0.57	5.48
Os02t0736800-01	Rice	mitochondrion	0.0	0.0

Protein Annotations

Gene3D:1.20.120.1080	Gene3D:3.40.50.300	MapMan:35.1	EntrezGene:4325567	InterPro:AAA+_ATPase	EMBL:AK101456
ProteinID:BAD73035.1	ProteinID:BAF04291.1	ProteinID:BAS70996.1	InterPro:DNA/RNA_helicase_DEAH_CS	InterPro:DUF1605	ProteinID:EEE54101.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004004
GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005681	GO:GO:0005737	GO:GO:0005829	GO:GO:0006139	GO:GO:0006396
GO:GO:0008150	GO:GO:0008152	GO:GO:0009506	GO:GO:0009987	GO:GO:0016787	InterPro:Helicase-assoc_dom
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	EnsemblPlantsGene:Os01g0212100	EnsemblPlants:Os01t0212100-01
InterPro:P-loop_NTPase	PFAM:PF00271	PFAM:PF04408	PFAM:PF07717	PFAM:PF13401	ScanProsite:PS00690
PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR18934	PANTHER:PTHR18934:SF136	UniProt:Q5QNI3	SMART:SM00487
SMART:SM00490	SMART:SM00847	SUPFAM:SSF52540	UniParc:UPI000048DE4E	RefSeq:XP_015622104.1	RefSeq:XP_015622105.1
SEG:seg	:	:	:	:	:

Description

DEAD-like helicase, N-terminal domain containing protein. (Os01t0212100-01);Similar to P20Sh148J07 (Fragment). (Os01t0212100-02)

Coordinates

chr1:+:6112811..6125509

Molecular Weight (calculated)

78636.0 Da

IEP (calculated)

7.608

GRAVY (calculated)

-0.165

Length

700 amino acids

Sequence
(BLAST)

001: MSRFWRPGSE KPTAAIVEDE EGGVLFLPTS TSSSSSSGFG YASLERQRQR LPVYKYRKAI LYLVERHATT IVVGETGSGK STQIPQYLKE AGWAEGGRLI
101: GCTQPRRLAV QSVASRVAEE VGVRLGEEVG YTIRFEDQTN PGMTMIKFLT DGVLIREMME DPLLTKYSVI MVDEAHERSI STDMLLGLLK KIQRRRPDLR
201: LIISSATIEA RSMSTFFNIR RKNSMLESAD HLPNPEPAIL SVEGKGYTVE IHYVEEPVSD YLQAAVNTVL IIHEKEPPGD ILVFLTGQDD IDAAVKMLNE
301: EIQHRGRHYL DLLILPLYSG LPRGDQDLIF TPTSKGKRKV VISTNIAETS LTLEGVVYVV DSGFSKQKCY NPISDIESLV VAPISKASAR QRAGRAGRVR
401: PGKCFRLYTE EFYLKEMQPE GIPEMQRSNL VSCITQLKAL GIDNILGFDW PASPSPEAMI RALEVLYSLG ILDEDAKLTV PLGFQVAEIP LDPMISKMIL
501: SANNFGCSDE ILTIAAFLSV QSVWVSMRGV KKEFDEAKLR FAAAEGDHVT FLNIYKGFHQ SGKSSQWCYK NFLNHQALKK VIDIREQLVR IIKRFGIPLT
601: SCDRDMEAVR KAIIAGAFAY ACHLEEYSQN GMYKTIRTSQ EVYIHPSSVL FRVNPKWVIY QSLVSTDKHY MRNVIAIEPS WLTEAAPHFY QFRTPNPALH

Best Arabidopsis Sequence Match ( AT4G18465.1 )
(BLAST)

001: MAFWKPGTEK PRFEEDGEGG IVFMSNNLAS SSSSSYGYAN IEKQRQRLPV YKYRTEILYL VENHATTIIV GETGSGKTTQ IPQYLKEAGW AEGGRVIACT
101: QPRRLAVQAV SARVAEEMGV NLGEEVGYTI RFEDHTTSGV TSVKFLTDGV LIREMMEDPL LTKYSVIMID EAHERSISTD ILLGLLKKIQ RRRPELRLII
201: SSATIEAKTM SNFFNSSKKR HAPEGSTPGP KLEPAILSVE GRGFSVKIHY VEEPVSDYIR SVVSTILLIN EREPPGDVLV FLTGQEDIET AIKLLEEEAH
301: SNQKNSSGLL PLPLYSGLSR SEQELIFTPT PRGKRKVILS TNIAETSLTL EGVVYVIDSG FSKQKFYNPI SDIESLVVAP ISKASARQRS GRAGRVRPGK
401: CYRLYTEDYF LNQMPGEGIP EMQRSNLVST VIQLKALGID NILGFDWPAP PSSEAMIRAL EVLYSLQILD DDAKLTSPTG FQVAELPLDP MISKMILASS
501: ELGCSHEIIT IAAVLSVQSV WIIARGVQKE QDEAKLRFAA AEGDHVTFLN VYKGFLESKK PTQWCYKNFL NYQSMKKVVE IRDQLKRIAR RLGITLKSCD
601: GDMEAVRKAV TAGFFANACR LEPHSNGVYK TIRGSEEVYI HPSSVLFRVN PKWVVYQSIV STERQYMRNV VTINPSWLTE VAPHFYQNRQ NAMSF

Arabidopsis Description

Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9 [Source:UniProtKB/Swiss-Prot;Acc:F4JRJ6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.