Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX78859 | Canola | nucleus | 98.86 | 99.14 |
| Bra013313.1-P | Field mustard | nucleus | 98.14 | 98.57 |
| AT4G18465.1 | Thale cress | nucleus | 93.57 | 94.24 |
| PGSC0003DMT400046188 | Potato | nucleus | 76.29 | 77.39 |
| VIT_10s0003g00810.t01 | Wine grape | nucleus | 76.43 | 77.09 |
| Solyc09g097820.2.1 | Tomato | nucleus | 75.71 | 76.48 |
| OQU86123 | Sorghum | nucleus | 75.57 | 75.57 |
| KRH21325 | Soybean | nucleus | 71.86 | 75.53 |
| Os01t0212100-01 | Rice | nucleus | 75.14 | 75.14 |
| TraesCS3D01G148100.1 | Wheat | nucleus | 74.14 | 74.04 |
| TraesCS3B01G165500.1 | Wheat | nucleus | 73.86 | 73.75 |
| TraesCS3A01G131800.1 | Wheat | nucleus | 73.86 | 73.75 |
| GSMUA_Achr11P... | Banana | nucleus | 38.43 | 70.98 |
| HORVU3Hr1G028550.17 | Barley | cytosol | 69.86 | 70.16 |
| Zm00001d039380_P001 | Maize | nucleus | 64.43 | 47.62 |
| CDX74061 | Canola | cytosol | 21.0 | 45.79 |
| CDX74059 | Canola | nucleus | 16.57 | 43.94 |
| CDY68405 | Canola | nucleus | 41.86 | 43.73 |
| CDY37024 | Canola | cytosol, mitochondrion | 19.71 | 42.59 |
| CDX76626 | Canola | nucleus | 43.0 | 41.92 |
| CDY11413 | Canola | nucleus | 42.86 | 41.78 |
| CDX83337 | Canola | cytosol | 43.0 | 41.63 |
| CDX95715 | Canola | cytosol | 42.71 | 41.24 |
| CDY23338 | Canola | cytosol | 24.29 | 40.28 |
| CDY36075 | Canola | nucleus | 38.43 | 39.91 |
| CDY34567 | Canola | nucleus | 37.71 | 39.82 |
| CDX85017 | Canola | cytosol, plastid | 40.0 | 38.78 |
| CDY16154 | Canola | nucleus, plastid | 39.43 | 38.17 |
| CDY32702 | Canola | nucleus | 37.43 | 37.86 |
| CDY02818 | Canola | nucleus | 35.43 | 37.35 |
| CDY60185 | Canola | nucleus | 44.29 | 36.09 |
| CDY40514 | Canola | nucleus | 43.86 | 35.66 |
| CDY11762 | Canola | nucleus | 35.86 | 35.65 |
| CDX90112 | Canola | nucleus | 35.71 | 35.46 |
| CDY32278 | Canola | endoplasmic reticulum | 43.71 | 29.31 |
| CDY26898 | Canola | nucleus | 43.71 | 29.31 |
| CDY23802 | Canola | nucleus | 21.14 | 28.19 |
| CDX83624 | Canola | nucleus | 43.71 | 27.44 |
| CDY13640 | Canola | nucleus | 43.86 | 27.29 |
| CDX91491 | Canola | nucleus | 2.14 | 23.81 |
| CDY51663 | Canola | nucleus | 2.14 | 23.81 |
| CDX85676 | Canola | nucleus | 40.57 | 22.76 |
| CDX91151 | Canola | nucleus | 40.43 | 22.66 |
| CDX84588 | Canola | plastid, vacuole | 30.86 | 20.87 |
| CDX79642 | Canola | nucleus, vacuole | 30.86 | 20.87 |
| CDY17694 | Canola | nucleus | 30.29 | 18.68 |
| CDY57512 | Canola | nucleus | 29.86 | 18.41 |
| CDX93688 | Canola | plastid | 30.29 | 17.97 |
| CDY40601 | Canola | nucleus, plastid | 30.29 | 17.95 |
| CDY10756 | Canola | nucleus | 27.57 | 17.72 |
| CDX98799 | Canola | mitochondrion | 28.86 | 17.5 |
| CDY48353 | Canola | nucleus | 30.57 | 17.5 |
| CDX70187 | Canola | mitochondrion | 28.86 | 17.47 |
| CDY34159 | Canola | nucleus | 30.57 | 17.3 |
| CDX97797 | Canola | nucleus | 27.86 | 15.1 |
| CDY29644 | Canola | nucleus | 27.71 | 14.84 |
| CDY39917 | Canola | nucleus | 29.57 | 14.65 |
| CDY29164 | Canola | nucleus | 29.57 | 14.54 |
| CDY63687 | Canola | nucleus, plastid | 22.86 | 14.41 |
| CDY10215 | Canola | nucleus | 26.0 | 14.17 |
| CDX78376 | Canola | plastid | 31.43 | 12.52 |
| CDX81170 | Canola | plastid | 31.29 | 12.42 |
| CDX69841 | Canola | plastid | 31.29 | 12.39 |
| CDX96996 | Canola | nucleus | 31.29 | 12.38 |
Protein Annotations
| Gene3D:1.20.120.1080 | Gene3D:3.40.50.300 | MapMan:35.1 | GO:A0A078EEB4 | EnsemblPlants:CDX99466 | ProteinID:CDX99466 |
| ProteinID:CDX99466.1 | InterPro:DNA/RNA_helicase_DEAH_CS | InterPro:DUF1605 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004386 |
| GO:GO:0016787 | EnsemblPlantsGene:GSBRNA2T00107810001 | InterPro:Helicase-assoc_dom | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 |
| InterPro:IPR014001 | InterPro:P-loop_NTPase | PFAM:PF00271 | PFAM:PF04408 | PFAM:PF07717 | ScanProsite:PS00690 |
| PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR18934 | PANTHER:PTHR18934:SF136 | SMART:SM00487 | SMART:SM00490 |
| SMART:SM00847 | SUPFAM:SSF52540 | UniParc:UPI0004EEF7AA | SEG:seg | : | : |
Description
BnaC01g10860D
Coordinates
chrLK031910:-:869069..873788
Molecular Weight (calculated)
78318.3 Da
IEP (calculated)
8.229
GRAVY (calculated)
-0.203
Length
700 amino acids
Sequence
(BLAST)
(BLAST)
001: MAFWKPGTEK PSFVEDEEGG IVLMSNNLSS SSSSSFGYAN IEKQRQRLPV YKYRTEILYL VENHATTIIV GETGSGKTTQ IPQYLKEAGW AEGGRVIACT
101: QPRRLAVQSV SKRVADEMGV NLGDEVGYTI RFEDHTTSGV TSVKFLTDGV LIREMMEDPL LTKYSVIMVD EAHERSISTD ILLGLLKKIQ RRRPELRLII
201: SSATIEAKAM FNFFNTSKKR QAPEGSAQGP NLEPAILSVE GRGFSVKIHY VEEPVSDYIR SVVSTILLIN EREPPGDVLV FLTGQDDIET AIKLLAEEAH
301: SNQKNSSGLL PLPLYSGLSR TEQELIFTPT PRGKRKVILS TNIAETSLTL EARLLCYFVY VIDSGFSKQK FYNPISDIES LVVAPISKAS ARQRSGRAGR
401: VRPGKCYRLY TEDYFLKEMP GEGIPEMQRS NLVSTVIQLK ALGIDNILGF DWPSPPSPQA MIRALEVLYS LQILDDDAKL TSPTGFQVAE LPLDPMISKM
501: ILASNELGCS DEIITIAAVL SIQSVWVIAR GVQKEQDEAK LRFAAAEGDH VTFLNVYKGF LESKKSSQWC YKNFLNYQSM KKVVEIRDQL KRIARRLGIT
601: LKSCDGDIDA VRKAVTAGFF ANACRLEPHS NGVFKTIRGS EEVYIHPSSV LFRVNPKWVV YQSIVSTERQ YMRNVVTINP SWLTEAAPHF YQNRQNNMSL
101: QPRRLAVQSV SKRVADEMGV NLGDEVGYTI RFEDHTTSGV TSVKFLTDGV LIREMMEDPL LTKYSVIMVD EAHERSISTD ILLGLLKKIQ RRRPELRLII
201: SSATIEAKAM FNFFNTSKKR QAPEGSAQGP NLEPAILSVE GRGFSVKIHY VEEPVSDYIR SVVSTILLIN EREPPGDVLV FLTGQDDIET AIKLLAEEAH
301: SNQKNSSGLL PLPLYSGLSR TEQELIFTPT PRGKRKVILS TNIAETSLTL EARLLCYFVY VIDSGFSKQK FYNPISDIES LVVAPISKAS ARQRSGRAGR
401: VRPGKCYRLY TEDYFLKEMP GEGIPEMQRS NLVSTVIQLK ALGIDNILGF DWPSPPSPQA MIRALEVLYS LQILDDDAKL TSPTGFQVAE LPLDPMISKM
501: ILASNELGCS DEIITIAAVL SIQSVWVIAR GVQKEQDEAK LRFAAAEGDH VTFLNVYKGF LESKKSSQWC YKNFLNYQSM KKVVEIRDQL KRIARRLGIT
601: LKSCDGDIDA VRKAVTAGFF ANACRLEPHS NGVFKTIRGS EEVYIHPSSV LFRVNPKWVV YQSIVSTERQ YMRNVVTINP SWLTEAAPHF YQNRQNNMSL
001: MAFWKPGTEK PRFEEDGEGG IVFMSNNLAS SSSSSYGYAN IEKQRQRLPV YKYRTEILYL VENHATTIIV GETGSGKTTQ IPQYLKEAGW AEGGRVIACT
101: QPRRLAVQAV SARVAEEMGV NLGEEVGYTI RFEDHTTSGV TSVKFLTDGV LIREMMEDPL LTKYSVIMID EAHERSISTD ILLGLLKKIQ RRRPELRLII
201: SSATIEAKTM SNFFNSSKKR HAPEGSTPGP KLEPAILSVE GRGFSVKIHY VEEPVSDYIR SVVSTILLIN EREPPGDVLV FLTGQEDIET AIKLLEEEAH
301: SNQKNSSGLL PLPLYSGLSR SEQELIFTPT PRGKRKVILS TNIAETSLTL EGVVYVIDSG FSKQKFYNPI SDIESLVVAP ISKASARQRS GRAGRVRPGK
401: CYRLYTEDYF LNQMPGEGIP EMQRSNLVST VIQLKALGID NILGFDWPAP PSSEAMIRAL EVLYSLQILD DDAKLTSPTG FQVAELPLDP MISKMILASS
501: ELGCSHEIIT IAAVLSVQSV WIIARGVQKE QDEAKLRFAA AEGDHVTFLN VYKGFLESKK PTQWCYKNFL NYQSMKKVVE IRDQLKRIAR RLGITLKSCD
601: GDMEAVRKAV TAGFFANACR LEPHSNGVYK TIRGSEEVYI HPSSVLFRVN PKWVVYQSIV STERQYMRNV VTINPSWLTE VAPHFYQNRQ NAMSF
101: QPRRLAVQAV SARVAEEMGV NLGEEVGYTI RFEDHTTSGV TSVKFLTDGV LIREMMEDPL LTKYSVIMID EAHERSISTD ILLGLLKKIQ RRRPELRLII
201: SSATIEAKTM SNFFNSSKKR HAPEGSTPGP KLEPAILSVE GRGFSVKIHY VEEPVSDYIR SVVSTILLIN EREPPGDVLV FLTGQEDIET AIKLLEEEAH
301: SNQKNSSGLL PLPLYSGLSR SEQELIFTPT PRGKRKVILS TNIAETSLTL EGVVYVIDSG FSKQKFYNPI SDIESLVVAP ISKASARQRS GRAGRVRPGK
401: CYRLYTEDYF LNQMPGEGIP EMQRSNLVST VIQLKALGID NILGFDWPAP PSSEAMIRAL EVLYSLQILD DDAKLTSPTG FQVAELPLDP MISKMILASS
501: ELGCSHEIIT IAAVLSVQSV WIIARGVQKE QDEAKLRFAA AEGDHVTFLN VYKGFLESKK PTQWCYKNFL NYQSMKKVVE IRDQLKRIAR RLGITLKSCD
601: GDMEAVRKAV TAGFFANACR LEPHSNGVYK TIRGSEEVYI HPSSVLFRVN PKWVVYQSIV STERQYMRNV VTINPSWLTE VAPHFYQNRQ NAMSF
Arabidopsis Description
Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9 [Source:UniProtKB/Swiss-Prot;Acc:F4JRJ6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.