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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 5
  • mitochondrion 1
  • nucleus 2
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra009038.1-P Field mustard plastid 98.98 98.98
CDX96996 Canola nucleus 92.59 92.48
CDX78376 Canola plastid 81.78 82.24
CDX81170 Canola plastid 81.55 81.74
AT5G10370.1 Thale cress nucleus 77.7 77.35
AT4G01020.1 Thale cress nucleus 77.08 76.22
KRG97543 Soybean nucleus, plastid 53.71 54.89
KRH31333 Soybean nucleus, plastid 52.74 53.69
PGSC0003DMT400041805 Potato nucleus 48.67 53.02
GSMUA_Achr8P17640_001 Banana nucleus 36.28 52.03
Solyc11g010310.1.1 Tomato nucleus 49.52 51.32
PGSC0003DMT400060759 Potato nucleus 50.2 51.3
Solyc04g014210.2.1 Tomato nucleus 50.2 51.27
OQU90279 Sorghum nucleus 41.6 48.45
VIT_07s0191g00210.t01 Wine grape nucleus 47.37 48.19
TraesCS5B01G080500.1 Wheat nucleus 35.6 47.54
Os07t0621500-01 Rice cytosol, nucleus 34.58 47.47
TraesCS5A01G074100.1 Wheat nucleus 43.35 45.6
TraesCS2D01G171200.2 Wheat nucleus 45.05 45.59
TraesCS5D01G087800.2 Wheat nucleus 43.07 45.43
TraesCS2B01G190100.1 Wheat nucleus 44.48 45.33
Zm00001d022176_P002 Maize nucleus 44.71 45.09
HORVU5Hr1G019730.1 Barley nucleus, plastid 42.61 44.09
TraesCS3D01G112900.1 Wheat nucleus 33.28 43.98
TraesCS3B01G129700.1 Wheat nucleus 40.35 43.85
TraesCS3A01G111000.1 Wheat nucleus 43.52 43.84
TraesCS2A01G164100.1 Wheat nucleus 44.88 43.79
HORVU2Hr1G030040.17 Barley nucleus 44.14 42.74
CDX74059 Canola nucleus 5.26 35.23
CDX74061 Canola cytosol 6.06 33.33
CDY36075 Canola nucleus 12.62 33.09
CDY34567 Canola nucleus 12.34 32.88
CDY68405 Canola nucleus 12.39 32.69
CDY23338 Canola cytosol 7.75 32.46
CDY37024 Canola cytosol, mitochondrion 5.89 32.1
CDY11413 Canola nucleus 12.79 31.48
CDX85017 Canola cytosol, plastid 12.85 31.44
CDY11762 Canola nucleus 12.51 31.39
CDX90112 Canola nucleus 12.51 31.35
CDX99466 Canola nucleus 12.39 31.29
CDY16154 Canola nucleus, plastid 12.79 31.26
CDX76626 Canola nucleus 12.68 31.2
CDX78859 Canola nucleus 12.28 31.09
CDY32702 Canola nucleus 12.0 30.64
CDX83337 Canola cytosol 12.51 30.57
CDX95715 Canola cytosol 12.51 30.48
CDY02818 Canola nucleus 11.32 30.12
CDY60185 Canola nucleus 13.24 27.24
CDY40514 Canola nucleus 13.24 27.18
CDY32278 Canola endoplasmic reticulum 14.43 24.43
CDY26898 Canola nucleus 14.37 24.33
CDX83624 Canola nucleus 14.88 23.59
CDY13640 Canola nucleus 14.88 23.38
CDY57512 Canola nucleus 14.26 22.2
CDY17694 Canola nucleus 14.26 22.2
CDY23802 Canola nucleus 6.56 22.1
CDX84588 Canola plastid, vacuole 12.9 22.03
CDX79642 Canola nucleus, vacuole 12.85 21.93
CDX98799 Canola mitochondrion 14.09 21.58
CDX70187 Canola mitochondrion 14.04 21.45
CDX93688 Canola plastid 14.2 21.27
CDY40601 Canola nucleus, plastid 14.2 21.25
CDX85676 Canola nucleus 13.64 19.31
CDX91151 Canola nucleus 13.64 19.3
CDY10756 Canola nucleus 11.43 18.55
CDY48353 Canola nucleus 12.39 17.91
CDY34159 Canola nucleus 12.34 17.62
CDX97797 Canola nucleus 12.22 16.73
CDY29644 Canola nucleus 12.28 16.6
CDY39917 Canola nucleus 13.02 16.28
CDY29164 Canola nucleus 13.07 16.22
CDY10215 Canola nucleus 11.71 16.12
CDY63687 Canola nucleus, plastid 9.56 15.23
CDX91491 Canola nucleus 0.51 14.29
CDY51663 Canola nucleus 0.51 14.29
Protein Annotations
Gene3D:1.10.10.2130Gene3D:1.20.120.1750MapMan:19.2.2.1.5.4.3Gene3D:3.30.40.10Gene3D:3.40.50.300GO:A0A078BYM0
EnsemblPlants:CDX69841ProteinID:CDX69841ProteinID:CDX69841.1ncoils:CoilInterPro:DEAD/DEAH_box_helicase_domInterPro:DNA/RNA_helicase_DEAH_CS
InterPro:DUF1605GO:GO:0000166GO:GO:0003674GO:GO:0003676GO:GO:0003824GO:GO:0004386
GO:GO:0005488GO:GO:0005524GO:GO:0016787EnsemblPlantsGene:GSBRNA2T00135900001InterPro:Helicase-assoc_domInterPro:Helicase_ATP-bd
InterPro:Helicase_CInterPro:IBR_domInterPro:IPR001650InterPro:IPR001841InterPro:IPR013083InterPro:IPR013087
InterPro:IPR014001InterPro:P-loop_NTPasePFAM:PF00270PFAM:PF00271PFAM:PF01485PFAM:PF04408
PFAM:PF07717PFAM:PF13923ScanProsite:PS00028ScanProsite:PS00518ScanProsite:PS00690PFscan:PS50089
PFscan:PS51192PFscan:PS51194PANTHER:PTHR18934PANTHER:PTHR18934:SF81SMART:SM00487SMART:SM00490
SMART:SM00647SMART:SM00847SUPFAM:SSF52540SUPFAM:SSF57850UniParc:UPI0004EEBE12InterPro:Znf_C2H2_type
InterPro:Znf_RINGInterPro:Znf_RING/FYVE/PHDInterPro:Znf_RING_CSSEG:seg::
Description
BnaA10g21900D
Coordinates
chrLK031790:-:2053327..2058910
Molecular Weight (calculated)
199392.0 Da
IEP (calculated)
7.087
GRAVY (calculated)
-0.272
Length
1767 amino acids
Sequence
(BLAST)
0001: MRSSLPPPNS GRSTTTNRQL SLPSASTNRS NSRSSHSSPP LTHRPTQNHP HRNHHYPNSS FPPNHRPDRG PTTRSRPNFI VQLVHPRTTT AANTDANTSF
0101: SVRKQAIITL ASLCGIPEDS VHIPQLGSVA GTFNFRQWTD ALSAVVSLWD HRLRGKHDFV PELVPHVIVP SDVDELRDRL RDLFSSHVIS LVENGESVKK
0201: VRREIDEKSR RAESFDSKRG LRLEVFEMKK ALEAERDLVI KRLEEFENAM MSIVRFLKRS DDGVEVDDVD VFSLEGDYDW PRVHSLIRRE CRRLDDGLPI
0301: YAYRQNILKK VYGQQVTVLI GETGSGKSTQ LVQFLADSGI AASESIVCTQ PRKIAALTLA DRVREESNGC YEEEDSVSCT PAYSSAEKFS AKVVFMTDNC
0401: LLQHYIRDNS LSGVSCVIID EAHERSLNTD LVLALLKDLM CRRVDLRLVI MSATADAYQL SGYFFGCEIL RVAGRNFPVE IIYSPSGDTE GTSYADDVVK
0501: KAMEVHRTEK EGTILAFLTS QAEVEWACER FIAPSAVALP LHGKLSFEEQ FRVFQNYPGR RKVIFATNIA ETSLTIPGVK YVIDSGMVKE SKYEARTGMS
0601: ILKVCRVSKS SAQQRAGRAG RTEAGRCYRL YSKYEFTSMS LNQEPEIRRV PLGVAILRIL ALGVDNLADF DFIDAPDPEA VVMAVKNLVQ LGAVVERNGV
0701: LELTQEGHCL VKLGLEPKLG KLILGCFRHR MGKEGIVLAA VMANASSIFC RVGNFDDKMK ADCLKVKFCN HDGDLFTLLS VYKEWASLPR ERRNKWCWEN
0801: SLNAKSMRRC EDTVKELEIC IERELSLVSP SYWVWNPAEG NNKHEKHMKM VILASLAENV AMYTGYDQLG YEVALTGQQV QLHPSCSLLA FGQKPNWVVF
0901: GELLSVVDQY LVCVTAFDFE ALSTLDPPPP FDASHMDEWR LRVKKVAGCS STMLKRFCGK SNRGLLSIVS RARSLCEDER INIQVDVEQN EILMYAPPHD
1001: MDKVSALMND ALECEKKLMR NECLEKYIYH GGGQVPLALF GSGAQIKHLE VDQRFLTVDV LYYGDNSLDD REVLTFLEKE IDGCICSIHK YAGKKQDCDE
1101: KEKWGRVTFL TPESAMKATE TQKFDLNGSV IKLFPSLSAG GEGVFKMPSV TAIIRWPRRE SCGKGVLKCA SGDIHRIFAG SSGIMIGTKY CPFETDQKHT
1201: DSILITGIDT NLSDAEVLDV LEFATERTDL EFFLFRGGNI AYRPSLTDCK YMLHKRIFAR LSSRNPDPNC VEVKVYVPKE KDHFVRALIT FDGRLHLEAA
1301: KALQELDGTI LDGCYPWQKI KCEQKFQSSI ICPAFIYNIV RRQLYAKLAS FERQRECEWH LEAIHSGAYR VKISANATRR VSEMRRSLEE LIRGRPIINH
1401: PGLTPRVLQH LLSREGVILM RKIQQETETC IVVDRQSLAV RICGSEERIA AAEQELVRSL LAYHESKQLE IRLRGPNLRP DLMKEVVNRF GPELQGIKEK
1501: VKGVDLKLNT RYHVIHVHGS VEMRQEVEKM VYELTQEEGS APDDVEVECP ICLSEVEDGY SLEGCSHLFC KACLLEQLEA SMRNFDAFPI ICSHIDCGAP
1601: MVVADMRALL SQEKLDELFR ASLSSFVTTS DGKFRFCSTP DCPSIYRVAG PLDSGVPFFC GACNSKTCTR CHLEYHRYIT CERYKLFKED PDMSLKDWAK
1701: GKNVKECPCC KSTIEKSEGC NHLLCRCGNH ICWVCLRWFA QQEPCYEHLR AVHGGIGLFD ELGMAML
Best Arabidopsis Sequence Match ( AT5G10370.1 )
(BLAST)
0001: MRNSFPPSDG GRSATDRRQQ SSHSSSTNRY NSRSAQSSPP LNHRPTWNQQ HSQYPNSNFP PNYRRDRNPS SGYSPPVTRA RPNFIVQLLH PAAANSDTKL
0101: CFSTKKQEIE SLALLCEIPE ESIHVPQFGC IAGSFSFRQW VDARSAVVAL WDYRLQGKHE FVPELIPNVI VPSDMNELKD RLRDLFSSHI LSLMENGEGV
0201: KKVRLEIEEK SRQVVSFSSK RGLKFEVFEK KKAIEAERDL VVNRLEEFNN AMKSILRYLI GQDGYEFDLD DEEEGDVAVF CLEGAYDWRR IHCLIRRECR
0301: RLEDGLPIYA YRRQILKKIH REQIMVLIGE TGSGKSTQLV QFLADSGVAA SESIVCTQPR KIAAMTLADR VREESSGCYE ENTVSCTPTF SSTEEISSKV
0401: VYMTDNCLLQ HYMKDRSLSG ISCVIIDEAH ERSLNTDLLL ALLKKLLSRR IDLRLVIMSA TADAKQLSQY FFSCGILLVN GRNFPVEIVY SPSDTEENSV
0501: VGGIASYVGD VVKMAVEIHK TEKEGTILAF LTSQAEVEWA CERFITPSAI ALPLHGKLSF EEQFRVFQNH PGRRKVIFAT NIAETSLTIP GVKYVIDSGM
0601: VKESKYEPRT GMSILKVCRV SQSSARQRAG RAGRTEPGRC YRLYSKNDFD SMNLNQEPEI RRVHLGVALL RMLALGVNNI AEFNFVDAPV PEAIAMAVQN
0701: LVQLGAVVEK NGVHELTQEG HCLVKLGLEP KLGKLILGCF RHRMGKEGIV LAAVMANASS IFCRVGNFDD KMKADRLKVQ FCNQNGDLFT LLSVYKEWAS
0801: LPRERRNKWC WENSLNAKSM RRCEDTVKEL EICIERELTL VSPSYWVWNP NEGTKHDKHL KMVILASLAE NVAMYTGYNQ LGYEVALTGQ QVQLHPSCSL
0901: LAFGQKPSWV VFGELLSIVD QYLVCVTACD FEALYMLDPP PPFDVSQMDE RRLRIKKVVG CSSTVLKRFC GKSNRSLLSI VSRARSLCSD ERIGIQVDVD
1001: QNEIRLYAPP LDMEKVSALV NDALECEKKW MHNECLEKYL YHGRGQVPIA LFGSGAQIKH LEVDQRFLTV DVLYYGDDVV DDRELLTFLE KKIDGSICSI
1101: YKFAANKQDC DEKEKWGRIT FLTPESAMKA TEIQKFYFKG SVLKLFPSLS TGGGIFKMPY FSSVTAKIRW PRRESSGRGC LKCPSGDIHR ILGDISSLEI
1201: GTNYVHIQRD QQSNDSILIS GLGDLSEAEV LDVLEFRTQR RDLNFFIFRK KYSVQCPSPT ACEEELHKRI FARMSAKNPE PNCVQVQVFE PKEDNYFMRA
1301: LIKFDGRLHF EAAKALQELN GEVLPGCLPW QKIKCEQLFQ SSIICSASIY NTVKRQLNVL LARFERQKGG ECCLEPTHNG AYRVKITAYA TRPVAEMRRE
1401: LEELLRGRPI NHPGFTRRVL QHLMSRDGIN LMRKIQQETE TYILLDRHNL TVRICGTSEK IAKAEQELIQ ALMDYHESKQ LEIHLRGPEI RPDLMKEVVK
1501: RFGPELQGIK EKVHGVDLKL NTRYHVIQVH GSKEMRQEVQ KMVNELAREK SALGEKPDEI EVECPICLSE VDDGYSLEGC SHLFCKACLL EQFEASMRNF
1601: DAFPILCSHI DCGAPIVLAD MRALLSQEKL DELFSASLSS FVTSSDGKFR FCSTPDCPSV YRVAGPQESG EPFICGACHS EICTRCHLEY HPLITCERYK
1701: KFKENPDLSL KDWAKGKNVK ECPICKSTIE KTDGCNHMKC RCGKHICWTC LDVFTQEEPC YAHLRTIHGG IGLVE
Arabidopsis Description
ATP-dependent RNA helicase DEAH12, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4KGU4]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.