Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- nucleus 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY17694 | Canola | nucleus | 97.09 | 97.09 |
| AT2G01130.1 | Thale cress | nucleus | 84.23 | 85.89 |
| VIT_01s0011g04360.t01 | Wine grape | plastid | 74.54 | 71.63 |
| KRH38164 | Soybean | nucleus | 67.93 | 69.96 |
| Solyc04g007510.2.1 | Tomato | plastid | 70.93 | 69.76 |
| CDY40601 | Canola | nucleus, plastid | 63.7 | 61.22 |
| CDX93688 | Canola | plastid | 63.52 | 61.1 |
| CDX98799 | Canola | mitochondrion | 56.3 | 55.37 |
| CDX70187 | Canola | mitochondrion | 56.3 | 55.28 |
| CDX79642 | Canola | nucleus, vacuole | 38.41 | 42.13 |
| CDX84588 | Canola | plastid, vacuole | 38.33 | 42.03 |
| CDY68405 | Canola | nucleus | 19.91 | 33.73 |
| CDX95715 | Canola | cytosol | 20.62 | 32.28 |
| CDX76626 | Canola | nucleus | 20.35 | 32.17 |
| CDX83337 | Canola | cytosol | 20.44 | 32.09 |
| CDY11413 | Canola | nucleus | 20.26 | 32.03 |
| CDX74061 | Canola | cytosol | 8.99 | 31.78 |
| CDX74059 | Canola | nucleus | 7.14 | 30.68 |
| CDY36075 | Canola | nucleus | 18.06 | 30.42 |
| CDX90112 | Canola | nucleus | 18.77 | 30.21 |
| CDY34567 | Canola | nucleus | 17.62 | 30.17 |
| CDY11762 | Canola | nucleus | 18.68 | 30.11 |
| CDX78859 | Canola | nucleus | 18.41 | 29.94 |
| CDX99466 | Canola | nucleus | 18.41 | 29.86 |
| CDY37024 | Canola | cytosol, mitochondrion | 8.46 | 29.63 |
| CDY10756 | Canola | nucleus | 28.02 | 29.2 |
| CDY23338 | Canola | cytosol | 10.75 | 28.91 |
| CDX85017 | Canola | cytosol, plastid | 18.15 | 28.53 |
| CDY16154 | Canola | nucleus, plastid | 18.06 | 28.35 |
| CDY32702 | Canola | nucleus | 16.83 | 27.6 |
| CDY02818 | Canola | nucleus | 16.12 | 27.56 |
| CDY60185 | Canola | nucleus | 20.44 | 27.01 |
| CDY40514 | Canola | nucleus | 20.18 | 26.6 |
| CDX97797 | Canola | nucleus | 28.81 | 25.33 |
| CDY29644 | Canola | nucleus | 29.07 | 25.25 |
| CDY10215 | Canola | nucleus | 28.19 | 24.92 |
| CDY39917 | Canola | nucleus | 30.48 | 24.49 |
| CDY29164 | Canola | nucleus | 30.22 | 24.09 |
| CDY26898 | Canola | nucleus | 22.11 | 24.04 |
| CDY32278 | Canola | endoplasmic reticulum | 22.11 | 24.04 |
| CDX83624 | Canola | nucleus | 21.59 | 21.97 |
| CDY13640 | Canola | nucleus | 21.67 | 21.87 |
| CDY63687 | Canola | nucleus, plastid | 20.44 | 20.9 |
| CDX91151 | Canola | nucleus | 22.11 | 20.1 |
| CDX85676 | Canola | nucleus | 22.03 | 20.03 |
| CDY23802 | Canola | nucleus | 8.72 | 18.86 |
| CDY48353 | Canola | nucleus | 19.56 | 18.15 |
| CDY34159 | Canola | nucleus | 19.47 | 17.87 |
| CDX78376 | Canola | plastid | 22.73 | 14.68 |
| CDX81170 | Canola | plastid | 22.64 | 14.58 |
| CDX69841 | Canola | plastid | 22.2 | 14.26 |
| CDX96996 | Canola | nucleus | 22.2 | 14.25 |
| CDY51663 | Canola | nucleus | 0.53 | 9.52 |
| CDX91491 | Canola | nucleus | 0.53 | 9.52 |
Protein Annotations
| Gene3D:1.20.120.1080 | Gene3D:3.30.160.20 | Gene3D:3.40.50.300 | MapMan:35.1 | GO:A0A078J242 | UniProt:A0A078J242 |
| EnsemblPlants:CDY57512 | ProteinID:CDY57512 | ProteinID:CDY57512.1 | InterPro:DEAD/DEAH_box_helicase_dom | InterPro:DUF1605 | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004386 | GO:GO:0005488 |
| GO:GO:0005524 | GO:GO:0016787 | EnsemblPlantsGene:GSBRNA2T00022296001 | InterPro:Helicase-assoc_dom | InterPro:Helicase_ATP-bd | InterPro:Helicase_C |
| InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR014720 | InterPro:P-loop_NTPase | PFAM:PF00035 | PFAM:PF00270 |
| PFAM:PF00271 | PFAM:PF04408 | PFAM:PF07717 | PFscan:PS50137 | PFscan:PS51192 | PFscan:PS51194 |
| PANTHER:PTHR18934 | PANTHER:PTHR18934:SF146 | SMART:SM00358 | SMART:SM00487 | SMART:SM00490 | SMART:SM00847 |
| SUPFAM:SSF52540 | SUPFAM:SSF54768 | UniParc:UPI0004EB61FE | InterPro:dsRBD_dom | SEG:seg | : |
Description
BnaC07g48750DBnaC07g48750D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J242]
Coordinates
chrLK033582:-:28073..33816
Molecular Weight (calculated)
127759.0 Da
IEP (calculated)
8.614
GRAVY (calculated)
-0.281
Length
1135 amino acids
Sequence
(BLAST)
(BLAST)
0001: MKDRLPHPSL YVPPHQRLRS TPPDYAFHPL PLSHTQSQKP PFLPTRLVSA YDDSVSEVAQ LPEPVAFHCA NLDEWRRNLS MLLRDSVKQE VISREKKDRR
0101: DFDKLAALAT SLGLYSHAYA KVVVFSKIPL PNYRFDLDDK RPLREVSVHT DIVKRVDAYL KEHLSKKSKR TDGIPVNSFS RTSSTSSMAT DEGLLEQPEL
0201: PAASKTALDK ILWQRSLQLR ERQDYWEKSV EGQRMLECRR CLPAYKQRDV VLSAISQNQV IVVSGETGCG KTTQIPQFIL ESEIEANRGA LCNIICTQPR
0301: KISAMSVSER VACERGEPLG ESVGYKVRLE GVRGRDTRLL FCTTGILLRR LLVDRSLRGV THVIVDEIHE RGMNEDFLLI ILKDLLPRRP ELKLILMSAT
0401: LDAELFSSYF GGAGVIHIPG FTYPVRSYFL EDILEMFRYR LTPYNQIDDY GQERLWKMNK QIPRKRKSQI ASVVEDALRA ADFKEFSPET RESLSCWNPD
0501: CIGFNLIESL LCHLCENERP GGILVFMTGW DDISSLKDKL QIHPIFGNPN RVMLLACHGS MASFEQRLIF EEPASGVRKI VLATNIAETS ITINDVAFVI
0601: DCGKAKETSY DALNNTPCLL PSWISKVSAQ QRRGRAGRVQ PGQCYHLYPK CLYDAFAEYQ LPEILRTPLQ SLCLQIKSLN FGTISEFLSR ALQSPELLAV
0701: QKAIGYLKII GALDENEQLT ALGRYLAKLP MEPKLGKMLI LGAILGCLDP ILTVAAGLSV RDPFLTPLDK KDLAEAAKSQ FSRDHSDHLA LVRAYERYKR
0801: AEEEAGVYDY CWKNFLSIQS MRAIDSLRKE FFSLLKDTGL IDGTPATCKS GGNDENLTRA VICYGLYPGI CSVVHNERSF SLKTMEDGQV LLYSNSVNAR
0901: ETKIPYPWLV FNEKIKVNSI FVRDSTAVSD SVLILFGGSV SRGDFDGHLK MLGGYLDFFM KPAVAEMYQT LKKELDELIQ SKLLNPKMDM QAHRDLLSVI
1001: RLLVSEDRCE GSFVFGRQAL KPLGTSAVST QPTLVSRTES GPGGDNSKSQ LQTMLTRAGH AAPMYKTKQL KNSKFQSTVE FNGTQIMGQP CSNKKSAEKD
1101: AAAEAIRWLM GGAKESHKHV NHMSNLLKRS KKDHL
0101: DFDKLAALAT SLGLYSHAYA KVVVFSKIPL PNYRFDLDDK RPLREVSVHT DIVKRVDAYL KEHLSKKSKR TDGIPVNSFS RTSSTSSMAT DEGLLEQPEL
0201: PAASKTALDK ILWQRSLQLR ERQDYWEKSV EGQRMLECRR CLPAYKQRDV VLSAISQNQV IVVSGETGCG KTTQIPQFIL ESEIEANRGA LCNIICTQPR
0301: KISAMSVSER VACERGEPLG ESVGYKVRLE GVRGRDTRLL FCTTGILLRR LLVDRSLRGV THVIVDEIHE RGMNEDFLLI ILKDLLPRRP ELKLILMSAT
0401: LDAELFSSYF GGAGVIHIPG FTYPVRSYFL EDILEMFRYR LTPYNQIDDY GQERLWKMNK QIPRKRKSQI ASVVEDALRA ADFKEFSPET RESLSCWNPD
0501: CIGFNLIESL LCHLCENERP GGILVFMTGW DDISSLKDKL QIHPIFGNPN RVMLLACHGS MASFEQRLIF EEPASGVRKI VLATNIAETS ITINDVAFVI
0601: DCGKAKETSY DALNNTPCLL PSWISKVSAQ QRRGRAGRVQ PGQCYHLYPK CLYDAFAEYQ LPEILRTPLQ SLCLQIKSLN FGTISEFLSR ALQSPELLAV
0701: QKAIGYLKII GALDENEQLT ALGRYLAKLP MEPKLGKMLI LGAILGCLDP ILTVAAGLSV RDPFLTPLDK KDLAEAAKSQ FSRDHSDHLA LVRAYERYKR
0801: AEEEAGVYDY CWKNFLSIQS MRAIDSLRKE FFSLLKDTGL IDGTPATCKS GGNDENLTRA VICYGLYPGI CSVVHNERSF SLKTMEDGQV LLYSNSVNAR
0901: ETKIPYPWLV FNEKIKVNSI FVRDSTAVSD SVLILFGGSV SRGDFDGHLK MLGGYLDFFM KPAVAEMYQT LKKELDELIQ SKLLNPKMDM QAHRDLLSVI
1001: RLLVSEDRCE GSFVFGRQAL KPLGTSAVST QPTLVSRTES GPGGDNSKSQ LQTMLTRAGH AAPMYKTKQL KNSKFQSTVE FNGTQIMGQP CSNKKSAEKD
1101: AAAEAIRWLM GGAKESHKHV NHMSNLLKRS KKDHL
0001: MTNRLPPSLY VPPHQRLGSD YGFNPVPLSP VRYVSAYDDR VSEDRQPQEG TFHCADLDDW NKRFSMLLKD SLKQEVISRE KKDRRDFDKL AALATTLGLY
0101: SHAYAKVVVF SKIPLPNYRF DLDDKKPQRE VNLHTDLLQR VEAYLTEYLS KSSNRIDRVP ANSVSRTSSI SSTDEWFSEQ PLPISATKIL WQRSLQLRDR
0201: QQYWQASVEG QRMLDSRTSL PAFKQRHSVL TAISQNQVIV ISGETGCGKT TQIPQFILES EIEANRGAFS SIICTQPRRI SAMSVSERVA YERGEQLGES
0301: VGYKVRLEGV KGRDTRLLFC TTGILLRRLL VDRNLRGVTH VIVDEIHERG MNEDFLLIIL KDLLSRRSEL KLILMSATLD AELFSSYFGG AGVIYIPGFT
0401: YPVRSHFLED ILEMTRYRLT PYNQIDDYGQ ERTWKMNKQI PKKRKSQITF VVEDALRAAD FKEFSPETRE SLSCWYPDCI GFNLIEFLLC NICENEGPGG
0501: ILIFLTGWDD ISSLKEKLQI HPIFGNPDLV MLLACHGSME TFEQRLIFEE PASGVRKIVL ATNIAETSIT INDVAFVIDC GKAKETSYDA LNNTPCLLPS
0601: WISKVSAQQR RGRAGRVRPG QCYHLYPKCV YDAFAEYQLP EILRTPLHSL CLQIKSLNLG SISEFLSRAL QSPELLAVQK AIAFLKIIGA LDENEDLTTL
0701: GRYLSKLPME PKLGKMLILG AILGCLDPIL TVAAGLSVRD PFLTPQDKKD LAEAAKSQFS RDHSDHLALV RAYEGWKKAE EESAVYDYCW KNFLSIQSLR
0801: AIDSLRKEFF SLLKDTGLID GNPSICNSEG NDANLTRAVI CYGMYPGICS VVHNERSFSL KTMEDGQVLL YSNSENARET KIPYPWLVFN EKIKVNSVFL
0901: RDSTACSDST LILFGGSISK GDTDGHLKML GGYLEFFMKP DVAEIYQTLK KELDELIQNK LLNPKVDMQA HRELLSAIRL LVSEDGCDGR FVFGHQILRP
1001: LEISALSTKP SLFSRTESGP GGDNSKSQLQ TILTRAGYTV PMYKTKQLKN NKFQTTVEFN ETQIMGQPCS NKKSAEKDAA AEAIQWLKGG AKESHEQVNH
1101: MSKLLKKGKK DHL
0101: SHAYAKVVVF SKIPLPNYRF DLDDKKPQRE VNLHTDLLQR VEAYLTEYLS KSSNRIDRVP ANSVSRTSSI SSTDEWFSEQ PLPISATKIL WQRSLQLRDR
0201: QQYWQASVEG QRMLDSRTSL PAFKQRHSVL TAISQNQVIV ISGETGCGKT TQIPQFILES EIEANRGAFS SIICTQPRRI SAMSVSERVA YERGEQLGES
0301: VGYKVRLEGV KGRDTRLLFC TTGILLRRLL VDRNLRGVTH VIVDEIHERG MNEDFLLIIL KDLLSRRSEL KLILMSATLD AELFSSYFGG AGVIYIPGFT
0401: YPVRSHFLED ILEMTRYRLT PYNQIDDYGQ ERTWKMNKQI PKKRKSQITF VVEDALRAAD FKEFSPETRE SLSCWYPDCI GFNLIEFLLC NICENEGPGG
0501: ILIFLTGWDD ISSLKEKLQI HPIFGNPDLV MLLACHGSME TFEQRLIFEE PASGVRKIVL ATNIAETSIT INDVAFVIDC GKAKETSYDA LNNTPCLLPS
0601: WISKVSAQQR RGRAGRVRPG QCYHLYPKCV YDAFAEYQLP EILRTPLHSL CLQIKSLNLG SISEFLSRAL QSPELLAVQK AIAFLKIIGA LDENEDLTTL
0701: GRYLSKLPME PKLGKMLILG AILGCLDPIL TVAAGLSVRD PFLTPQDKKD LAEAAKSQFS RDHSDHLALV RAYEGWKKAE EESAVYDYCW KNFLSIQSLR
0801: AIDSLRKEFF SLLKDTGLID GNPSICNSEG NDANLTRAVI CYGMYPGICS VVHNERSFSL KTMEDGQVLL YSNSENARET KIPYPWLVFN EKIKVNSVFL
0901: RDSTACSDST LILFGGSISK GDTDGHLKML GGYLEFFMKP DVAEIYQTLK KELDELIQNK LLNPKVDMQA HRELLSAIRL LVSEDGCDGR FVFGHQILRP
1001: LEISALSTKP SLFSRTESGP GGDNSKSQLQ TILTRAGYTV PMYKTKQLKN NKFQTTVEFN ETQIMGQPCS NKKSAEKDAA AEAIQWLKGG AKESHEQVNH
1101: MSKLLKKGKK DHL
Arabidopsis Description
DExH-box ATP-dependent RNA helicase DExH5, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:F4IM84]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.