CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 2
mitochondrion 1
endoplasmic reticulum 3
extracellular 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY26898	Canola	nucleus	99.23	99.23
CDY37024	Canola	cytosol, mitochondrion	28.93	93.21
AT1G32490.1	Thale cress	cytosol	92.62	92.62
Os08t0335000-00	Rice	cytosol, nucleus	28.64	81.47
GSMUA_Achr4P23370_001	Banana	nucleus	54.41	75.73
Zm00001d049980_P001	Maize	plasma membrane	49.81	74.5
KXG30390	Sorghum	nucleus	70.11	69.98
EES02741	Sorghum	nucleus	69.64	69.5
TraesCS4B01G374800.1	Wheat	nucleus	69.25	69.12
TraesCS4D01G362600.1	Wheat	nucleus	69.06	68.93
HORVU4Hr1G088270.17	Barley	mitochondrion	66.76	64.54
CDY60185	Canola	nucleus	51.63	62.75
CDY40514	Canola	nucleus	51.25	62.14
CDX74061	Canola	cytosol	15.33	49.84
CDY68405	Canola	nucleus	31.9	49.7
CDX76626	Canola	nucleus	33.52	48.75
CDY11413	Canola	nucleus	33.33	48.47
CDX74059	Canola	nucleus	12.16	48.11
CDY23338	Canola	cytosol	18.97	46.92
CDX83337	Canola	cytosol	32.38	46.75
CDX95715	Canola	cytosol	32.38	46.62
CDY36075	Canola	nucleus	28.54	44.21
CDY34567	Canola	nucleus	27.87	43.89
CDX78859	Canola	nucleus	29.31	43.84
CDX99466	Canola	nucleus	29.31	43.71
CDX85017	Canola	cytosol, plastid	29.79	43.07
CDY16154	Canola	nucleus, plastid	29.5	42.6
CDY32702	Canola	nucleus	27.49	41.47
CDY02818	Canola	nucleus	26.25	41.27
CDY11762	Canola	nucleus	27.2	40.34
CDX90112	Canola	nucleus	27.11	40.14
CDX83624	Canola	nucleus	40.13	37.58
CDY13640	Canola	nucleus	40.33	37.42
CDY23802	Canola	nucleus	16.57	32.95
CDX91151	Canola	nucleus	36.59	30.58
CDX85676	Canola	nucleus	36.49	30.53
CDX91491	Canola	nucleus	1.72	28.57
CDY51663	Canola	nucleus	1.72	28.57
CDX79642	Canola	nucleus, vacuole	24.14	24.35
CDX84588	Canola	plastid, vacuole	24.14	24.35
CDY17694	Canola	nucleus	24.23	22.29
CDY57512	Canola	nucleus	24.04	22.11
CDY40601	Canola	nucleus, plastid	24.81	21.93
CDX93688	Canola	plastid	24.71	21.86
CDY48353	Canola	nucleus	25.1	21.42
CDY34159	Canola	nucleus	25.19	21.26
CDX70187	Canola	mitochondrion	22.99	20.76
CDX98799	Canola	mitochondrion	22.89	20.71
CDY10756	Canola	nucleus	20.11	19.28
CDY39917	Canola	nucleus	23.47	17.34
CDY29164	Canola	nucleus	23.47	17.21
CDY10215	Canola	nucleus	20.69	16.82
CDY63687	Canola	nucleus, plastid	17.43	16.4
CDX97797	Canola	nucleus	20.21	16.34
CDY29644	Canola	nucleus	20.21	16.14
CDX96996	Canola	nucleus	24.52	14.47
CDX69841	Canola	plastid	24.43	14.43
CDX78376	Canola	plastid	23.95	14.23
CDX81170	Canola	plastid	23.85	14.12

Protein Annotations

Gene3D:1.20.120.1080	MapMan:16.4.7.1.5	Gene3D:3.40.50.300	GO:A0A078H643	UniProt:A0A078H643	EnsemblPlants:CDY32278
ProteinID:CDY32278	ProteinID:CDY32278.1	ncoils:Coil	InterPro:DNA/RNA_helicase_DEAH_CS	InterPro:DUF1605	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787
EnsemblPlantsGene:GSBRNA2T00051734001	InterPro:Helicase-assoc_dom	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:P-loop_NTPase	PFAM:PF00271	PFAM:PF04408	PFAM:PF07717	ScanProsite:PS00690	PFscan:PS51192
PFscan:PS51194	PANTHER:PTHR18934	PANTHER:PTHR18934:SF117	SMART:SM00487	SMART:SM00490	SMART:SM00847
SUPFAM:SSF52540	UniParc:UPI0004EB103E	SEG:seg	:	:	:

Description

BnaC05g28560DBnaC05g28560D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H643]

Coordinates

chrLK032291:+:3842..11208

Molecular Weight (calculated)

119082.0 Da

IEP (calculated)

5.299

GRAVY (calculated)

-0.626

Length

1044 amino acids

Sequence
(BLAST)

0001: MASNDLKTWV SDKLMVLLGY SQITLVNYVI VKAKQSKSPA ELVGVLMDNG FASSGDTRSF AEEIFARVPH QTASVNLYQQ REAEAAMLVR KQQTYALIDD
0101: DDDDEDEVVK EKKPSASESK KSDKGKKRFR KKSGQSDDSD EEVPVREDSR HVRRKVSEDE DDGSESEEER VRDQKEKEEL EQHIRDRDTA RTRKLTEQKL
0201: SKKEQEEALR RANALEEDDL NSLRKVSRQE YLRKREQKKL EELRDEIEDE QYLFADEKLT ETELREYRYK RELYDLVKKR TQDEDNVEEY RIPDAYDDQE
0301: GGVDQEKRFA VAVQRYKDLD SREKMDPFAE QEAWEDHQIG KARLKFGSKN KKASDDYQFV FEDQINFIKE SVMAGENYED GMHPKEAQDA AEKTALEELQ
0401: EVRKSLPIYG YREQLLQAVE EHQVLVIVGD TGSGKTTQIP QYLHEAGYTK RGKVGCTQPR RVAAMSVAAR VAQEMGVKLG HEVGYSIRFE DCTSDKTVLK
0501: YMTDGMLLRE LLGEPDLASY SVVIVDEAHE RTLSTDILFG LDIARFRPDL KLLISSATMD AEKFSDYFDT APIFSFPGRR YPVEINFTSA PEADYMDAAI
0601: VTVLTIHVRE PLGDILVFLT GQEEIETAEE ILKQRIRGLG TKIRELIICP IYANLPSELQ AKIFEPTPEG ARKVVLATNI AETSLTIDGI KYVVDPGFSK
0701: MKSYNPRTGM ESLLITPISK ASATQRAGRA GRTSAGKCYR LYTAFNYNND LEENTVPEVQ RTNLASVVLA LKSLGIHDLI NFDFMDPPPA EALVKALELL
0801: FALGALNKLG ELTKAGRRMA EFPLDPMLSK MIVVSDKYKC SDEIISIAAM LSVGGSIFYR PKDKQVHADN ARMNFHTGNI GDHIALLKVY SSWKETNYST
0901: QWCYENYIQV RSMKRARDIR DQLEGLLERV EIEISSNMNE LDSVRKSIVA GFFPHTAKLQ KNGSYRTVKH PQTVHIHPNS GLSQVLPRWV VYHELVLTSK
1001: EYMRQVTELK PEWLIELAPH YYQRKDVEDD ASKKMPKGAG KAAI

Best Arabidopsis Sequence Match ( AT1G32490.1 )
(BLAST)

0001: MASNDLKTWV SDKLMMLLGY SQAAVVNYLI AMAKKTKSPT ELVGELVDYG FSSSGDTRSF AEEIFARVPR KTAGVNLYQK HEAEAAMLVR KQKTYALLDA
0101: DDDEDEVVVE KKSSVSESRK SDKGKKRFRK KSGQSDESDG EVAVREDSRH VRRKVSEEDD GSESEEERVR DQKEREELEQ HLKDRDTART RKLTEQTLSK
0201: KEKEEAVRRA NALEKDDLYS LRKVSRQEYL KKREQKKLDE LRDEIEDEQY LFGGEKLTET ELREFRYKKE LYDLVKKRTQ DEDNVEEYRI PDAYDQEGGV
0301: DQEKRFSVAV QRYRDLDSTE KMNPFAEQEA WEDHQIGKAT LKFGAKNKQA SDDYQFVFED QINFIKESVM AGENYEDAMD AKQKSQDLAE KTALEELQEV
0401: RRSLPIYTYR DQLLKAVEEH QVLVIVGDTG SGKTTQIPQY LHEAGYTKRG KVGCTQPRRV AAMSVAARVA QEMGVKLGHE VGYSIRFEDC TSDKTVLKYM
0501: TDGMLLRELL GEPDLASYSV VIVDEAHERT LSTDILFGLV KDIARFRPDL KLLISSATMD AEKFSDYFDT APIFSFPGRR YPVEINYTSA PEADYMDAAI
0601: VTILTIHVRE PLGDILVFFT GQEEIETAEE ILKHRIRGLG TKIRELIICP IYANLPSELQ AKIFEPTPEG ARKVVLATNI AETSLTIDGI KYVVDPGFSK
0701: MKSYNPRTGM ESLLITPISK ASATQRAGRA GRTSPGKCYR LYTAFNYNND LEENTVPEVQ RTNLASVVLA LKSLGIHDLI NFDFMDPPPA EALVKSLELL
0801: FALGALNKLG ELTKAGRRMA EFPLDPMLSK MIVVSDKYKC SDEIISIAAM LSIGGSIFYR PKDKQVHADN ARMNFHTGNV GDHIALLKVY SSWKETNFST
0901: QWCYENYIQV RSMKRARDIR DQLEGLLERV EIDISSNLNE LDSVRKSIVA GFFPHTAKLQ KNGSYRTVKH PQTVHIHPNS GLSQVLPRWV VYHELVLTSK
1001: EYMRQVTELK PEWLIELAPH YYQLKDVEDA ASKKMPKGAG KAAM

Arabidopsis Description

ESP3ESP3 [Source:UniProtKB/TrEMBL;Acc:A0A178W3A5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.