Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra003744.1-P | Field mustard | nucleus | 98.66 | 98.66 |
| CDX76626 | Canola | nucleus | 81.94 | 76.46 |
| CDX83337 | Canola | cytosol | 82.24 | 76.21 |
| CDY11413 | Canola | nucleus | 81.34 | 75.91 |
| CDX95715 | Canola | cytosol | 81.94 | 75.72 |
| KRH68290 | Soybean | nucleus | 80.6 | 75.0 |
| KRG96553 | Soybean | nucleus | 80.6 | 74.9 |
| KRH69191 | Soybean | nucleus | 80.45 | 74.65 |
| PGSC0003DMT400023284 | Potato | nucleus | 79.85 | 74.0 |
| Solyc01g079250.2.1 | Tomato | nucleus | 79.7 | 73.86 |
| TraesCS4A01G124200.2 | Wheat | cytosol | 79.25 | 73.85 |
| TraesCS4D01G181700.1 | Wheat | cytosol | 79.25 | 73.65 |
| TraesCS4B01G180200.1 | Wheat | cytosol | 79.25 | 73.65 |
| HORVU4Hr1G052730.3 | Barley | cytosol | 79.25 | 73.65 |
| VIT_07s0005g01770.t01 | Wine grape | nucleus | 80.0 | 73.63 |
| KXG39505 | Sorghum | cytosol | 78.81 | 73.13 |
| Zm00001d028923_P002 | Maize | nucleus | 77.76 | 72.26 |
| KRH31768 | Soybean | cytosol, nucleus | 61.34 | 71.23 |
| Os03t0314100-01 | Rice | cytosol, nucleus, plastid | 57.61 | 68.44 |
| GSMUA_Achr1P18470_001 | Banana | cytosol | 35.97 | 67.7 |
| Zm00001d047601_P006 | Maize | nucleus | 78.06 | 67.66 |
| CDX74061 | Canola | cytosol | 31.19 | 65.11 |
| CDX74059 | Canola | nucleus | 25.37 | 64.39 |
| CDY37024 | Canola | cytosol, mitochondrion | 21.79 | 45.06 |
| CDY23338 | Canola | cytosol | 26.57 | 42.18 |
| CDX99466 | Canola | nucleus | 43.73 | 41.86 |
| CDX78859 | Canola | nucleus | 43.43 | 41.69 |
| CDY34567 | Canola | nucleus | 40.45 | 40.87 |
| CDY36075 | Canola | nucleus | 40.3 | 40.06 |
| CDX85017 | Canola | cytosol, plastid | 42.54 | 39.47 |
| CDY16154 | Canola | nucleus, plastid | 42.54 | 39.42 |
| CDY60185 | Canola | nucleus | 49.25 | 38.42 |
| CDY11762 | Canola | nucleus | 40.0 | 38.07 |
| CDX90112 | Canola | nucleus | 40.0 | 38.01 |
| CDY40514 | Canola | nucleus | 48.66 | 37.86 |
| CDY32702 | Canola | nucleus | 38.96 | 37.72 |
| CDY02818 | Canola | nucleus | 36.87 | 37.2 |
| CDY26898 | Canola | nucleus | 49.7 | 31.9 |
| CDY32278 | Canola | endoplasmic reticulum | 49.7 | 31.9 |
| CDX83624 | Canola | nucleus | 49.7 | 29.87 |
| CDY13640 | Canola | nucleus | 49.85 | 29.69 |
| CDY23802 | Canola | nucleus | 20.9 | 26.67 |
| CDX85676 | Canola | nucleus | 42.99 | 23.08 |
| CDX91151 | Canola | nucleus | 42.84 | 22.98 |
| CDX79642 | Canola | nucleus, vacuole | 34.78 | 22.51 |
| CDX84588 | Canola | plastid, vacuole | 34.63 | 22.42 |
| CDX91491 | Canola | nucleus | 2.09 | 22.22 |
| CDY51663 | Canola | nucleus | 2.09 | 22.22 |
| CDX70187 | Canola | mitochondrion | 35.37 | 20.5 |
| CDX98799 | Canola | mitochondrion | 35.22 | 20.45 |
| CDX93688 | Canola | plastid | 35.67 | 20.25 |
| CDY40601 | Canola | nucleus, plastid | 35.67 | 20.24 |
| CDY17694 | Canola | nucleus | 33.73 | 19.91 |
| CDY57512 | Canola | nucleus | 33.73 | 19.91 |
| CDY48353 | Canola | nucleus | 34.63 | 18.97 |
| CDY34159 | Canola | nucleus | 34.93 | 18.92 |
| CDY10756 | Canola | nucleus | 30.45 | 18.73 |
| CDX97797 | Canola | nucleus | 30.3 | 15.72 |
| CDY10215 | Canola | nucleus | 29.85 | 15.58 |
| CDY29644 | Canola | nucleus | 30.3 | 15.53 |
| CDY39917 | Canola | nucleus | 30.45 | 14.44 |
| CDY29164 | Canola | nucleus | 30.6 | 14.4 |
| CDY63687 | Canola | nucleus, plastid | 23.13 | 13.96 |
| CDX81170 | Canola | plastid | 32.84 | 12.48 |
| CDX78376 | Canola | plastid | 32.69 | 12.46 |
| CDX69841 | Canola | plastid | 32.69 | 12.39 |
| CDX96996 | Canola | nucleus | 32.39 | 12.27 |
Protein Annotations
| Gene3D:1.20.120.1080 | MapMan:16.4.7.3.3 | Gene3D:3.40.50.300 | GO:A0A078JPN1 | UniProt:A0A078JPN1 | EnsemblPlants:CDY68405 |
| ProteinID:CDY68405 | ProteinID:CDY68405.1 | InterPro:DEAD/DEAH_box_helicase_dom | InterPro:DUF1605 | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0016787 |
| EnsemblPlantsGene:GSBRNA2T00074153001 | InterPro:Helicase-assoc_dom | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 |
| InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFAM:PF04408 | PFAM:PF07717 | PFscan:PS51192 |
| PFscan:PS51194 | PANTHER:PTHR18934 | PANTHER:PTHR18934:SF193 | SMART:SM00487 | SMART:SM00490 | SMART:SM00847 |
| SUPFAM:SSF52540 | UniParc:UPI0004EE21F7 | SEG:seg | : | : | : |
Description
BnaA07g38500DBnaA07g38500D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JPN1]
Coordinates
chrLK037285:-:1041..3053
Molecular Weight (calculated)
76150.8 Da
IEP (calculated)
7.053
GRAVY (calculated)
-0.304
Length
670 amino acids
Sequence
(BLAST)
(BLAST)
001: MEMNKWSGKA YSQRYYEILE KRKSLPVYAQ KQEFLQCLMS NQTLILVGET GSGKTTQIPQ FVLEAVHENH PSKWLVGCTQ PRRVAAMSVA SRVAEEMDVA
101: IGEEVGYSVR FEDCTSSKTV LKYLTDGMLM REAMTDPLLQ RYKVIVLDEA HERTLATDLL FGVLKRVLSN RPDLKLVVMS ATLEAEKCLE YFRGAPLMKV
201: PGRLHPVEIL YTQEPERDYL DSAIRTVVQI HMFEPPGDVL VFLTGEEEIE DACRKIVCEL GDQVNVVPLY SSLPPAMQQK IFDPPTENVR KIVVSTNIAE
301: TSLTIDGVVY VVDPGFAKQK LYNPETRVES LLVSAISQAS ANQRAGRAGR TRPGKCFRLY TEKSFNHDLI EQTYPEILRS NLANTVLTLK KLGIDNLVCF
401: DYMDPPAPVT MGRALNDLLD LGALDEELNL TRTGEMMSEF PLDPQMAKML IVSPKFNCSN EILSISAMLS VPNCFVRPRG EAQKAADEAR ARFGHTDGDH
501: LTLLNVYHDY KQNNGDSNWC YQNFINHKAM KSADNVREQL VRIMSRFNLK TCSSDFTSRD YYINIRKALL AGYFMQVAHL DRTGHYLTAK DGQMVHLHPS
601: CCLDHKPEWV VYNEYVLTSR NFIRTVTYIR GEWLVDVAPD YYHLSNFPNC EAKRVLQKLS KKRDRAGNPK
101: IGEEVGYSVR FEDCTSSKTV LKYLTDGMLM REAMTDPLLQ RYKVIVLDEA HERTLATDLL FGVLKRVLSN RPDLKLVVMS ATLEAEKCLE YFRGAPLMKV
201: PGRLHPVEIL YTQEPERDYL DSAIRTVVQI HMFEPPGDVL VFLTGEEEIE DACRKIVCEL GDQVNVVPLY SSLPPAMQQK IFDPPTENVR KIVVSTNIAE
301: TSLTIDGVVY VVDPGFAKQK LYNPETRVES LLVSAISQAS ANQRAGRAGR TRPGKCFRLY TEKSFNHDLI EQTYPEILRS NLANTVLTLK KLGIDNLVCF
401: DYMDPPAPVT MGRALNDLLD LGALDEELNL TRTGEMMSEF PLDPQMAKML IVSPKFNCSN EILSISAMLS VPNCFVRPRG EAQKAADEAR ARFGHTDGDH
501: LTLLNVYHDY KQNNGDSNWC YQNFINHKAM KSADNVREQL VRIMSRFNLK TCSSDFTSRD YYINIRKALL AGYFMQVAHL DRTGHYLTAK DGQMVHLHPS
601: CCLDHKPEWV VYNEYVLTSR NFIRTVTYIR GEWLVDVAPD YYHLSNFPNC EAKRVLQKLS KKRDRAGNPK
001: MGTERKRKVS LFDVMEDPSL SSKNTKSNGL GLAAAAGGGS NLINKWNGKA YSQRYFEILE KRRDLPVWLQ KDDFLNTLNS NQTLILVGET GSGKTTQIPQ
101: FVLDAVVADN SDKGRKWLVG CTQPRRVAAM SVSRRVADEM DVSIGEEVGY SIRFEDCTSS RTMLKYLTDG MLLREAMADP LLERYKVIIL DEAHERTLAT
201: DVLFGLLKEV LRNRPDLKLV VMSATLEAEK FQEYFSGAPL MKVPGRLHPV EIFYTQEPER DYLEAAIRTV VQIHMCEPPG DILVFLTGEE EIEDACRKIN
301: KEVSNLGDQV GPVKVVPLYS TLPPAMQQKI FDPAPVPLTE GGPAGRKIVV STNIAETSLT IDGIVYVIDP GFAKQKVYNP RIRVESLLVS PISKASAHQR
401: SGRAGRTRPG KCFRLYTEKS FNNDLQPQTY PEILRSNLAN TVLTLKKLGI DDLVHFDFMD PPAPETLMRA LEVLNYLGAL DDEGNLTKTG EIMSEFPLDP
501: QMSKMLIVSP EFNCSNEILS VSAMLSVPNC FVRPREAQKA ADEAKARFGH IDGDHLTLLN VYHAYKQNNE DPNWCFENFV NNRAMKSADN VRQQLVRIMS
601: RFNLKMCSTD FNSRDYYVNI RKAMLAGYFM QVAHLERTGH YLTVKDNQVV HLHPSNCLDH KPEWVIYNEY VLTTRNFIRT VTDIRGEWLV DVAQHYYDLS
701: NFPNCEAKRA LEKLYKKRER EKNESKNRK
101: FVLDAVVADN SDKGRKWLVG CTQPRRVAAM SVSRRVADEM DVSIGEEVGY SIRFEDCTSS RTMLKYLTDG MLLREAMADP LLERYKVIIL DEAHERTLAT
201: DVLFGLLKEV LRNRPDLKLV VMSATLEAEK FQEYFSGAPL MKVPGRLHPV EIFYTQEPER DYLEAAIRTV VQIHMCEPPG DILVFLTGEE EIEDACRKIN
301: KEVSNLGDQV GPVKVVPLYS TLPPAMQQKI FDPAPVPLTE GGPAGRKIVV STNIAETSLT IDGIVYVIDP GFAKQKVYNP RIRVESLLVS PISKASAHQR
401: SGRAGRTRPG KCFRLYTEKS FNNDLQPQTY PEILRSNLAN TVLTLKKLGI DDLVHFDFMD PPAPETLMRA LEVLNYLGAL DDEGNLTKTG EIMSEFPLDP
501: QMSKMLIVSP EFNCSNEILS VSAMLSVPNC FVRPREAQKA ADEAKARFGH IDGDHLTLLN VYHAYKQNNE DPNWCFENFV NNRAMKSADN VRQQLVRIMS
601: RFNLKMCSTD FNSRDYYVNI RKAMLAGYFM QVAHLERTGH YLTVKDNQVV HLHPSNCLDH KPEWVIYNEY VLTTRNFIRT VTDIRGEWLV DVAQHYYDLS
701: NFPNCEAKRA LEKLYKKRER EKNESKNRK
Arabidopsis Description
Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH3 [Source:UniProtKB/Swiss-Prot;Acc:O22899]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.