Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX74059 | Canola | nucleus | 72.27 | 87.88 |
| Bra001237.1-P | Field mustard | cytosol | 99.07 | 73.61 |
| GSMUA_Achr1P18470_001 | Banana | cytosol | 42.06 | 37.92 |
| Os03t0314100-01 | Rice | cytosol, nucleus, plastid | 63.55 | 36.17 |
| CDY68405 | Canola | nucleus | 65.11 | 31.19 |
| KRH31768 | Soybean | cytosol, nucleus | 53.27 | 29.64 |
| CDX76626 | Canola | nucleus | 65.73 | 29.39 |
| CDY11413 | Canola | nucleus | 65.42 | 29.25 |
| TraesCS4A01G124200.2 | Wheat | cytosol | 65.42 | 29.21 |
| HORVU4Hr1G052730.3 | Barley | cytosol | 65.42 | 29.13 |
| TraesCS4B01G180200.1 | Wheat | cytosol | 65.42 | 29.13 |
| TraesCS4D01G181700.1 | Wheat | cytosol | 65.42 | 29.13 |
| CDX83337 | Canola | cytosol | 65.42 | 29.05 |
| KRH68290 | Soybean | nucleus | 64.8 | 28.89 |
| KRG96553 | Soybean | nucleus | 64.8 | 28.85 |
| CDX95715 | Canola | cytosol | 65.11 | 28.83 |
| KRH69191 | Soybean | nucleus | 64.49 | 28.67 |
| Zm00001d028923_P002 | Maize | nucleus | 64.17 | 28.57 |
| KXG39505 | Sorghum | cytosol | 64.17 | 28.53 |
| Solyc01g079250.2.1 | Tomato | nucleus | 64.17 | 28.49 |
| PGSC0003DMT400023284 | Potato | nucleus | 64.17 | 28.49 |
| VIT_07s0005g01770.t01 | Wine grape | nucleus | 64.17 | 28.3 |
| Zm00001d047601_P006 | Maize | nucleus | 63.55 | 26.39 |
| CDX99466 | Canola | nucleus | 45.79 | 21.0 |
| CDX78859 | Canola | nucleus | 45.48 | 20.92 |
| CDY11762 | Canola | nucleus | 44.55 | 20.31 |
| CDX90112 | Canola | nucleus | 44.55 | 20.28 |
| CDY34567 | Canola | nucleus | 41.74 | 20.21 |
| CDY36075 | Canola | nucleus | 41.74 | 19.88 |
| CDX85017 | Canola | cytosol, plastid | 43.3 | 19.25 |
| CDY16154 | Canola | nucleus, plastid | 43.3 | 19.23 |
| CDY32702 | Canola | nucleus | 41.43 | 19.22 |
| CDY60185 | Canola | nucleus | 47.66 | 17.81 |
| CDY02818 | Canola | nucleus | 36.45 | 17.62 |
| CDY40514 | Canola | nucleus | 47.04 | 17.54 |
| CDY23802 | Canola | nucleus | 25.23 | 15.43 |
| CDY26898 | Canola | nucleus | 49.84 | 15.33 |
| CDY32278 | Canola | endoplasmic reticulum | 49.84 | 15.33 |
| CDX83624 | Canola | nucleus | 49.22 | 14.17 |
| CDY13640 | Canola | nucleus | 49.22 | 14.04 |
| CDY37024 | Canola | cytosol, mitochondrion | 13.71 | 13.58 |
| CDX79642 | Canola | nucleus, vacuole | 36.45 | 11.3 |
| CDX84588 | Canola | plastid, vacuole | 36.14 | 11.21 |
| CDX85676 | Canola | nucleus | 42.37 | 10.9 |
| CDX91151 | Canola | nucleus | 42.37 | 10.89 |
| CDY23338 | Canola | cytosol | 13.71 | 10.43 |
| CDY48353 | Canola | nucleus | 37.07 | 9.73 |
| CDY34159 | Canola | nucleus | 37.07 | 9.62 |
| CDX98799 | Canola | mitochondrion | 34.27 | 9.53 |
| CDX70187 | Canola | mitochondrion | 34.27 | 9.52 |
| CDY57512 | Canola | nucleus | 31.78 | 8.99 |
| CDY17694 | Canola | nucleus | 31.78 | 8.99 |
| CDY40601 | Canola | nucleus, plastid | 33.02 | 8.98 |
| CDX93688 | Canola | plastid | 32.71 | 8.9 |
| CDY63687 | Canola | nucleus, plastid | 29.28 | 8.47 |
| CDY10756 | Canola | nucleus | 27.73 | 8.17 |
| CDY10215 | Canola | nucleus | 28.04 | 7.01 |
| CDY39917 | Canola | nucleus | 30.22 | 6.86 |
| CDY29164 | Canola | nucleus | 30.22 | 6.81 |
| CDX97797 | Canola | nucleus | 27.1 | 6.74 |
| CDY29644 | Canola | nucleus | 27.1 | 6.66 |
| CDX69841 | Canola | plastid | 33.33 | 6.06 |
| CDX96996 | Canola | nucleus | 33.02 | 5.99 |
| CDX78376 | Canola | plastid | 32.4 | 5.92 |
| CDX81170 | Canola | plastid | 32.4 | 5.9 |
| CDX91491 | Canola | nucleus | 0.0 | 0.0 |
| CDY51663 | Canola | nucleus | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDX74061 | EnsemblPlantsGene:GSBRNA2T00111808001 | Gene3D:1.10.10.2130 | Gene3D:3.40.50.300 | InterPro:Helicase_C | InterPro:IPR001650 |
| InterPro:P-loop_NTPase | PANTHER:PTHR18934 | PANTHER:PTHR18934:SF193 | PFAM:PF00271 | PFscan:PS51194 | ProteinID:CDX74061 |
| ProteinID:CDX74061.1 | SMART:SM00490 | SUPFAM:SSF52540 | UniParc:UPI0004EE0E41 | MapMan:35.1 | : |
Description
BnaA03g29860D
Coordinates
chrLK031800:+:1138138..1139208
Molecular Weight (calculated)
36628.5 Da
IEP (calculated)
5.288
GRAVY (calculated)
-0.124
Length
321 amino acids
Sequence
(BLAST)
(BLAST)
001: MTAARRVAEE MDVKLGEEVG YTVRFEDLSS PRTVLKYLTD VMLLKEAMVD PLFLRYKVII VDEVFNKRYF RGAPLIKVPS GRLLHPVEIL YTREPVMDYL
101: ESAISKVIQI HTCEPPGDVL VFLTGEEEIE QACSRIVRSL GDQVTVVPLY SSLPPALQHK IFDPTPPPHS VRKIIVSTNV AETSLSMDGI VYVVDPGFSK
201: QKNYSYLTTD ELWFVSRISQ ASAYQRAGRA GRKCFRLYTE KTFNDFMDKE IPEILRSNLV KTVLTLKRLG VEDLTYFEYI DPPSTRMLFR GMEDLFHLGA
301: MDDQGNLTNI GHMMESLEEP L
101: ESAISKVIQI HTCEPPGDVL VFLTGEEEIE QACSRIVRSL GDQVTVVPLY SSLPPALQHK IFDPTPPPHS VRKIIVSTNV AETSLSMDGI VYVVDPGFSK
201: QKNYSYLTTD ELWFVSRISQ ASAYQRAGRA GRKCFRLYTE KTFNDFMDKE IPEILRSNLV KTVLTLKRLG VEDLTYFEYI DPPSTRMLFR GMEDLFHLGA
301: MDDQGNLTNI GHMMESLEEP L
001: MGTERKRKVS LFDVMEDPSL SSKNTKSNGL GLAAAAGGGS NLINKWNGKA YSQRYFEILE KRRDLPVWLQ KDDFLNTLNS NQTLILVGET GSGKTTQIPQ
101: FVLDAVVADN SDKGRKWLVG CTQPRRVAAM SVSRRVADEM DVSIGEEVGY SIRFEDCTSS RTMLKYLTDG MLLREAMADP LLERYKVIIL DEAHERTLAT
201: DVLFGLLKEV LRNRPDLKLV VMSATLEAEK FQEYFSGAPL MKVPGRLHPV EIFYTQEPER DYLEAAIRTV VQIHMCEPPG DILVFLTGEE EIEDACRKIN
301: KEVSNLGDQV GPVKVVPLYS TLPPAMQQKI FDPAPVPLTE GGPAGRKIVV STNIAETSLT IDGIVYVIDP GFAKQKVYNP RIRVESLLVS PISKASAHQR
401: SGRAGRTRPG KCFRLYTEKS FNNDLQPQTY PEILRSNLAN TVLTLKKLGI DDLVHFDFMD PPAPETLMRA LEVLNYLGAL DDEGNLTKTG EIMSEFPLDP
501: QMSKMLIVSP EFNCSNEILS VSAMLSVPNC FVRPREAQKA ADEAKARFGH IDGDHLTLLN VYHAYKQNNE DPNWCFENFV NNRAMKSADN VRQQLVRIMS
601: RFNLKMCSTD FNSRDYYVNI RKAMLAGYFM QVAHLERTGH YLTVKDNQVV HLHPSNCLDH KPEWVIYNEY VLTTRNFIRT VTDIRGEWLV DVAQHYYDLS
701: NFPNCEAKRA LEKLYKKRER EKNESKNRK
101: FVLDAVVADN SDKGRKWLVG CTQPRRVAAM SVSRRVADEM DVSIGEEVGY SIRFEDCTSS RTMLKYLTDG MLLREAMADP LLERYKVIIL DEAHERTLAT
201: DVLFGLLKEV LRNRPDLKLV VMSATLEAEK FQEYFSGAPL MKVPGRLHPV EIFYTQEPER DYLEAAIRTV VQIHMCEPPG DILVFLTGEE EIEDACRKIN
301: KEVSNLGDQV GPVKVVPLYS TLPPAMQQKI FDPAPVPLTE GGPAGRKIVV STNIAETSLT IDGIVYVIDP GFAKQKVYNP RIRVESLLVS PISKASAHQR
401: SGRAGRTRPG KCFRLYTEKS FNNDLQPQTY PEILRSNLAN TVLTLKKLGI DDLVHFDFMD PPAPETLMRA LEVLNYLGAL DDEGNLTKTG EIMSEFPLDP
501: QMSKMLIVSP EFNCSNEILS VSAMLSVPNC FVRPREAQKA ADEAKARFGH IDGDHLTLLN VYHAYKQNNE DPNWCFENFV NNRAMKSADN VRQQLVRIMS
601: RFNLKMCSTD FNSRDYYVNI RKAMLAGYFM QVAHLERTGH YLTVKDNQVV HLHPSNCLDH KPEWVIYNEY VLTTRNFIRT VTDIRGEWLV DVAQHYYDLS
701: NFPNCEAKRA LEKLYKKRER EKNESKNRK
Arabidopsis Description
Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH3 [Source:UniProtKB/Swiss-Prot;Acc:O22899]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.