CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EES18624
OQU87370

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62310.1	EES18624	AT1G17970.1	21798944
AT3G62310.1	OQU87370	AT1G17970.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d028923_P002	Maize	nucleus	97.78	97.92
TraesCS4A01G124200.2	Wheat	cytosol	95.57	95.97
TraesCS4D01G181700.1	Wheat	cytosol	95.57	95.7
HORVU4Hr1G052730.3	Barley	cytosol	95.43	95.56
TraesCS4B01G180200.1	Wheat	cytosol	95.43	95.56
Zm00001d047601_P006	Maize	nucleus	97.78	91.33
Os03t0314100-01	Rice	cytosol, nucleus, plastid	70.91	90.78
KRG96553	Soybean	nucleus	88.92	89.04
KRH68290	Soybean	nucleus	88.23	88.47
KRH69191	Soybean	nucleus	88.37	88.37
VIT_07s0005g01770.t01	Wine grape	nucleus	88.5	87.77
PGSC0003DMT400023284	Potato	nucleus	86.84	86.72
Solyc01g079250.2.1	Tomato	nucleus	86.7	86.58
Bra000445.1-P	Field mustard	cytosol	86.57	86.45
CDX83337	Canola	cytosol	86.57	86.45
CDX76626	Canola	nucleus	85.87	86.35
Bra007671.1-P	Field mustard	nucleus	85.6	86.07
AT2G47250.1	Thale cress	nucleus	86.84	86.01
CDY11413	Canola	nucleus	85.46	85.93
AT3G62310.1	Thale cress	nucleus	86.15	85.67
CDX95715	Canola	cytosol	86.01	85.66
GSMUA_Achr1P18470_001	Banana	cytosol	40.44	82.02
KRH31768	Soybean	cytosol, nucleus	65.37	81.8
Bra003744.1-P	Field mustard	nucleus	73.82	79.55
CDY68405	Canola	nucleus	73.13	78.81
AT5G14900.1	Thale cress	cytosol	30.47	73.09
CDX74061	Canola	cytosol	28.53	64.17
CDX74059	Canola	nucleus	23.13	63.26
Bra001237.1-P	Field mustard	cytosol	37.4	62.5
Bra001238.1-P	Field mustard	cytosol, mitochondrion	22.3	60.98
OQU86123	Sorghum	nucleus	42.24	43.57
KXG22666	Sorghum	nucleus	41.0	41.99
EER87951	Sorghum	nucleus, plastid	36.15	37.02
KXG30390	Sorghum	nucleus	49.58	34.23
EES02741	Sorghum	nucleus	49.45	34.13
EES15324	Sorghum	nucleus	48.62	32.77
OQU77934	Sorghum	nucleus	48.2	32.65
EER95349	Sorghum	nucleus	49.86	28.99
KXG38358	Sorghum	nucleus	33.93	23.65
KXG36287	Sorghum	nucleus	40.86	22.96
KXG37551	Sorghum	nucleus, vacuole	32.83	20.57
KXG30805	Sorghum	nucleus	33.38	18.89
KXG32067	Sorghum	mitochondrion	32.27	18.78
EES01523	Sorghum	nucleus	29.22	17.66
KXG26332	Sorghum	nucleus, plastid	30.33	15.36
OQU90279	Sorghum	nucleus	29.64	14.11

Protein Annotations

Gene3D:1.20.120.1080	MapMan:16.4.7.3.3	Gene3D:3.40.50.300	UniProt:A0A1B6QNL9	InterPro:AAA+_ATPase	ncoils:Coil
InterPro:DUF1605	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488
GO:GO:0005524	GO:GO:0016787	InterPro:Helicase-assoc_dom	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR003349	InterPro:IPR014001	InterPro:JmjN	EnsemblPlants:KXG39505	ProteinID:KXG39505	ProteinID:KXG39505.1
InterPro:P-loop_NTPase	PFAM:PF00271	PFAM:PF04408	PFAM:PF07717	PFAM:PF13401	PFscan:PS51183
PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR18934	PANTHER:PTHR18934:SF193	SMART:SM00487	SMART:SM00490
SMART:SM00847	EnsemblPlantsGene:SORBI_3001G392300	SUPFAM:SSF52540	UniParc:UPI00081AC188	SEG:seg	:

Description

hypothetical protein

Coordinates

chr1:-:67856044..67860444

Molecular Weight (calculated)

81739.3 Da

IEP (calculated)

7.192

GRAVY (calculated)

-0.357

Length

722 amino acids

Sequence
(BLAST)

001: MGTERKRKVS LFDVVDETSV SAKLGRAASN GAAATAAGGN PSVNRWNGRP YTARYFEILE KRRTLPVWQQ KEEFLRSLRD NQTLILVGET GSGKTTQIPQ
101: FVLEAEGLSN RSMVACTQPR RVAAMSVSRR VAEEMDVTIG EEVGYSIRFE DCSSHKTVLK YLTDGMLLRE AMADPLLEKY KVIVLDEAHE RTLATDVLFG
201: LLKEVLKNRP DLKLVVMSAT LEAEKFQGYF SGAPLMKVPG RLHPVEIFYT QEPERDYLEA AIRTVVQIHM CEPAGDILVF LTGEEEIEDA CRKINKEINN
301: MGDQVGTVKV VPLYSTLPPA MQQKIFEPAP APLKEGGPPG RKIVVSTNIA ETSLTIDGIV YVIDPGFSKQ KVYNPRIRVE SLLVSPISKA SAHQRAGRAG
401: RTQPGKCFRL YTEKSFNEDL QPQTYPEILR SNLANTVLTL KKLGIDDLVH FDFMDPPAPE TLMRALEVLN YLGALDDEGN LTQLGEMMSE FPLDPQMSKM
501: LVISPKYNCS NEILSISAML SVPNCFLRPR EAQKAADEAK ARFGHIDGDH LTLLNVYHAY KQNNEDPQWC YENFINSRAL KSADNVRQQL VRIMTRFNLK
601: MCSTDFNSRE YYVNIRKAML AGYFMQVAHL ERTGHYLTVK DNQVVHLHPS NCMDHKPEWV IYNEYVLTTR NFIRTVTDIG GEWLIDIAPH YYDLSNFPSC
701: EAKRVLERLY NKRERERASN RG

Best Arabidopsis Sequence Match ( AT3G62310.1 )
(BLAST)

001: MGTERKRKIS LFDVMDDPSA PAKNAKTSGL PDGGINSLIN KWNGKPYSQR YYDILEKRRT LPVWLQKEEF LKTLNNNQTL ILVGETGSGK TTQIPQFVID
101: AVDAETSDKR RKWLVGCTQP RRVAAMSVSR RVAEEMDVTI GEEVGYSIRF EDCSSPRTVL KYLTDGMLLR EAMADPLLER YKVIILDEAH ERTLATDVLF
201: GLLKEVLKNR PDLKLVVMSA TLEAEKFQDY FSGAPLMKVP GRLHPVEIFY TQEPERDYLE AAIRTVVQIH MCEPPGDILV FLTGEEEIED ACRKINKEVG
301: NLGDQVGPIK VVPLYSTLPP AMQQKIFDPA PEPVTEGGPP GRKIVVSTNI AETSLTIDGI VYVIDPGFAK QKVYNPRIRV ESLLVSPISK ASAHQRSGRA
401: GRTRPGKCFR LYTEKSFNND LQPQTYPEIL RSNLANTVLT LKKLGIDDLV HFDFMDPPAP ETLMRALEVL NYLGALDDDG NLTKTGEIMS EFPLDPQMAK
501: MLIVSPEFNC SNEILSVSAM LSVPNCFIRP REAQKAADEA KARFGHIEGD HLTLLNVYHA FKQNNEDPNW CYENFINNRA MKSADNVRQQ LVRIMSRFNL
601: KMCSTDFNSR DYYINIRKAM LAGYFMQVAH LERTGHYLTV KDNQVVHLHP SNCLDHKPEW VIYNEYVLTS RNFIRTVTDI RGEWLVDVAS HYYDLSNFPN
701: CEAKRVIEKL YKKREREKEE SKKNRK

Arabidopsis Description

Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZQ9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.